rna188, rna188 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna188
Unique Name	rna188
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1701
Alignment location	CM002455.1:489980..493929 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100013g29.9782.mrna
Orig protein id	gnl\|cribi\|Naga_100013g29.9782
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:489980..493929 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g29	gene179	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna188	rna188-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30494.1	cds188	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:489980..493929+
coding sequence from alignment at CM002455.1:489980..493929+

mRNA sequence

>rna188 ID=rna188|Name=rna188|organism=Nannochloropsis gaditana|type=mRNA|length=1701bp
ATGCAAGGTCATCGTCTCACAATTTTTGTTTCGCCGATGCGCTCCTTACA
TTTTTTTTCAGCGTCGACGTCAATGGTCTCAACCCCTGAAGTCCCAAAAA
AGAGAATATCACAAGCAACATTCGATGAGACAGTGTACGAGAATATGGTT
GACCTCGAAATGGATAGGGCGGATGCCGTCAAGGATGCTTTACAGCAGTT
CACAAGCCAAGGCGTTGACTTGGAGAACATTTGTGTGACACTGAACGAAA
ATGACGGGCGCTGGCTCGAAGAGGTGGACGCACAGCTGACTGCGCTAAAG
AACTGCTTGGATAATGGGACGGATCTCAGCCTACCTCCTTCCTGGAGTCC
TGAGGCCACGCTGGCGGCTCTTCAGGCTCTGCATTCGGCATTGACGGATA
GCGATATTAAGAGAGCAGACAACGCTCGTAAATTGCTTGGGTCAAAAGAT
GCGGTGAATGTAATTGCGCGAATATGGCAAGAATGGGGAGATGAACCTTC
CTGTGTAACCCTGGATCCTGCGGAAGCTGAGGCGATAGCCAAAGCCAGGT
TATTGGCCGTGGCTGTGACCGAGGCTGCGTGCGGCGGGGGTAGTGCAGGA
GACCAGAGCAAGCACGCTTTCCGGCCAACCAGCATGCGCATGCTTTGTCA
AGCCGCTCGGCGAGCACAACTGAGGGAGCAACGCTCCTTTCTCATTGCTT
CTTTATCTCTGGTGCGTGTCTTGTCAACGCGTGCGGAGGATCATAAAGTG
AGCTTCGTTGAGCATGGCGGCTTGGACACACTGGTGGAATGCCTGGAAAA
AGAGGCATGGGCCTCCGACTGCGAAATTGTTCGTGAGGCTTGTGGTGCAA
TCAAGGCTGTCACGGCAGTGGACGATTTTCGGAAAGACTTCAGCGCCTCC
CACACTCATACACGGGCCCTCACGGCCAAAGGCTGCATCCCAGTCCTCCT
GCAAGCTTGCCGTCGATTCGGCGCAGACTCGGACACGGTCGCCACTGGAC
TTGATGCCCTCCGGAATCTGGCCAACAACGAGGAGAGCGTGAACCAGATT
GCCTCCGAGGGGGGAGTGGTTGGGACCGTGCGCGCGCTCCAAGCTCACCT
CTCCCACCCGGCCCTAGCACGGGCGGCCACTGGGCTCTTCCGCAATGTCT
CCGCAGATGACCGGCACAAAACACGTCTGTGTAAGAATGGCGCCGCTCAG
CTGATGCTAGAGGCGATGCGAGAGCACGCACAGGAAAGAAAAATCCAGGA
GCACGGGCTCGCCACACTAGGAGCCATGGCTTTGCGGAGTCCGGACAACT
GCCGCCACCTATTTGGAATGGGCGCCGTGTCGGTAATCTTGGAGGCCCTG
GAACGGCATCCAGAGGCCCGTGCAATACAGCGTCAAGGCTGTTTGGCTGT
GCGGAACATGGTCAGCCGTGTCCCTGAGCTAGGGGAGGCTTTCCTCGAGG
CGGGCGCAGAGCCCTTATTGCGGTTAGCGGGACGATACCAGGAAAGCGTC
GATGAAGCGTACGCTGCTTTGCGAGACCTGAAGTGTGACGTGAAACGTGT
GATCGTGGATCCCTTGACGGGCGAAATCAAGGCTCCAGAAGAGTTCGGCA
GCGCCAAAACTTCCTTCCGGCCACTTTTTGATAGCAGCAACGACATCGAA
GGGGCGGTGCAAGCCGCAATCAATGCCCCTAGTAATTCCTATCGTTTTTA
A

protein sequence of rna188

>rna188-protein ID=rna188-protein|Name=rna188|organism=Nannochloropsis gaditana|type=polypeptide|length=921bp
MSSASTAHTSRPDVQAPSSAATFPAPPPPPTSEPRSASTGVARYHVECDH
HDASRKAAMGVWVMSVAQAQPGSQPQIPRPRREGQVHQQQQQQRQQPQQQ
QQQQQQQQPHQDRQGHSQHQEGDASAAIDSLRAALVVLQEENANLRTHNF
DLSASLVMEEAEQSRLRQDMKKLESEKAFMAQEVREADRMRARAEKEKEL
QRQQHCNQPGAREEMSLSSGSGNEQEGMGKKEKKRRIVGREDGLSASGRG
ASQLSEHKEIGREEMEDAGPDGRKNETSTASDAIVEENDLHACEEALAAL
KCPVPSTSLVLQSLVESLCLLLSTGTPHVRRNNEDTRQMECWWSSAFKEE
TGHSQVLARSLGHNFPTHVRHFGKEADGATEATGGRRFVPLSAFSSSGTC
DASIREGLTNGDNSTMNCSIASSMATQLYLSLWPISSSLFFSPSTSHLMP
DVQQDTDMSSSMLLPIIQSLGAMFPQMHALGTDKVVAALRVARCLLSLCP
GESREMALVSGGHENEGENADRKGDKDTCSSSFMQRFQGSKVDAELLRWA
ATGGMDGEGARQGGSGNKEAIGSFLNRLLELIDWVGEHWKDGHPSYDSTD
PSFPLLQMTSEALAVLLVLCQERNGCFSSLGSFGFSSCWATAWLRRPTLP
LLLEGALRARHVELVDLCLQLTHALSQQSPRLFQALAGLKSGAFLSNVAC
QVFDWHLESMTWPIEGKRGRRARSGETIPFEYKGEKRTSQIDGCEMVPRK
SRLQSPTSSPHSASGLERLCLRMTRFLSRVCISYGTSAVHVFLHAPLLDN
EDKNYSLNHTDTGMQNGHILARLVGVVHQAIHRLLRRTGNPSFFPSDTSQ
EQWQLQRMLARESFELLSLLSANNPAGLSAGLDGSGCRWTLEAVNFRLMN
SLVEGLEDLTDEAENLHMSLQ

mRNA from alignment at CM002455.1:489980..493929+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna188 ID=rna188|Name=rna188|organism=Nannochloropsis gaditana|type=mRNA|length=3950bp|location=Sequence derived from alignment at CM002455.1:489980..493929+ (Nannochloropsis gaditana)
ACCCATCTGTCGACAGTTCTCATGGCTCACATACGGGATGGGTTAAATTT
TGCCACAGGATCGCGCGGCACGCTTTGCTTCTTACGACTTTGCCGTTGCA
TTGACCTcgtcgtccctcctcatcccatcctcctctcgagATACACGAGG
AGCACATCAATGTAATGCACAATGTTACAGTTCTTTCCCCAATAATCAGA
TTTAATGGGTGAGGAGCGTGGTAGTCAGCCGCCCGCCTTGCAATTGCAAA
ACACGCGGGGTTCATTGTCCCGAAACGCGAGTGCCCCCGTtacttcttcc
gcttctatCCCCGATGACGCCGCTTCACTTAAAAACGTCAGCAACAGCTT
CAGTCCCCTGTGCAATGATATTGCCAGTCAATCTGTTGCTAGTGACCCAT
ATGCACGACCGCAGGGGGCGACGCGTTTGATAATCATGGATCCTCGTGCC
TCGGGGGGTGGttatggaggaagtggagggagtggagcaggaagaggaga
aattAAAGGAGGTatcggaggggggagaggaggggcctTGGGAAAAGGTC
AcagggggcaaggaaggggggaaacagGGAGTAAATGCCTAGATCTTGTC
GCGAcagatggaagagaaggtaCATTACGGCAGCAACACCCGCAAACATT
TTCCCGAGACATTGAGAAGTCTACCAACTTCTCGAAAGATCCAACGGCTC
CCAGAAGTATCAGCAGTCAGCAGAGTCAACAATCTGCAGGCGGACGATTG
GGCGGCAGCAACGGATCACGACCGGGCGGGCTCGAGCTCACGAATATACG
CAACTCCCTTCCTAATCCTCCTCGACAAACCTCTAACGATCAGGCTCTCT
TCCACGGCCCTCGGCCGCCGATGAATAGACATGTACCCTTGCACCATAGA
GAACCTTTACTGAGGACTCAGCAACGCCAGCAAACTGTCCAGCACCTGCA
GCATGTGCAGTCAAGGGAGGCCCGGACGAGAGCTGCCGACCAGCGAAGCT
CCGCTATCCCGGTTCCTCCGTCGGGCTTGCGACCTGACACGACAAGCTCT
GCTGCTGGCGACTCATGTCGTCCGCTTCCACCGCACACACAAGCCGCCCA
GACGTACAAGCCCCCTCATCAGCCGCTactttccctgccccccccccccc
gccgaccTCTGAACCCCGAAGCGCGAGCACGGGTGTGGCACGTTATCACG
TCGAATGTGACCACCACGATGCTTCAAGGAAAGCAGCGATGGGAGTATGG
GTCATGTCCGTTGCTCAGGCACAGCCAGGGTCACAGCCACAGATTCCACG
CCCGcgcagagaaggacaagtacaccagcagcaacagcagcagcggcagc
aaccgcagcagcagcagcagcagcagcagcagcagcaaccgCATCAGGAC
CGACAAGGGCACTCGCAGCACCAAGAAGGAGATGCGAGCGCGGCCATTGA
CAGCCTCCGTGCGGCGCTGGTAGTGTTacaggaagaaaatgcaaACCTGC
GGACGCACAACTTCGACTTGAGCGCCTCcttggtgatggaggaggcagag
cagTCACGTTTACGACAGGATATGAAAAAACTGGAAAGTGAGAAGGCATT
CATGGCACAGGAGGTCAGGGAGGCAGACCGTATGCGTGCCCgtgcggaga
aggagaaggagctgcaGCGTCAACAGCATTGCAACCAACCTGGTGCACGC
GAGGAGATGTCGTTATCGTCAGGCAGCGGAAACGAgcaggagggcatggg
caagaaagagaaaaaaagaaggatcGTAGGTCGTGAGGATGGTCTGTCGG
CATCCGGACGCGGGGCAAGCCAGCTTTCAGAACACAAGGAAATaggacgg
gaggagatggaagatgCAGGCCcggatggaaggaaaaatgagaCGTCAAC
GGCAAGCGATGCAATCGTCGAGGAGAACGACCTCCATGCTTGTGAGGAAG
CGCTGGCAGCATTAAAGTGTCCCGTGCCGTCCACATCGCTCGTTCTCCAA
TCCTTGGTCGAGAGCCTGTGTCTTCTGCTGAGTACCGGCACTCCACACGT
TCGAAGAAACAACGAGGATACGCGACAAATGGAATGCTGGTGGAGCAGCG
CCTTCAAGGAAGAAACTGGTCACTCACAAGTGCTCGCTCGCAGCCTAGGG
CACAATTTTCCCACCCACGTGCGCCATTTTGGAAAAGAAGCGGATGGTGC
TACGGAAGCGAccggaggaaggcgattTGTTCCTTTatctgccttctcct
cctctggtaCCTGTGATGCTTCCATCAGGGAGGGCCTCACAAACGGTGAT
AACAGCACTATGAACTGTAGTATCGCCTCTTCTATGGCCACCCAGCTGTA
CCTCTCTCTTtggcccatctcctcttctcttttcttctcacCCTCGACTA
GTCATTTAATGCCGGACGTCCAGCAAGATACTGACATGTCCAGCAGCATG
CTCCTCCCAATTATTCAGAGCCTTGGCGCGATGTTCCCGCAAATGCATGC
GTTAGGCACGGACAAGGTAGTTGCGGCGCTGCGAGTTGCCCGTTGTCTCC
TTAGCCTTTGCCCAGGCGAGAGCCGAGAGATGGCGCTCGTATCCGGAGGG
CATGAGAACGAAGGGGAGAACGCTGATCGTAAGGGGGACAAGGATACATG
CTCGTCTTCGTTCATGCAGCGCTTCCAAGGTTCGAAGGTGGATGCCGAGC
TACTACGATGGGCAgcgacgggggggatggatggagaaggtgcgCGACAA
GGTGGAAGTGGGAACAAGGAGGCGATAGGCTCATTTCTGAATCGATTGCT
CGAATTGATCGACTGGGTGGGTGAGCACTGGAAAGACGGTCACCCATCGT
ACGACTCGACCGacccgtctttccccctccttcaaatGACCTCGGAGGCC
CTCGCCGTTTTACTTGTCCTCTGCCAGGAGCGTAACGGCTGCTTCTCGTC
CCTCGGTTCCTTTGGGTTTTCTTCATGTTGGGCCACGGCCTGGTTGCGCC
GTCCTACTCTGCCTTTACTCTTGGAAGGTGCCCTGAGGGCCCGCCACGTC
GAGCTAGTGGACCTATGCCTCCAATTGACAcacgccctctcccagcaATC
CCCTCGTCTTTTTCAAGCGCTCGCAGGATTGAAATCGGGTGCATTTCTGT
CGAACGTAGCTTGTCAGGTATTTGATTGGCACCTGGAGAGTATGACATGG
CCCATCGAAGGTAAGAGAGGCCGACGTGCGAGGAGCGGTGAGACGATTCC
GTTTGAATACAAGGGCGAGAAAAGAACATCGCAGATTGACGGGTGTGAAA
TGGTACCCCGAAAATCTAGATTGCAGTCTCCAACTTCTTCTCCTCACTCC
GCCTCTGGCCTAGAGCGGCTGTGTCTCCGGATGACACGCTTTCTTTCGCG
TGTTTGTATTTCTTACGGAACCTCAGCAGTacacgtcttcctccacgcgc
ccCTTTTGGATAACGAGGACAAGAATTACAGCCTGAACCACACCGATACT
GGCATGCAAAACGGTCACATACTAGCTCGACTAGTAGGCGTCGTGCACCA
GGCAATCCACAGATTGCTCAGGCGAACCGGGAACCCAAGTTTTTTTCCCT
CAGACACCAGCCAAGAACAATGGCAGCTGCAGCGTATGCTCGCTCGAGAG
TCCTTTGAGTTGTTGTCTCTCCTCAGTGCGAACAACCCTGCGGGCCTGAG
TGCTGGCCTGGACGGGTCGGGCTGCCGGTGGACCCTCGAGGCGGTAAATT
TCCGACTAATGAACAGCTTGGTGGAAGGACTTGAAGATTTGACAGACGAA
GCAGAAAATCTGCACATGTCATTGCAGTAAAAGCGAAGACAAGAACAAAG
AACGCATCGACCACAATGCAGACATCTTCCGAGGCACGCAGTCACGTCGA
GTGGCCAGGCTTAAAGACGGCCAAAAAATGAAATACATGACTGAATGATA

Coding sequence (CDS) from alignment at CM002455.1:489980..493929+

>rna188 ID=rna188|Name=rna188|organism=Nannochloropsis gaditana|type=CDS|length=2766bp|location=Sequence derived from alignment at CM002455.1:489980..493929+ (Nannochloropsis gaditana)
ATGTCGTCCGCTTCCACCGCACACACAAGCCGCCCAGACGTACAAGCCCC
CTCATCAGCCGCTactttccctgcccccccccccccgccgaccTCTGAAC
CCCGAAGCGCGAGCACGGGTGTGGCACGTTATCACGTCGAATGTGACCAC
CACGATGCTTCAAGGAAAGCAGCGATGGGAGTATGGGTCATGTCCGTTGC
TCAGGCACAGCCAGGGTCACAGCCACAGATTCCACGCCCGcgcagagaag
gacaagtacaccagcagcaacagcagcagcggcagcaaccgcagcagcag
cagcagcagcagcagcagcagcaaccgCATCAGGACCGACAAGGGCACTC
GCAGCACCAAGAAGGAGATGCGAGCGCGGCCATTGACAGCCTCCGTGCGG
CGCTGGTAGTGTTacaggaagaaaatgcaaACCTGCGGACGCACAACTTC
GACTTGAGCGCCTCcttggtgatggaggaggcagagcagTCACGTTTACG
ACAGGATATGAAAAAACTGGAAAGTGAGAAGGCATTCATGGCACAGGAGG
TCAGGGAGGCAGACCGTATGCGTGCCCgtgcggagaaggagaaggagctg
caGCGTCAACAGCATTGCAACCAACCTGGTGCACGCGAGGAGATGTCGTT
ATCGTCAGGCAGCGGAAACGAgcaggagggcatgggcaagaaagagaaaa
aaagaaggatcGTAGGTCGTGAGGATGGTCTGTCGGCATCCGGACGCGGG
GCAAGCCAGCTTTCAGAACACAAGGAAATaggacgggaggagatggaaga
tgCAGGCCcggatggaaggaaaaatgagaCGTCAACGGCAAGCGATGCAA
TCGTCGAGGAGAACGACCTCCATGCTTGTGAGGAAGCGCTGGCAGCATTA
AAGTGTCCCGTGCCGTCCACATCGCTCGTTCTCCAATCCTTGGTCGAGAG
CCTGTGTCTTCTGCTGAGTACCGGCACTCCACACGTTCGAAGAAACAACG
AGGATACGCGACAAATGGAATGCTGGTGGAGCAGCGCCTTCAAGGAAGAA
ACTGGTCACTCACAAGTGCTCGCTCGCAGCCTAGGGCACAATTTTCCCAC
CCACGTGCGCCATTTTGGAAAAGAAGCGGATGGTGCTACGGAAGCGAccg
gaggaaggcgattTGTTCCTTTatctgccttctcctcctctggtaCCTGT
GATGCTTCCATCAGGGAGGGCCTCACAAACGGTGATAACAGCACTATGAA
CTGTAGTATCGCCTCTTCTATGGCCACCCAGCTGTACCTCTCTCTTtggc
ccatctcctcttctcttttcttctcacCCTCGACTAGTCATTTAATGCCG
GACGTCCAGCAAGATACTGACATGTCCAGCAGCATGCTCCTCCCAATTAT
TCAGAGCCTTGGCGCGATGTTCCCGCAAATGCATGCGTTAGGCACGGACA
AGGTAGTTGCGGCGCTGCGAGTTGCCCGTTGTCTCCTTAGCCTTTGCCCA
GGCGAGAGCCGAGAGATGGCGCTCGTATCCGGAGGGCATGAGAACGAAGG
GGAGAACGCTGATCGTAAGGGGGACAAGGATACATGCTCGTCTTCGTTCA
TGCAGCGCTTCCAAGGTTCGAAGGTGGATGCCGAGCTACTACGATGGGCA
gcgacgggggggatggatggagaaggtgcgCGACAAGGTGGAAGTGGGAA
CAAGGAGGCGATAGGCTCATTTCTGAATCGATTGCTCGAATTGATCGACT
GGGTGGGTGAGCACTGGAAAGACGGTCACCCATCGTACGACTCGACCGac
ccgtctttccccctccttcaaatGACCTCGGAGGCCCTCGCCGTTTTACT
TGTCCTCTGCCAGGAGCGTAACGGCTGCTTCTCGTCCCTCGGTTCCTTTG
GGTTTTCTTCATGTTGGGCCACGGCCTGGTTGCGCCGTCCTACTCTGCCT
TTACTCTTGGAAGGTGCCCTGAGGGCCCGCCACGTCGAGCTAGTGGACCT
ATGCCTCCAATTGACAcacgccctctcccagcaATCCCCTCGTCTTTTTC
AAGCGCTCGCAGGATTGAAATCGGGTGCATTTCTGTCGAACGTAGCTTGT
CAGGTATTTGATTGGCACCTGGAGAGTATGACATGGCCCATCGAAGGTAA
GAGAGGCCGACGTGCGAGGAGCGGTGAGACGATTCCGTTTGAATACAAGG
GCGAGAAAAGAACATCGCAGATTGACGGGTGTGAAATGGTACCCCGAAAA
TCTAGATTGCAGTCTCCAACTTCTTCTCCTCACTCCGCCTCTGGCCTAGA
GCGGCTGTGTCTCCGGATGACACGCTTTCTTTCGCGTGTTTGTATTTCTT
ACGGAACCTCAGCAGTacacgtcttcctccacgcgcccCTTTTGGATAAC
GAGGACAAGAATTACAGCCTGAACCACACCGATACTGGCATGCAAAACGG
TCACATACTAGCTCGACTAGTAGGCGTCGTGCACCAGGCAATCCACAGAT
TGCTCAGGCGAACCGGGAACCCAAGTTTTTTTCCCTCAGACACCAGCCAA
GAACAATGGCAGCTGCAGCGTATGCTCGCTCGAGAGTCCTTTGAGTTGTT
GTCTCTCCTCAGTGCGAACAACCCTGCGGGCCTGAGTGCTGGCCTGGACG
GGTCGGGCTGCCGGTGGACCCTCGAGGCGGTAAATTTCCGACTAATGAAC
AGCTTGGTGGAAGGACTTGAAGATTTGACAGACGAAGCAGAAAATCTGCA
CATGTCATTGCAGTAA

Synonyms

Publications