rna1890, rna1890 (mRNA) Nannochloropsis gaditana

Overview
Namerna1890
Unique Namerna1890
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3261
Alignment locationCM002458.1:402664..404081 -

Link to JBrowse

Properties
Property NameValue
Productkinetochore protein spc25
Orig transcript idgnl|cribi|Naga_100002g132.4794.mrna
Orig protein idgnl|cribi|Naga_100002g132.4794
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:402664..404081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g132gene1806Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28675.1cds1885Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1890rna1890-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1890 ID=rna1890|Name=rna1890|organism=Nannochloropsis gaditana|type=mRNA|length=3261bp
ATGGCTACATCCCCCTACACTGTCTCCGGTCGCCCTCAAACACTGCCCTC
TGGTGTACATCACACTCGACTGAAGTGGTTGAATGGCTGTGAAGCACGAT
TGTACTGCCACACTTCCTCTTCGTCCTTTCCCCCGAGGTCTCCTTCCTCG
TCCTCCCCTCCTTTTGCGCCTGCCTCCACAAATATTACCACTCCTGTCGC
AAAAGACAGCAGTGTACCGCGGTGTGTGGTCTATTGGATGCAACGGAGTG
TCCGTTCTTCTTTTAATCACGCACTTGAAGTCGCGATTCATTATGCAAAC
CAGTTGGATGTGCCTCTCCTCGTTGTTTACGCAATTGTTACCTCCTACCC
CGGCGCCAACGAGCGAGGCTTTGCCTTCCTTTTCGAAGGTTTGCACGAAG
CACAAACATCGTTGGCAAATCGGGGAATCCGACTGGTTGTTCGTGAAGCC
AAGGTCGTCGGGGAAAACAGCACCAGAGGCGCAGCAGCCACGGCGGTGCC
CTTGACCATCGTCGACACGTGCAAGAGGGTCAAGGCCCCGCTCTTGGTGA
TGGACAGGGCCTACGAGCGTCTCTTGCGCACATGGCGCGAAGACGTGTGT
GCCCGCGTGGCATGCCCGGTCTTGATGGTGGAGAGTGATGTGGTGGTGCC
CGTGGACGTGGTCAGCCCGCAACCTTTGAGCTCGGCCGCCGCCCTTCGGC
GCGCGCACGCACCCTTACTCTCTCAATACCTCCTCCCTCTACCGGAAGGC
TCCCTCCGACATCCATCACACGCCCTCCCCGCCTGTTCTCCCTCGGCACC
CTCACCCTTATTCCCGGACGAGCTTGAGATGCACGACCCGCTCGCCCTCC
TGTCCTCTCTCGCCGACCTCGACCGTAGCGTGCCTCGTGTCAGCTTCAAG
CGCGGCGGCAGCACACAGGCGAAACTACTCCTTGCACGCTTCCTCCGCGA
TCGTCTTCGCGGCTACCAGGCCCGTCGCAAAGAGGCAGTCGCCCGACACC
AATCTTTCCTCTCCCCTTACCTGCACTTCGGGCACATTTCTCCCATTTAC
GTGGCACTTAAGGTCCGGCAGCACGCGAGCAGCACCCCTCAAGATCGAAG
GCGTTTTTGTGACGAGCTTCTGACCTGGCGGGAGATGGCGGTGCATTTTG
TGTACCACCACCGAGAGAGCTACGACCGGTATGAAGGGATTCCGCGCTGG
GCAAGGGAGAGCTTAGAGGAGGCGGCCGAGGGGGAGCGGAGGCACGCCTA
TAGTTTGACTGAGCTCGAGGAAGGGCGAACGCATGATTTGCTATGGAATG
CAGCGCAAGAAGAGATGAGGGTGACGGGCTATATGAACAATTACATGCGG
ATGTTCTGGTGCAAGAGCATCATTGCCTGGACGGCTGAAGGACCCCGGGA
GGCGTACCGGCGGTCGCTTTTTCTGAACGACAAGTACTTTTTGGACGGAC
GGGATTGCAATGGCTATATGGGCGTTGCCTGGTGTTTCGGCTTGTATGAC
CGCCCGATGCCAGGGTTCAGCCCTATTTTTGGTAAAGTTCGGCGCATGAC
AGCGAACGGCGTCAGGGCTAAGCAGGATGTGGGTGCCTACATTTGTCAAG
TGAAAGACTTGGCAGCGAAGGTGGAACGGGCGAGTAGATGGGGGCGTGAA
GGGGGAGGAAAGGGTCATTGCGGCGATGGGAATATAGAGGAGCACCAAAA
TGGGGCAATGTTGGGTGTTGAAGATGCGATCTACGCGAAACCGCTAAGCC
ATCGTGTAGATGCATTTCTTTCACCGGTTCCGGAGCGCCACAACGCAAAG
CGTAAAACAGACGGCAATAGTGAAAGCCATGCGTCCTACAGTGCAGGAAG
AGGTTTACAAGGAAAGCGAGAGGGTGAGGTTGACGGAGAAAGAGGAGGAC
AAAGGAAAAAGGAGACGAAGACCGGTGCATCCTCCACTAATGCGAGTGAA
GAGTGGAAAGGCGCCTTTTGGGAAGAGAGACGGTCCCTGCAAGAGGGAAG
ATGGCAACCGGAAAAAGAAACTTTACGGAAAGAAAACCCAGGGAATTTCT
CCTCACGTAAGGGAGACCTCCCCTCTTGGCGCGGCCCATTCGGTCAGCAG
ACAAGTCTATCGGAAAAGCAACTGCTTGCACAATCTGAGCTACCTTCAAG
CCATCAAATGGCGGACGCTGAAGCAGTTGTGAGTCTCGGCGACCGCATCG
AGCAGGCTAAATGTAAAGCTCAGACTCTGAAAAAAGAAATCGAAGAAGTA
AGGAAGCAAAAAGACAACGCCATGCTGCCGGGAGCTGCCAACAACCAGCA
GCTACCTGACTTTAAAAACAAGATAATTCGGATACGGAGAATTCTCAAGG
GTCATTTTGGCAAAGTTTATTCCATGCACTGGGCTCAAAAGAGTACACAG
CTGGTTTCAGCTTCTCAAGACGGCAAGCTGATAATCTGGAATGCCCATAC
TACAAACAAAGTGCAATCTATCCCCCTCCGCTCATCGTGGGTTATGACGT
GTTGTTTCGAACAAACCAATGGTGCTTTAGTGGCTTGTGGAGGGCTCGAT
AATGTGTGCTCTGTCTACAGAGTCAGTGGACCAGGGATGCCGGCGCCTTC
GTCTCCTACTGGGCAATCAGCTATACGACCTGCCCATGAACTCATTGCGC
ATGATGGATACTTGTCCTGCTGCCGTTTTATAGATGAGCAAAGTCTGCTT
ACTTCTTCAGGGGATTCAACCTGCATTTTTTGGGATGTGGAGAAGAATGA
GGCGATCACCTCCTTCGCCGACCATGGCGGAGACGTCATGAGCCTCTCTG
TGCTCCCGTCCATCAACCGACATATATTCGTCTCTGGCTCTTGCGACGCA
ACTGCCAAAGTATGGGACACCCGTCTGGGGAAGTGTGTGCAGACACATGC
CGGCCACGAGTCGGACGTCAATGCCGTCCAGTTCTTTCCGGACGGGAACG
CATTCAGCACCGGCTCTGACGACTCGACCTGCCGGCTTTTCGACATCCGC
TCCTACGGGGCCGTGAATGTCTTTGGCAATGACAAAATTGTCTCCGGTGT
GACAAGCGTCAGTTTCTCAGCCTCGGGGCGCCTGCTATTCGCGGGCCATG
ACGACTCTAGTTGCCTGGCTTGGGACGTGCTCGCCGACGGTAAAGGGCTG
GCCTTCCAATTGGCTGGACATGAGAGCCGTGTCTCTTGTCTGGGAGTGAA
TAGTACGGGCGAAGCGCTCTGTACAGGATCGTGGGACTCGTTGCTTAAGG
TATGGGCTTAA
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protein sequence of rna1890

>rna1890-protein ID=rna1890-protein|Name=rna1890|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MNTGRSCDLSTFAFSMAATAEQLARSIAQDITETQARLDKWLENSRADLE
GLEMRHEKALAEMVAERATLLARQAELKGKTDEGTRLSEQRQETLKAIEA
EIARLKEKEADLPQELQLARAREKELQEILASKRAALSELSSRQGDYIND
LTRGVVMYKHLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADR
YRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATIKSN
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mRNA from alignment at CM002458.1:402664..404081-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1890 ID=rna1890|Name=rna1890|organism=Nannochloropsis gaditana|type=mRNA|length=1418bp|location=Sequence derived from alignment at CM002458.1:402664..404081- (Nannochloropsis gaditana)
CATGCACATCCAAGTGTACCTGGGTGTCAGTCAGGCTGTATTTTCCATAT
CCTCGCGAAGTATTTGTGAGAACAGGAACATGCTTCTCCATTTTCTCCCT
CATAGGGACCCATCTGTCTCACATTCATCCGTCCATCTGATAAGTATACG
ATTCTACGCAATAATGGGCTGTCTATCACTATACCCTTCCCGACACACTG
TCCATCACAAACATTTCCAGTGCCATTCATACCTTCTTTTGAGGATTTCT
CCATTTATTTGTGCTTTCTGGAGCGTTTAGTGCCTTTTTGATAACCACGA
AGCACGCGCTCATCATTGATGAAAAAAACATAACTTTACCATCAGCGACT
TGCAAGTGACACCGCCTTCTTTCTTTTCCCATGAATACAGGCAGATCTTG
CGATCTTTCTACCTTTGCCTTCAGCATGGCTGCGACGGCGGAGCAACTGG
CCCGTTCCATCGCGCAAGACATCACTGAGACGCAGGCCCGCTTGGACAAA
TGGCTTGAGAACTCCAGGGCGGACTTGGAGGGGCTGGAGATGCGACACGA
GAAAGCATTGGCTGAGATGGTGGCCGAGCGCGCGACGCTGTTGGCAAGGC
AAGCCGAACTGAAAGGTAAGACCGACGAAGGCACACGCCTTTCAGAGCAA
AGGCAAGAGACTCTGAAAGCGATCGAAGCGGAGATCGCACGACTTAAAGA
AAAGGAGGCAGACTTGCCGCAAGAACTTCAACTTGCTCGAGCCCGCGAGA
AGGAACTCCAGGAGATATTGGCAAGCAAGCGCGCTGCCTTGAGCGAGCTG
TCATCGCGGCAAGGAGACTATATCAACGACCTTACACGGGGGGTGGTCAT
GTACAAGCATTTGGGGCTAGACTTTGAACGGGCGGACGACAACAAACTCC
GCCTGATTTTCACTCAGCTGGACGCAACAAACCCGTCACGTGAGTATTTC
TTCTCGGTGCACATTGACGAGGCGGACCGGTACCGTGTGGAGGAGTGTGA
CCCGACGCTGGACACGGCGATGGTGGATGGGCTAGTTGCAGAGCTCAACC
AAGCGAACGACTTTGCGGTTTTTGTAAAAAAAATGCGCAGGGCATTCAAG
GCGACCATAAAGTCAAATTGAGTGGGTGGCTCGGAACGCAGGGGGCGTGA
TTAAAAAAGGGATGAGGCCACGCGTATTGTATACTAGAGCATAAAAGGAC
TGTGCAAAAGCTGCAATACCTAGGTCAAAAGGGACGATTGATTGTGAGAT
AGTAGAATTGAGGGATCCCTGACTGCGAAGCATCCACCGGACGTGGGCGC
CACTGAAGAATCAGTTAGCAAGAGCCACGTTTGACTACTGTAGTAAATCA
GTAACCGTATGAGAGTGTACAATGAGAGGATCAAGCAAAGAATTTCAACC
GATCGCGTAATAGTCTAG
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Coding sequence (CDS) from alignment at CM002458.1:402664..404081-

>rna1890 ID=rna1890|Name=rna1890|organism=Nannochloropsis gaditana|type=CDS|length=741bp|location=Sequence derived from alignment at CM002458.1:402664..404081- (Nannochloropsis gaditana)
ATGAATACAGGCAGATCTTGCGATCTTTCTACCTTTGCCTTCAGCATGGC
TGCGACGGCGGAGCAACTGGCCCGTTCCATCGCGCAAGACATCACTGAGA
CGCAGGCCCGCTTGGACAAATGGCTTGAGAACTCCAGGGCGGACTTGGAG
GGGCTGGAGATGCGACACGAGAAAGCATTGGCTGAGATGGTGGCCGAGCG
CGCGACGCTGTTGGCAAGGCAAGCCGAACTGAAAGGTAAGACCGACGAAG
GCACACGCCTTTCAGAGCAAAGGCAAGAGACTCTGAAAGCGATCGAAGCG
GAGATCGCACGACTTAAAGAAAAGGAGGCAGACTTGCCGCAAGAACTTCA
ACTTGCTCGAGCCCGCGAGAAGGAACTCCAGGAGATATTGGCAAGCAAGC
GCGCTGCCTTGAGCGAGCTGTCATCGCGGCAAGGAGACTATATCAACGAC
CTTACACGGGGGGTGGTCATGTACAAGCATTTGGGGCTAGACTTTGAACG
GGCGGACGACAACAAACTCCGCCTGATTTTCACTCAGCTGGACGCAACAA
ACCCGTCACGTGAGTATTTCTTCTCGGTGCACATTGACGAGGCGGACCGG
TACCGTGTGGAGGAGTGTGACCCGACGCTGGACACGGCGATGGTGGATGG
GCTAGTTGCAGAGCTCAACCAAGCGAACGACTTTGCGGTTTTTGTAAAAA
AAATGCGCAGGGCATTCAAGGCGACCATAAAGTCAAATTGA
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Synonyms
Publications