EWM28675.1, cds1885 (CDS) Nannochloropsis gaditana

Overview
NameEWM28675.1
Unique Namecds1885
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:402961..403701 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28675.1
Productkinetochore protein spc25
Orig transcript idgnl|cribi|Naga_100002g132.4794.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:402961..403701 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013255Spc25
Homology
BLAST of EWM28675.1 vs. NCBI_GenBank
Match: gi|585111098|gb|EWM28675.1| (kinetochore protein spc25 [Nannochloropsis gaditana])

HSP 1 Score: 498.434 bits (1282), Expect = 2.585e-178
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
Query:    1 MNTGRSCDLSTFAFSMAATAEQLARSIAQDITETQARLDKWLENSRADLEGLEMRHEKALAEMVAERATLLARQAELKGKTDEGTRLSEQRQETLKAIEAEIARLKEKEADLPQELQLARAREKELQEILASKRAALSELSSRQGDYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATIKSN 246
            MNTGRSCDLSTFAFSMAATAEQLARSIAQDITETQARLDKWLENSRADLEGLEMRHEKALAEMVAERATLLARQAELKGKTDEGTRLSEQRQETLKAIEAEIARLKEKEADLPQELQLARAREKELQEILASKRAALSELSSRQGDYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATIKSN
Sbjct:    1 MNTGRSCDLSTFAFSMAATAEQLARSIAQDITETQARLDKWLENSRADLEGLEMRHEKALAEMVAERATLLARQAELKGKTDEGTRLSEQRQETLKAIEAEIARLKEKEADLPQELQLARAREKELQEILASKRAALSELSSRQGDYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATIKSN 246          
BLAST of EWM28675.1 vs. NCBI_GenBank
Match: gi|219115966|ref|XP_002178778.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409545|gb|EEC49476.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 112.464 bits (280), Expect = 1.873e-26
Identity = 77/236 (32.63%), Postives = 129/236 (54.66%), Query Frame = 0
Query:   34 TQARLDKWLENSRADLEGLEMRHEKALAEMVAERA----------------TLLARQ-------AELKGKTDEGTRLSEQRQETLK---AIEAEIARLKEKEADLPQELQ-LARAREKELQEILASKRAALSELSSRQGDYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEA-DRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKA 241
            +++R++ W+E            HEKA A+ V ER+                 LLA Q       +E +  T +   L+ +++E L+   A+E+EIA L +K+A    +LQ L   RE E  ++  ++       +S+Q   + DLT+G+V Y++LG+DF++A DN ++  FTQLD T P R++ F + +D+  D+Y V+ CDP +   +++ L+++LN  +D   FV  MR AFKA
Sbjct:   24 SRSRVETWVE------------HEKAQADAVYERSKQTRASHQHRIDQALTNLLALQLEGGLAVSETESTTKKEKNLAARKEELLREQEAVESEIASLAKKQAQRKAQLQELNGEREAEKAKVQGTRELKQRVQASKQTT-LEDLTKGIVNYQYLGIDFQKAQDNHMKFYFTQLDPTQPKRQFSFLLQVDDVDDQYIVDVCDPPIPEHILNELLSDLNADDDMLPFVIGMRHAFKA 246          
BLAST of EWM28675.1 vs. NCBI_GenBank
Match: gi|470407543|ref|XP_004336048.1| (trichohyalin, putative [Acanthamoeba castellanii str. Neff] >gi|440792827|gb|ELR14035.1| trichohyalin, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 105.145 bits (261), Expect = 6.221e-24
Identity = 71/223 (31.84%), Postives = 122/223 (54.71%), Query Frame = 0
Query:   27 IAQDITETQARLDKWLENSRADLEGLEMRHEKALAEMVAERATLLARQAELKGKTDEGTR--LSEQRQETLKAIEAEIARLKEKEADLPQEL-QLARAREKELQEILASKRAALSELSSRQGDYINDLTRGVVMYK-HLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLD--TAMVDGLVAELNQANDFAVFVKKMRRAFKATI 243
            +  ++ + +  L KW++    ++E ++ +H+ A A+   E A+L  +Q +    T++  R  L+++ +E LK ++  I +L++KE  LPQEL Q  R  EK+ Q+++   R  L+E        +  L + V  Y+  LGL+ +R   N +R IF  +D  +P R++ F +H+D +DRY VEEC P +D   AMV+ L        D   FV  +R  FKA++
Sbjct:    9 VVDEMDKARQELQKWMQERVRNVEDIKKKHQNATAKYTGEVASL-HQQMKSAESTEKSVRQELADEERE-LKRLQQMIKKLRDKENLLPQELEQRKREVEKQHQKLVTQDRQ-LAERQREHAQSLQALAQDVNRYRERLGLELQRVGINHMRFIFVYIDPNHPMRQFSFDLHLDSSDRYHVEECKPPVDGLAAMVEALNGN---GGDLTKFVVAIRNKFKASV 225          
BLAST of EWM28675.1 vs. NCBI_GenBank
Match: gi|1210524362|dbj|GAX17091.1| (kinetochore protein Spc25, fungi type [Fistulifera solaris])

HSP 1 Score: 101.679 bits (252), Expect = 2.127e-22
Identity = 72/219 (32.88%), Postives = 108/219 (49.32%), Query Frame = 0
Query:   36 ARLDKWLENSRADLEGLEMRHEKALAEMVA--ERATLLARQAELKGKT--------DEGTRL--SEQRQETLKAIEAEIARLKEKEADL---PQELQLARAREKELQEILASKRAALSELSSRQGDYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAF 239
            ++LD W+E            H+K LA+ VA  ++  +  +QAE+            DE   +   E   +    +E E  R++  +  L    QEL+  R    E +E     R    E    +   I+DLTRG++ YK+LGLDFER  D+KLR  FTQLD +NPSR+++F + + E D   +  C+P + +   + LV   N+  D   FV  MRRAF
Sbjct:   29 SKLDTWVE------------HQKELADKVAAEQKEAIAKKQAEVDHHVTSLLALNIDENLYVDGKENVHDVQGRVENEQQRVETLQKQLDGKKQELEELRKEYNEFKERAVEVRRQKQETEMSKETTIDDLTRGIINYKYLGLDFERVPDDKLRFCFTQLDPSNPSRKFWFEMDVTELD-CSIPNCEPPIRSETREQLVQAFNKNEDMQEFVLGMRRAF 234          
BLAST of EWM28675.1 vs. NCBI_GenBank
Match: gi|1210515857|dbj|GAX25380.1| (kinetochore protein Spc25, fungi type [Fistulifera solaris])

HSP 1 Score: 100.908 bits (250), Expect = 3.819e-22
Identity = 72/218 (33.03%), Postives = 107/218 (49.08%), Query Frame = 0
Query:   37 RLDKWLENSRADLEGLEMRHEKALAEMVA--ERATLLARQAELKGKT--------DEGTRL--SEQRQETLKAIEAEIARLKEKEADL---PQELQLARAREKELQEILASKRAALSELSSRQGDYINDLTRGVVMYKHLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAF 239
            +LD W+EN            +K LA+ VA  ++A +  +QAE+            DE   +   E   +    +E E  R+   +  L    QEL+  R    E +E     R    E    +   I+DLTRG++ YK+LGLDFER  ++KLR  FTQLD +NPSR+++F + + E D   +  C+P + +   + LV   N+  D   FV  MRRAF
Sbjct:   30 KLDTWVEN------------QKELADKVAAEQKAAIAKKQAEVDHNVTSLLALTIDENLHVDGKENVHDVQGRVETEQQRVDTLQKQLDGKKQELEELRKEYNEFKERAVEVRRQKQETEMSKETTIDDLTRGIINYKYLGLDFERVPNDKLRFCFTQLDPSNPSRKFWFEMDVTELD-CSIPNCEPPIRSETREQLVQAFNKNEDMQEFVLGMRRAF 234          
BLAST of EWM28675.1 vs. NCBI_GenBank
Match: gi|470325357|ref|XP_004364432.1| (hypothetical protein CAOG_01564 [Capsaspora owczarzaki ATCC 30864] >gi|765549602|gb|KJE90223.1| hypothetical protein CAOG_001564 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 99.3673 bits (246), Expect = 1.055e-21
Identity = 74/240 (30.83%), Postives = 129/240 (53.75%), Query Frame = 0
Query:   13 AFSMAATAEQLARSIAQDITETQARL-DKWLENSRADLEGLEMRHEKALAEMVAERATLLARQAELKGKTDEGTRLSEQRQETLKAIEAEIARLKEKEADLPQELQLARAREKELQEILASKRAALSE----LSSRQGD---YINDLTRGVVMY-KHLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATI 243
            +++M  + EQL     Q+   T AR+ D W ++   ++   ++RH K + +     A L A   +L   ++ G  L+ Q+        AEIA  +   + L Q+ +LA   + ++++ +A++  AL      LS R+ D    + +LTRGV  + + LGL  +R   + L+ IF  +D  N +RE+ FSV IDE + Y V+ C+P ++   + G+VA+LN  N  +VF+K +R+ FKA +
Sbjct:    3 SYNMERSLEQL-----QEDMLTAARMVDNWADSQLKEMRHAQLRHTKTMEDDKENAAKLQASLKQLGEHSEAGQILASQQ-------AAEIALSRSAVSQLQQQKELAMDTQNDIRQQIAAREQALVRETEMLSERERDAATSMKELTRGVQFFSERLGLKIQRTGKHHLQFIFRYIDPYNVNREFSFSVRIDEKNMYHVDVCEPMVED--LAGMVAQLNDDNQLSVFIKNIRKKFKAMV 228          
BLAST of EWM28675.1 vs. NCBI_GenBank
Match: gi|922868921|gb|KOO35180.1| (kinetochore protein spc25 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 92.8189 bits (229), Expect = 3.791e-18
Identity = 54/153 (35.29%), Postives = 92/153 (60.13%), Query Frame = 0
Query:   95 LKAIEAEIARLKEKEADLPQELQLARAREKELQE--ILASKRAALSELSSRQGDY-INDLTRGVVMYK-HLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATI 243
            ++A++A++ +L  +E  LP E Q     E++L +   L ++  A+ E + R  ++ + +L RG+ +YK  LGL F++  D++LRL FT +D T+P R +   V +   D Y V+ C+PTL    + GLV  LN +NDF+ FV+ +R+ F+  I
Sbjct:  273 VEALKADLDKLHAQEQVLPPESQRL---EQQLTQSRALVTRSEAILEQAQRGMEHKLGELDRGISLYKARLGLAFDKVGDDRLRLTFTCIDPTDPERAFCLEVCVTVGDHYVVQSCEPTLTE--LPGLVHTLNASNDFSAFVRAVRKGFQKLI 420          
BLAST of EWM28675.1 vs. NCBI_GenBank
Match: gi|919042479|ref|XP_013404492.1| (PREDICTED: kinetochore protein Spc25-like [Lingula anatina])

HSP 1 Score: 88.1965 bits (217), Expect = 2.380e-17
Identity = 56/207 (27.05%), Postives = 107/207 (51.69%), Query Frame = 0
Query:   38 LDKWLENSRADLEGLEMRHEKALAEMVAERATLLARQAELKGKTDEGTRLSEQRQETLKAIEAEIARLKEKEADLPQELQLARAREKELQEILASKRAALSELSSRQGDYINDLTRGVVMYK-HLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATI 243
            L++W  +  A +   + RHE+ + +   +   L A   +LKG+     ++ E+R   +K +  +I  +  +   L +E +LA    K +QE +  ++  ++         +++L +    +K  LG+ F++   N+L+++FT +D  + SR +FFSV I+    Y V +C+P ++   +  LV +LN  N+F  FV  MR  FKA +
Sbjct:   38 LEEWSGDMTAAMAEQKKRHEEVMRKGKEDMEALKATLEQLKGQAKTNQKVMEERIGKMKQLREDIGTVTTETDSLLREKELAMEEMKSMQEYIQKQKELITAQEQATHQRLDELQKASEWFKDRLGIQFKKTSGNRLQMVFTCIDPKDTSRPFFFSVKIEADGTYTVSDCEPEIEN--LPELVEKLNATNNFRSFVITMRTLFKAKV 242          
BLAST of EWM28675.1 vs. NCBI_GenBank
Match: gi|545707339|ref|XP_005705984.1| (kinetochore protein Spc25, animal type [Galdieria sulphuraria] >gi|452822445|gb|EME29464.1| kinetochore protein Spc25, animal type [Galdieria sulphuraria])

HSP 1 Score: 86.2705 bits (212), Expect = 7.775e-17
Identity = 65/222 (29.28%), Postives = 120/222 (54.05%), Query Frame = 0
Query:   36 ARLDKWLENSRADLEGLE------MRHEK----ALAEMVAERATLLARQAELKGKTDE--GTRLSEQRQETLKAIEAEIARLKEKEADLPQELQLARAREKELQEILASKRAALSELS-SRQGDYINDLTRGVVMYKH-LGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATI 243
             +LD++L+ +R   E         + H K     +++ + E+A  LA++ +   +T E    RL  ++QE ++A+ A I++LK K+  +P++    +   +    +L S++ A SE++ + Q  Y N L   +  Y++ LGL  ER +D ++  IFT ++   P REY F + +DE D Y+VE C P +    V  L+ +LN+  D + F+  +R+ F+A +
Sbjct:    7 VKLDEYLQKARKHFEQWNEEQLRFLNHIKESHFTMSKDLQEKAVSLAQREKQLLETAEKISERLDSEKQE-IEAVMAGISQLKSKQEMIPEKKTKLKEELENQSSLLKSRQRAFSEINETSQQKYAN-LRNAIRTYENCLGLRLERTEDGRIAFIFTHINQQVPEREYSFCIFVDENDHYQVESCTPPVKDITV--LLEKLNRDEDLSRFILSIRKRFQAMV 224          
BLAST of EWM28675.1 vs. NCBI_GenBank
Match: gi|919081729|ref|XP_013421913.1| (PREDICTED: kinetochore protein Spc25-like [Lingula anatina])

HSP 1 Score: 86.6557 bits (213), Expect = 8.371e-17
Identity = 55/207 (26.57%), Postives = 106/207 (51.21%), Query Frame = 0
Query:   38 LDKWLENSRADLEGLEMRHEKALAEMVAERATLLARQAELKGKTDEGTRLSEQRQETLKAIEAEIARLKEKEADLPQELQLARAREKELQEILASKRAALSELSSRQGDYINDLTRGVVMYK-HLGLDFERADDNKLRLIFTQLDATNPSREYFFSVHIDEADRYRVEECDPTLDTAMVDGLVAELNQANDFAVFVKKMRRAFKATI 243
            L++W  +  A +   + RHE+ + +   +   L     +LKG+     ++ E+R   +K +  +I  +  +   L +E +LA    K +QE +  ++  ++         +++L +    +K  LG+ F++   N+L+++FT +D  + SR +FFSV I+    Y V +C+P ++   +  LV +LN  N+F  FV  MR  FKA +
Sbjct:   34 LEEWSGDMTAAMAEQKKRHEEVMRKGKEDMEALKTTLEQLKGQAKTNQKVMEERIGKMKQLREDIGTVTTETDSLLREKELAMEEMKSMQEYIQKQKELITAQEQATHQRLDELQKASEWFKDRLGIQFKKTSGNRLQMVFTCIDPKDTSRPFFFSVKIEADGTYTVSDCEPEIEN--LPELVEKLNATNNFRSFVITMRTLFKAKV 238          
The following BLAST results are available for this feature:
BLAST of EWM28675.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111098|gb|EWM28675.1|2.585e-178100.00kinetochore protein spc25 [Nannochloropsis gaditan... [more]
gi|219115966|ref|XP_002178778.1|1.873e-2632.63predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|470407543|ref|XP_004336048.1|6.221e-2431.84trichohyalin, putative [Acanthamoeba castellanii s... [more]
gi|1210524362|dbj|GAX17091.1|2.127e-2232.88kinetochore protein Spc25, fungi type [Fistulifera... [more]
gi|1210515857|dbj|GAX25380.1|3.819e-2233.03kinetochore protein Spc25, fungi type [Fistulifera... [more]
gi|470325357|ref|XP_004364432.1|1.055e-2130.83hypothetical protein CAOG_01564 [Capsaspora owczar... [more]
gi|922868921|gb|KOO35180.1|3.791e-1835.29kinetochore protein spc25 [Chrysochromulina sp. CC... [more]
gi|919042479|ref|XP_013404492.1|2.380e-1727.05PREDICTED: kinetochore protein Spc25-like [Lingula... [more]
gi|545707339|ref|XP_005705984.1|7.775e-1729.28kinetochore protein Spc25, animal type [Galdieria ... [more]
gi|919081729|ref|XP_013421913.1|8.371e-1726.57PREDICTED: kinetochore protein Spc25-like [Lingula... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1890rna1890Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications