rna1874, rna1874 (mRNA) Nannochloropsis gaditana

Overview
Namerna1874
Unique Namerna1874
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1537
Alignment locationCM002458.1:346336..347463 +

Link to JBrowse

Properties
Property NameValue
Producttranscriptional activator hap2
Orig transcript idgnl|cribi|Naga_100002g150.4874.mrna
Orig protein idgnl|cribi|Naga_100002g150.4874
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:346336..347463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g150gene1790Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1874rna1874-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28755.1cds1869Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1874 ID=rna1874|Name=rna1874|organism=Nannochloropsis gaditana|type=mRNA|length=1537bp
TGTCTTTAGGTTGGTTGACAGGATCATGAGTTTGGAATTCGAATATGGGC
CACCAACCCGGATTGAGGGGCCAGACTCCGCCCCGACCGCGGAGCTAAAG
AGTGAGAAAAGCTTTGCGTTTCTAATGGTACTGATTTCTCTCAATTGGTA
TTATACGTCTTGACACAGATAGTCGTCTTAGGGAATCGGGTCTAGGAGCC
TATTTCTTAAGCACGCGCGCTTGGTTACATTGCTGAGGACTATCTATTCC
TCCTTTTTATTTTCCCAGTAAAGCCATGGGCGGCTGCTTGGAATTCTGGA
ACAATCTCTGTCATATCGACTTATTGGAAGAATGGATTTGGTACAGCTAC
TTCACAGGAGCTTGGCTTTTGGGTCCCTTTATGGCCTTCCTCATTGTTGT
GTACGATTTCTGCTCGGGGTTTGCCTTTCCTTTGTGGCACGTTGAGCCCT
CTAGGGACAAAGCAATTTTCATAACGGGCTGCGATACTGGATTTGGTAGA
TCACTGGCCGTACGTCTCGCTCAAAAAGGCTTCAGAGTCTACGCTGCCTG
CTTGACTGCGAACGGAGTAGAGGAGATCAAGGCAGAATGTAGCACGGTGG
AGACGATGATGCTTGACGTGACAGACGAAAATCAAGTCCAGGAGGCGGCC
GCGCGCGTGGATGCCGAAAATCCTGAGGGTCTTTACGCCCTTGTCAACAA
TGCGGGTGTCGCCAAGTCGGGGCTCATCGATTGGTTTGGACTGTCTGATT
TTCGCTTTTGCATGGAAGTCAATTTTTTTGGAGTCGTCTCTGTGACTAAG
GCCTTCCTTCCACTGATTAAAAGGTGCAAAGGACGCATAGTTGTCGTTTC
TTCCGTTGCTGGGGTCTCATGCGGGTATCCTTTGAGCGCGCCTTACAGTG
CCTCGAAGCATGCGGTCGAGCTCTTCGCCTCCTCTCTGCGCCAAGAGCTC
CGCGCGTGGGGAATTAAAGTCTCCACCATCAATCCCGGCTTTCACCGCAC
AGAGATGAACAAGGTGGCGGTCAAGGGCCTGGAGACCTGCTGGTCCAAGG
TTGATCCTGTCATCCAAGCTCAATATGGTCAGTCCTACTTTGAAGGGTGC
AGAGACTTTGTGAAGACGCACACGGAGGACGTGGTTTTTGACCCCATCAA
CGTCGTGCGGGCCATGGAGCACGCAGTCACATGTACTCGGCCTCGCATTC
AGTACCGTGTGGGCCTCGATGCCAAGTATGGCTTGGTCTGGACACAGATA
TTCCCATTGCGGGTGGGCGAGAAATTAATTTACGCCTTGACAACCAACAA
GAAGATGAGGTCTATCGTGGGTCTCCCTACAGCCCCCAGAGCCGAAGACG
CCCAGGCCGACGCCCCTTTTGGGGATCATCGAGGTTAAATTTAGGTTTAT
CATGTGCTTTCGGGGGGGAAAGTCGTGAGAAATATGTGCGTAAGGGAAAA
ATAACAGAGCATCTATGGACTATAAGGGGTAGCTATTGTTCAGGTCACGC
CAAATATGGGATGTATGACTTTCCCTTACGCTTTTCC
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protein sequence of rna1874

>rna1874-protein ID=rna1874-protein|Name=rna1874|organism=Nannochloropsis gaditana|type=polypeptide|length=308bp
MDGAETGSVGDSDSGGGRKKIVRPCSSAETSLSMDVTATSYQGTNFNHML
SHGAPASAMVETHDGEGSLCPFPFQPPPHQQHNLQYQQPQEHQMQQTYYG
QMNDDGNNFYDHSPQMEGFEPLGAPQEAAGSDLGPQPIFVNPKQYERIMK
RREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAW
DEEQAQLEGTSTMGAVHVSNEIAALPHVKCLTRRARALACTGSMSDDCSL
LVHSNAYRPNVIRCSPVRAAEGVYKTHVNEGKERAAIVTCCAPCTPPVRV
NVWQGSIS
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mRNA from alignment at CM002458.1:346336..347463+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1874 ID=rna1874|Name=rna1874|organism=Nannochloropsis gaditana|type=mRNA|length=1128bp|location=Sequence derived from alignment at CM002458.1:346336..347463+ (Nannochloropsis gaditana)
ATGGATGGAGCTGAGACGGGGAGCGTTGGCGACTCGGactcaggaggagg
acgcaagaAGATTGTCCGCCCTTGTAGCTCAGCGGAGACGTCACTTTCCA
TGGATGTGACCGCTACTTCTTACCAGGGCACAAATTTCAATCATATGCTC
TCGCACGGAGCTCCAGCGTCGGCAATGGTTGAAACACACGATGGCGAGGG
CAGCctttgtccttttccatttcaACCGCCGCCACACCAGCAGCATAATC
TACAATACCAACAACCACAGGAGCACCAAATGCAGCAAACGTATTATGGT
CAAATGAATGACGATGGGAACAATTTTTACGATCACTCGCCACAGATGGA
AGGTTTCGAGCCCTTGGGTGCTCCCCAAGAAGCGGCAGGCTCAGACCTGG
GACCTCAACCAATATTCGTGAACCCCAAGCAATACGAACGCATCATGAAA
CGTCGCGAGGCGCGGGCCCGCTTGGAAAACCATCGAAAAATCGCAGCCGA
GCGGAAGCCATTTTTGCATAAATCCAGGCACTTGCACGCTGTCAAAAGGC
CGCGTGGACCCGGAGGTCGTTTTTTGACCAAGGAGGAACGAATCGCATGG
GATGAGGAGCAGGCTCAGTTGGAAGGGACCTCCACGATGGGAGCTGTCCA
TGTTTCTAATGAGGTCGCGGCAAAGACCTTGTATTCGTCGGCGCAAGCCT
CTATAGCTGCCGGGCCTCCATTGGCTTCGCAACAGGGGTCCAGACACGcg
tccccgcctttctcttctccgctctcttcctcctcctgccttcctccctc
cgcctccacacctgtagctccctccggcccttctTCTTATTGCTCATCCT
CGCCTATCATCTAGATAGCTGCGCTTCCTCATGTGAAATGCCTCACTCGG
AGGGCCAGAGCCCTAGCGTGCACGGGTAGCATGTCGGATGATTGCAGTCT
CCTGGTACATAGTAATGCATATAGGCCGAACGTGATAAGATGCTCTCCCG
TGCGAGCGGCAGAGGGTGTGTACAAGACGCATGTTAatgaaggcaaggag
agagcggcAATCGTGACATGCTGCGCCCCCTGTACGCCCCCTGTACGTGT
GAACGTATGGCAAGGAAGCATCTCTTAG
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Coding sequence (CDS) from alignment at CM002458.1:346336..347463+

>rna1874 ID=rna1874|Name=rna1874|organism=Nannochloropsis gaditana|type=CDS|length=1854bp|location=Sequence derived from alignment at CM002458.1:346336..347463+ (Nannochloropsis gaditana)
ATGGATGGAGCTGAGACGGGGAGCGTTGGCGACTCGGactcaggaggagg
acgcaagaAGATTGTCCGCCCTTGTAGCTCAGCGGAGACGTCACTTTCCA
TGGATGTGACCGCTACTTCTTACCAGGGCACAAATTTCAATCATATGCTC
TCGCACGGAGCTCCAGCGTCGGCAATGGTTGAAACACACGATGGCGAGGG
CAGCctttgtccttttccatttcaACCGCCGCCACACCAGCAGCATAATC
TACAATACCAACAACCACAGGAGCACCAAATGCAGCAAACGTATTATGGT
CAAATGAATGACGATGGGAACAATTTTTACGATCACTCGCCACAGATGGA
AGGTTTCGAGCCCTTGGGTGCTCCCCAAGAAGCGGCAGGCTCAGACCTGG
GACCTCAACCAATATTCGTGAACCCCAAGCAATACGAACGCATCATGAAA
CGTCGCGAGGCGCGGGCCCGCTTGGAAAACCATCGAAAAATCGCAGCCGA
GCGGAAGCCATTTTTGCATAAATCCAGGCACTTGCACGCTGTCAAAAGGC
CGCGTGGACCCGGAGGTCGTTTTTTGACCAAGGAGGAACGAATCGCATGG
GATGAGGAGCAGGCTCAGTTGGAAGGGACCTCCACGATGGGAGCTGTCCA
TGTTTCTAATGAGATAGCTGCGCTTCCTCATGTGAAATGCCTCACTCGGA
GGGCCAGAGCCCTAGCGTGCACGGGTAGCATGTCGGATGATTGCAGTCTC
CTGGTACATAGTAATGCATATAGGCCGAACGTGATAAGATGCTCTCCCGT
GCGAGCGGCAGAGGGTGTGTACAAGACGCATGTTAatgaaggcaaggaga
gagcggcAATCGTGACATGCTGCGCCCCCTGTACGCCCCCTGTACGTGTG
AACGTATGGCAAGGAAGCATCTCTTAGATGGATGGAGCTGAGACGGGGAG
CGTTGGCGACTCGGactcaggaggaggacgcaagaAGATTGTCCGCCCTT
GTAGCTCAGCGGAGACGTCACTTTCCATGGATGTGACCGCTACTTCTTAC
CAGGGCACAAATTTCAATCATATGCTCTCGCACGGAGCTCCAGCGTCGGC
AATGGTTGAAACACACGATGGCGAGGGCAGCctttgtccttttccatttc
aACCGCCGCCACACCAGCAGCATAATCTACAATACCAACAACCACAGGAG
CACCAAATGCAGCAAACGTATTATGGTCAAATGAATGACGATGGGAACAA
TTTTTACGATCACTCGCCACAGATGGAAGGTTTCGAGCCCTTGGGTGCTC
CCCAAGAAGCGGCAGGCTCAGACCTGGGACCTCAACCAATATTCGTGAAC
CCCAAGCAATACGAACGCATCATGAAACGTCGCGAGGCGCGGGCCCGCTT
GGAAAACCATCGAAAAATCGCAGCCGAGCGGAAGCCATTTTTGCATAAAT
CCAGGCACTTGCACGCTGTCAAAAGGCCGCGTGGACCCGGAGGTCGTTTT
TTGACCAAGGAGGAACGAATCGCATGGGATGAGGAGCAGGCTCAGTTGGA
AGGGACCTCCACGATGGGAGCTGTCCATGTTTCTAATGAGATAGCTGCGC
TTCCTCATGTGAAATGCCTCACTCGGAGGGCCAGAGCCCTAGCGTGCACG
GGTAGCATGTCGGATGATTGCAGTCTCCTGGTACATAGTAATGCATATAG
GCCGAACGTGATAAGATGCTCTCCCGTGCGAGCGGCAGAGGGTGTGTACA
AGACGCATGTTAatgaaggcaaggagagagcggcAATCGTGACATGCTGC
GCCCCCTGTACGCCCCCTGTACGTGTGAACGTATGGCAAGGAAGCATCTC
TTAG
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Synonyms
Publications