EWM28804.1, cds1875 (CDS) Nannochloropsis gaditana

Overview
NameEWM28804.1
Unique Namecds1875
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:361047..361850 -

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Properties
Property NameValue
Protein idEWM28804.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g143.4923.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:361047..361850 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM28804.1 vs. NCBI_GenBank
Match: gi|585111227|gb|EWM28804.1| (hypothetical protein Naga_100002g143 [Nannochloropsis gaditana])

HSP 1 Score: 539.65 bits (1389), Expect = 0.000e+0
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0 
Query:    1 MPDLQNRRLYRLRALSWSCALLLLEKGTCAHGDATSVRRLGGTRPWWTSRTAASVAAEAAAAALPFLAAPAKMSFLQPTVASTESARAAKTVPVPPFRLPQKTWMPWPQPFSDMQTPAKDPRPGQALEIYSEPRNDTGQAPFQFPTHASRGKEGREASDNAGDETADGALALSLLGLGLWIALSALLVIRFVQSEKRREIMLRFWRAIDANPELRRAVEEEAGGAPLPQYPRRPGLHRFFRACCVALLVTVGLHIVFFRGPHPCTGW 267
            MPDLQNRRLYRLRALSWSCALLLLEKGTCAHGDATSVRRLGGTRPWWTSRTAASVAAEAAAAALPFLAAPAKMSFLQPTVASTESARAAKTVPVPPFRLPQKTWMPWPQPFSDMQTPAKDPRPGQALEIYSEPRNDTGQAPFQFPTHASRGKEGREASDNAGDETADGALALSLLGLGLWIALSALLVIRFVQSEKRREIMLRFWRAIDANPELRRAVEEEAGGAPLPQYPRRPGLHRFFRACCVALLVTVGLHIVFFRGPHPCTGW
Sbjct:    1 MPDLQNRRLYRLRALSWSCALLLLEKGTCAHGDATSVRRLGGTRPWWTSRTAASVAAEAAAAALPFLAAPAKMSFLQPTVASTESARAAKTVPVPPFRLPQKTWMPWPQPFSDMQTPAKDPRPGQALEIYSEPRNDTGQAPFQFPTHASRGKEGREASDNAGDETADGALALSLLGLGLWIALSALLVIRFVQSEKRREIMLRFWRAIDANPELRRAVEEEAGGAPLPQYPRRPGLHRFFRACCVALLVTVGLHIVFFRGPHPCTGW 267
[Close]
BLAST of EWM28804.1 vs. NCBI_GenBank
Match: gi|553176795|ref|XP_005852403.1| (hypothetical protein NGA_0705100 [Nannochloropsis gaditana CCMP526] >gi|422296131|gb|EKU23430.1| hypothetical protein NGA_0705100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 522.316 bits (1344), Expect = 0.000e+0
Identity = 260/267 (97.38%), Postives = 261/267 (97.75%), Query Frame = 0 
Query:    1 MPDLQNRRLYRLRALSWSCALLLLEKGTCAHGDATSVRRLGGTRPWWTSRTAASVAAEAAAAALPFLAAPAKMSFLQPTVASTESARAAKTVPVPPFRLPQKTWMPWPQPFSDMQTPAKDPRPGQALEIYSEPRNDTGQAPFQFPTHASRGKEGREASDNAGDETADGALALSLLGLGLWIALSALLVIRFVQSEKRREIMLRFWRAIDANPELRRAVEEEAGGAPLPQYPRRPGLHRFFRACCVALLVTVGLHIVFFRGPHPCTGW 267
            MPDL+NRRLYRLRALSWSCALLLLEKGTCAHGDATSVRRLGGTR WWTSRTAASVAAEAAAAALPFLAAPAK SFL PTVASTESARAAKTVPVPPFRLPQKTWMPWPQPFSDMQTPAKDPRPGQALEIYS PRNDTGQAPFQFPTHASRGKEGREASDNAGDETADGALALSLLGLGLWIALSALLVIRFVQSEKRREIMLRFWRAIDANPELRRAVEEEAGGAPLPQYPRRPGLHRFFRACCVALLVTVGLHIVFF GPHPC GW
Sbjct:    1 MPDLKNRRLYRLRALSWSCALLLLEKGTCAHGDATSVRRLGGTRLWWTSRTAASVAAEAAAAALPFLAAPAKTSFLLPTVASTESARAAKTVPVPPFRLPQKTWMPWPQPFSDMQTPAKDPRPGQALEIYSAPRNDTGQAPFQFPTHASRGKEGREASDNAGDETADGALALSLLGLGLWIALSALLVIRFVQSEKRREIMLRFWRAIDANPELRRAVEEEAGGAPLPQYPRRPGLHRFFRACCVALLVTVGLHIVFFVGPHPCIGW 267
The following BLAST results are available for this feature:
BLAST of EWM28804.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111227|gb|EWM28804.1|0.000e+0100.00hypothetical protein Naga_100002g143 [Nannochlorop... [more]
gi|553176795|ref|XP_005852403.1|0.000e+097.38hypothetical protein NGA_0705100 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1880rna1880Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications