rna1875, rna1875 (mRNA) Nannochloropsis gaditana

Overview
Namerna1875
Unique Namerna1875
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length927
Alignment locationCM002458.1:347572..348438 -

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Properties
Property NameValue
Productdimethyladenosine transferase
Orig transcript idgnl|cribi|Naga_100002g149.4802.mrna
Orig protein idgnl|cribi|Naga_100002g149.4802
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:347572..348438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g149gene1791Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28683.1cds1870Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1875rna1875-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1875 ID=rna1875|Name=rna1875|organism=Nannochloropsis gaditana|type=mRNA|length=927bp
ATGGATGGAGCTGAGACGGGGAGCGTTGGCGACTCGGACTCAGGAGGAGG
ACGCAAGAAGATTGTCCGCCCTTGTAGCTCAGCGGAGACGTCACTTTCCA
TGGATGTGACCGCTACTTCTTACCAGGGCACAAATTTCAATCATATGCTC
TCGCACGGAGCTCCAGCGTCGGCAATGGTTGAAACACACGATGGCGAGGG
CAGCCTTTGTCCTTTTCCATTTCAACCGCCGCCACACCAGCAGCATAATC
TACAATACCAACAACCACAGGAGCACCAAATGCAGCAAACGTATTATGGT
CAAATGAATGACGATGGGAACAATTTTTACGATCACTCGCCACAGATGGA
AGGTTTCGAGCCCTTGGGTGCTCCCCAAGAAGCGGCAGGCTCAGACCTGG
GACCTCAACCAATATTCGTGAACCCCAAGCAATACGAACGCATCATGAAA
CGTCGCGAGGCGCGGGCCCGCTTGGAAAACCATCGAAAAATCGCAGCCGA
GCGGAAGCCATTTTTGCATAAATCCAGGCACTTGCACGCTGTCAAAAGGC
CGCGTGGACCCGGAGGTCGTTTTTTGACCAAGGAGGAACGAATCGCATGG
GATGAGGAGCAGGCTCAGTTGGAAGGGACCTCCACGATGGGAGCTGTCCA
TGTTTCTAATGAGATAGCTGCGCTTCCTCATGTGAAATGCCTCACTCGGA
GGGCCAGAGCCCTAGCGTGCACGGGTAGCATGTCGGATGATTGCAGTCTC
CTGGTACATAGTAATGCATATAGGCCGAACGTGATAAGATGCTCTCCCGT
GCGAGCGGCAGAGGGTGTGTACAAGACGCATGTTAATGAAGGCAAGGAGA
GAGCGGCAATCGTGACATGCTGCGCCCCCTGTACGCCCCCTGTACGTGTG
AACGTATGGCAAGGAAGCATCTCTTAG
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protein sequence of rna1875

>rna1875-protein ID=rna1875-protein|Name=rna1875|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MVVQGIVDKAAIRSTDVVMEVGPGTGNLTVKLLDRAKKVVAVEYDVRMVR
EVLKRVEGTDHARSLHVIQGDVLKVALPFFDVCVANIPYQISSPLLFKLL
AHRPMFRCAVIMLQEEFAQRLTAKPGDDLYCRLSVNTQLLAKVDQLMKVG
RNNFRPPPKVDSRVVRIELRNPPPPVNFNEWDGLVRLVFNRKHKTLHAVL
TTKSVLTVLEKNFKTYMALRGKESGEVVAGIEIEGGKTGVPIAGGVKALV
EEVVALPAFEGKRAAKMDLDDFLALLAEFNQRGVHFSS
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mRNA from alignment at CM002458.1:347572..348438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1875 ID=rna1875|Name=rna1875|organism=Nannochloropsis gaditana|type=mRNA|length=867bp|location=Sequence derived from alignment at CM002458.1:347572..348438- (Nannochloropsis gaditana)
ATGGTCGTTCAGGGCATAGTGGATAAAGCTGCAATTCGCAGCACGGACGT
GGTCATGGAAGTAGGCCCAGGTACCGGGAATTTGACGGTGAAATTGCTGG
ATCGGGCGAAGAAAGTTGTGGCAGTAGAATACGACGTGCGGATGGTGAGG
GAGGTGCTAAAACGCGTGGAGGGGACGGACCATGCTAGAAGCCTCCACGT
AATCCAAGGGGATGTGCTCAAGGTAGCCTTGCCCTTTTTTGACGTCTGCG
TCGCCAATATTCCATACCAAATCTCGTCTCCTCTTCTTTTCAAGCTCTTG
GCGCACCGTCCCATGTTCCGCTGCGCCGTGATCATGCTCCAAGAAGAATT
TGCGCAACGCCTGACCGCCAAGCCGGGGGATGACCTGTACTGTCGTCTCT
CGGTGAACACCCAACTGCTTGCAAAGGTCGATCAGCTCATGAAAGTGGGA
CGTAACAATTTTCGTCCCCCTCCGAAGGTAGACTCGCGCGTGGTGCGTAT
TGAATTACGGAACCCCCCCCCGCCGGTAAACTTCAACGAATGGGACGGGC
TCGTGCGTTTGGTCTTCAACCGGAAGCATAAGACATTACACGCGGTGTTG
ACCACTAAGAGTGTTTTGACGGTGCTGGAGAAAAATTTCAAAACGTACAT
GGCATTACGCGGAAAAGAGAGCGGCGAGGTGGTGGCCGGCATAGAGATTG
AGGGAGGGAAGACGGGCGTTCCCATTGCTGGGGGTGTGAAAGCGTTGGTG
GAGGAGGTAGTGGCACTGCCAGCATTCGAAGGGAAACGAGCGGCGAAGAT
GGACTTGGACGATTTTCTTGCCTTGCTTGCCGAGTTCAACCAACGAGGGG
TGCACTTCTCTTCGTGA
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Coding sequence (CDS) from alignment at CM002458.1:347572..348438-

>rna1875 ID=rna1875|Name=rna1875|organism=Nannochloropsis gaditana|type=CDS|length=867bp|location=Sequence derived from alignment at CM002458.1:347572..348438- (Nannochloropsis gaditana)
ATGGTCGTTCAGGGCATAGTGGATAAAGCTGCAATTCGCAGCACGGACGT
GGTCATGGAAGTAGGCCCAGGTACCGGGAATTTGACGGTGAAATTGCTGG
ATCGGGCGAAGAAAGTTGTGGCAGTAGAATACGACGTGCGGATGGTGAGG
GAGGTGCTAAAACGCGTGGAGGGGACGGACCATGCTAGAAGCCTCCACGT
AATCCAAGGGGATGTGCTCAAGGTAGCCTTGCCCTTTTTTGACGTCTGCG
TCGCCAATATTCCATACCAAATCTCGTCTCCTCTTCTTTTCAAGCTCTTG
GCGCACCGTCCCATGTTCCGCTGCGCCGTGATCATGCTCCAAGAAGAATT
TGCGCAACGCCTGACCGCCAAGCCGGGGGATGACCTGTACTGTCGTCTCT
CGGTGAACACCCAACTGCTTGCAAAGGTCGATCAGCTCATGAAAGTGGGA
CGTAACAATTTTCGTCCCCCTCCGAAGGTAGACTCGCGCGTGGTGCGTAT
TGAATTACGGAACCCCCCCCCGCCGGTAAACTTCAACGAATGGGACGGGC
TCGTGCGTTTGGTCTTCAACCGGAAGCATAAGACATTACACGCGGTGTTG
ACCACTAAGAGTGTTTTGACGGTGCTGGAGAAAAATTTCAAAACGTACAT
GGCATTACGCGGAAAAGAGAGCGGCGAGGTGGTGGCCGGCATAGAGATTG
AGGGAGGGAAGACGGGCGTTCCCATTGCTGGGGGTGTGAAAGCGTTGGTG
GAGGAGGTAGTGGCACTGCCAGCATTCGAAGGGAAACGAGCGGCGAAGAT
GGACTTGGACGATTTTCTTGCCTTGCTTGCCGAGTTCAACCAACGAGGGG
TGCACTTCTCTTCGTGA
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Synonyms
Publications