rna1880, rna1880 (mRNA) Nannochloropsis gaditana

Overview
Namerna1880
Unique Namerna1880
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1844
Alignment locationCM002458.1:359636..361990 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g143.4923.mrna
Orig protein idgnl|cribi|Naga_100002g143.4923
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:359636..361990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g143gene1796Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28804.1cds1875Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1880rna1880-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1880 ID=rna1880|Name=rna1880|organism=Nannochloropsis gaditana|type=mRNA|length=1844bp
CACGCGAGAGGGCAACTTGATGCAGGGGGCGCAGAAGCGGGGGCCTTTAA
CCTCCCCACCCCCTGGGGGAGCTCTACACCTTCTAGTCAACAAGGCACAT
TCCTTTCCCTGAAGAACCGCGATGCAGTCATATAGCAAGGCTGAGGACAA
TTTGGGAGTGGACGTTAACCTCTTGGTATTCAATCCTCCTCTATGGCCTC
CATCCCCTCGCTTCTATGTCGGGGGTGTCTCGGCAGCTTACGCCTCTGGT
GCACTTCAGTTGTTCGGCTTGACGCACTTGCTCTCCCTTGGGGTCACTCC
AGCGGCTCATGTAGCGGCGCATTTTACTGTGGGACGCACATCTCTATGCC
TCCCAGACCTACTGGACGTCGAGGATCAAGACCTCCTGTCTGCGGCGCCG
TCTCTACTAGCTTTTCTTTCGGCCACGACATCGTCTGACTCGATCCTGGT
GCATTGCCAAGCAGGCCAATCACGATCCATCGCTGCCGTGTTGATGTACT
TGATAGTGTGCAAGGGCATGGATCTTGTCGATGCTCACGCCCAGATCGCC
CGCTGTCGGCCTCAGGTCTGCGTCAATGCCGGTTTTCTCCGCCAGCTTCT
CTTTTTGGAGGACTTTGTGGCGCGCGATATCTTCTACGAAAGTCTAATGC
CAAGGCTGGTGACGAGGCCCCTAACACATAATAGTCACGGACATGACACT
GACGGAATTCTCAACCGCACGGGGTGCGCTACTCAGGAGCAATGCACGTC
TTCGGGGCTCCACTCTTGTCAGCTAGCGTCTGAGCATCGCCTGTACATAT
TAGGAAAACGCATTCAAACGACGTGCCAGCTATCTTCTCTGGACGCTGGC
AGCCTCCTGGAGGAAGTGGAAGAGATGCATCGGGCACTTATAGATCAGGT
CAGGCTTTACTTTCGGGGTGCGTGCACGGGAAAGCATCGAGATCCTACAA
GCGAGGAGAGGGAGGAAGGAATGGTGCGAAGTGCAGAAAGGGGCAAGACA
GGAGGACAAGCGGTGGGCTGGGTAGCCCGGTGCCGTCATTGTGGGCACGT
TTTGTGCACGGAGGAGGAGGAAGTGCGTCACTCTGCTCCCGACTTTAAAG
CCTCTCGCGTTTTCGACCGAGTCAAAGCGATCGGGAGAGCCGCCCCGGAA
GCTGAGAAATTTCGAGGATACCTGGAAGCATTTGAAAGGCGGCCGCTACT
GCATTTGTCCACGGTGCCGTACGCCATATTGAAGCAGCGAAGGAAGAGGG
ACGGGCGGACCGATCCAAGGAGAGCAGTGAGGGGAGATGGGATCCCAGAT
ATTCAACAGAAGGATGGAAGACGTCCAAGCGCAGAAATCTCGTCTGCTTC
GAGGGAAGGCTCCATCAGGCGCGCTGATGACAGAGAGGTCGGCCAGGGTT
GTCAGTATATGTACGCCTATCCTCGTCGATGGTCCTTGGCTTCCTTGCTG
GGGGGCGGAACGGCCTCGGGGTCGGCTGTGAAGCCGAAGGACAGAGGCGT
CGAAGGAGGCGGCACCGGAGGGGACTTTGGGGGTTCCGAAGGGATGAGGA
GTCTCAGATGTCCCGGCCGGCATTGTGGGGTGATCGTGGGTGCCACGCAG
GCGAGGGTTGGGGAGGTAGCTGGCAGTGCAAGGGGGGGGGAGGCTTGCGA
GTGTATGGAGGCTCTGCCGATGGTAGTAGTGCGATTTCGAAGGGGTTGTT
TGAGGATCGATACGGTAACGGAAAGGAGATCGGCTTGGTCCTCAGTAAGT
GGTGTAAACGTTGATGTATAGTAATAATGCATCCATCTTCTGACCACGCT
AATCTTGAAAAGGGCGAGATAAAATGAGAGTTAAGAGACGCTGA
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protein sequence of rna1880

>rna1880-protein ID=rna1880-protein|Name=rna1880|organism=Nannochloropsis gaditana|type=polypeptide|length=267bp
MPDLQNRRLYRLRALSWSCALLLLEKGTCAHGDATSVRRLGGTRPWWTSR
TAASVAAEAAAAALPFLAAPAKMSFLQPTVASTESARAAKTVPVPPFRLP
QKTWMPWPQPFSDMQTPAKDPRPGQALEIYSEPRNDTGQAPFQFPTHASR
GKEGREASDNAGDETADGALALSLLGLGLWIALSALLVIRFVQSEKRREI
MLRFWRAIDANPELRRAVEEEAGGAPLPQYPRRPGLHRFFRACCVALLVT
VGLHIVFFRGPHPCTGW
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mRNA from alignment at CM002458.1:359636..361990-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1880 ID=rna1880|Name=rna1880|organism=Nannochloropsis gaditana|type=mRNA|length=2355bp|location=Sequence derived from alignment at CM002458.1:359636..361990- (Nannochloropsis gaditana)
CCTCATGATGCACTAACAATTGAAACGTTCTTTCCATGCTCCTCACTTTC
CGCAGGGTGGGCTGATCAAATCAATCACGCAAATTGCGCTGCCTACGCGC
GCACGCCCCAGTCAAGGGCCTCAAGGAAGTGGGGCCCGGAATGCCTGACC
TGCAGAACCGTCGCCTGTATCGGCTCCGGGCGCTGTCTTGGTCGTGCGCT
CTCCTCCTGTTGGAAAAGGGTACATGTGCACATGGAGATGCAACGAGCGT
GCGGCGGCTGGGAGGGACTCGCCCATGGTGGACATCGAGGACCGCAGCCT
CGGTTGCGGCTGAAGCTGCCGCCGCCGCCTTGCCCTTTCTAGCCGCTCCA
GCCAAAATGTCATTTTTGCAGCCCACAGTGGCCAGCACTGAATCCGCGAG
AGCAGCAAAGACGGTGCCAGTTCCTCCATTCCGCCTGCCCCAGAAGACGT
GGATGCCGTGGCCTCAGCCCTTCTCTGACATGCAGACCCCTGCCAAGGAC
CCAAGGCCGGGACAAGCGCTGGAGATATACTCAGAGCCACGAAATGATAC
AGGCCAGGCACCCTTCCAATTCCCCACTCATGCGTCCAGAGGCAAAGAGG
GGAGAGAGGCCTCCGACAACGCGGGGGACGAAACCGCGGACGGCGCCCTT
GCCCTGTCCCTCCTAGGGTTGGGCCTGTGGATTGCCTTGAGTGCCCTGCT
CGTCATCCGCTTCGTCCAAAGCGAGAAGCGCCGGGAGATCATGCTCCGAT
TCTGGCGCGCGATCGACGCGAATCCTGAGCTGCGACGGGCCGTGGAGGAG
GAGGCAGGAGGGGCTCCTCTCCCCCAGTACCCGCGCCGTCCAGGGCTCCA
CCGCTTCTTTCGGGCCTGCTGCGTGGCCTTGCTTGTGACGGTCGGCTTGC
ACATCGTCTTTTTTCGTGGGCCGCACCCCTGTACCGGCTGGTGAGGGGGA
GGGCGGGAGCGAGGGGGGCGGGGGGAAAGGGGGGGGGGAAGCGGGGGAGG
AAGCGGCTTGCCCCTGGACCCGACCAGTGACGACGGAACAGCAGGGAACA
ACCCCGTCGTAGGCATCGTCGTCCTCTCTCTCCTGCTTGCGTCCGTGATT
TTGATCATCCGGGGCCTATACATGGCTTGCTGTGCCTCCTCGTCCTCTTT
CCCCGCTTCCTCGGCTCCTTACGGCCCAGAAGGGGGGCCGGCCCGGTGGG
ACACGGAGGCGGGGGCAGGTGTCCATCCAGTCGCCGTGACGCCCTACGTG
TCCTTGCATAGCACCGGGTGCAACAGCGGGGGATGGGTTTGGGGGGGTAG
TCCATTCCTGGGGGAGGCCCAGGAAGTGTACTACGTGGGTGTCGCAGTGC
CGGAGTCCACTTCCCCTCGGTCGGGACAGGACCCGGGCAGGTCGGGTCCG
ACGGCGGAGGAGGCAGGTGGGGAGGAAGGTGCGCCCCCCCCTTACTCCTC
GGCCTTGCAAACGATGCCGGAGAGCTCGACTTCGGTAGTGTAAAGCCTCC
TTCATGATGTGTGTTGTCTAGGTGTGGGCGGTGGCGTGTAGGGTAGAACA
AGCGGAGTATATTCTCGTTTAAAGTGGGAAGCTTTCTTTCCTTTGAAACC
TTGGTGGTTTCTGGGGGGGAAGCAAGCAGAAGGCGAGATAAATGCAGCCG
GGCGTGGGAGTGCGATTGGATAGATGTGAGATAGAGGGTGGAAGCACTGG
AAACGTGAAAATGTTACCAGATAGTTTATCGGCGCATGTATGAAAAAGAA
TGGTCGGAAGACTTGTCGAGAAGGTCCAGGAAAGGGATGAGAGACACGAT
TGAAATTCTTGGAAACTACAAGTGCCGCGATAAGAGTGAGGCTGTGGAAA
GGCGTGAAAAACGAGTGGTAGAAGAAAGGGGAAAGCAATAGCCAAGAAGG
TTTCTGATTCTTCATTGGATTGGTAGAAAGAAAGATAGGCGCGGCGAGTA
CTGCTCGGTGACTCTAGACTGCAGACATGCGAAGTGTAAGAATAGGGCGA
GTGGGGGCTTTGGCAAATTTTGAGGGGGAGAAAAAGCCAAGCCAGGATCA
AGAAAGGAAGGAGAGCTGGAGCAAAAAAGGTGCTTTGGGGGCAACAGGAG
GACTAGAGAGCCGCCTTGTCCATTTTGTGTGCATAATATCGACGGAGACT
CCTCTAATGGCAGATGGGAAACGAGAGGCGTGAGGTTTACGCTCTGGAAA
GACGGGAAGAAAATACACACCGTGAAGACCAAAGAAATTGAGGAGTGAGA
CTGAAAAGGGTTTTGCTGTGCAAGCAGTCGTCAGCGTCTCTTAACTCTCA
TTTTATCTCGCCCTTTTCAAGATTAGCGTGGTCAGAAGATGGATGCATTA
TTACT
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Coding sequence (CDS) from alignment at CM002458.1:359636..361990-

>rna1880 ID=rna1880|Name=rna1880|organism=Nannochloropsis gaditana|type=CDS|length=804bp|location=Sequence derived from alignment at CM002458.1:359636..361990- (Nannochloropsis gaditana)
ATGCCTGACCTGCAGAACCGTCGCCTGTATCGGCTCCGGGCGCTGTCTTG
GTCGTGCGCTCTCCTCCTGTTGGAAAAGGGTACATGTGCACATGGAGATG
CAACGAGCGTGCGGCGGCTGGGAGGGACTCGCCCATGGTGGACATCGAGG
ACCGCAGCCTCGGTTGCGGCTGAAGCTGCCGCCGCCGCCTTGCCCTTTCT
AGCCGCTCCAGCCAAAATGTCATTTTTGCAGCCCACAGTGGCCAGCACTG
AATCCGCGAGAGCAGCAAAGACGGTGCCAGTTCCTCCATTCCGCCTGCCC
CAGAAGACGTGGATGCCGTGGCCTCAGCCCTTCTCTGACATGCAGACCCC
TGCCAAGGACCCAAGGCCGGGACAAGCGCTGGAGATATACTCAGAGCCAC
GAAATGATACAGGCCAGGCACCCTTCCAATTCCCCACTCATGCGTCCAGA
GGCAAAGAGGGGAGAGAGGCCTCCGACAACGCGGGGGACGAAACCGCGGA
CGGCGCCCTTGCCCTGTCCCTCCTAGGGTTGGGCCTGTGGATTGCCTTGA
GTGCCCTGCTCGTCATCCGCTTCGTCCAAAGCGAGAAGCGCCGGGAGATC
ATGCTCCGATTCTGGCGCGCGATCGACGCGAATCCTGAGCTGCGACGGGC
CGTGGAGGAGGAGGCAGGAGGGGCTCCTCTCCCCCAGTACCCGCGCCGTC
CAGGGCTCCACCGCTTCTTTCGGGCCTGCTGCGTGGCCTTGCTTGTGACG
GTCGGCTTGCACATCGTCTTTTTTCGTGGGCCGCACCCCTGTACCGGCTG
GTGA
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Synonyms
Publications