EWM28755.1, cds1869 (CDS) Nannochloropsis gaditana

Overview
NameEWM28755.1
Unique Namecds1869
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:346336..346998 +
Alignment locationCM002458.1:347200..347463 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28755.1
Producttranscriptional activator hap2
Orig transcript idgnl|cribi|Naga_100002g150.4874.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:346336..346998 +
CM002458.1supercontigCM002458.1:347200..347463 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR001289TF_CBFB
Homology
BLAST of EWM28755.1 vs. NCBI_GenBank
Match: gi|585111178|gb|EWM28755.1| (transcriptional activator hap2 [Nannochloropsis gaditana])

HSP 1 Score: 648.277 bits (1671), Expect = 0.000e+0
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0
Query:    1 MDGAETGSVGDSDSGGGRKKIVRPCSSAETSLSMDVTATSYQGTNFNHMLSHGAPASAMVETHDGEGSLCPFPFQPPPHQQHNLQYQQPQEHQMQQTYYGQMNDDGNNFYDHSPQMEGFEPLGAPQEAAGSDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTSTMGAVHVSNEIAALPHVKCLTRRARALACTGSMSDDCSLLVHSNAYRPNVIRCSPVRAAEGVYKTHVNEGKERAAIVTCCAPCTPPVRVNVWQGSIS 308
            MDGAETGSVGDSDSGGGRKKIVRPCSSAETSLSMDVTATSYQGTNFNHMLSHGAPASAMVETHDGEGSLCPFPFQPPPHQQHNLQYQQPQEHQMQQTYYGQMNDDGNNFYDHSPQMEGFEPLGAPQEAAGSDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTSTMGAVHVSNEIAALPHVKCLTRRARALACTGSMSDDCSLLVHSNAYRPNVIRCSPVRAAEGVYKTHVNEGKERAAIVTCCAPCTPPVRVNVWQGSIS
Sbjct:    1 MDGAETGSVGDSDSGGGRKKIVRPCSSAETSLSMDVTATSYQGTNFNHMLSHGAPASAMVETHDGEGSLCPFPFQPPPHQQHNLQYQQPQEHQMQQTYYGQMNDDGNNFYDHSPQMEGFEPLGAPQEAAGSDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTSTMGAVHVSNEIAALPHVKCLTRRARALACTGSMSDDCSLLVHSNAYRPNVIRCSPVRAAEGVYKTHVNEGKERAAIVTCCAPCTPPVRVNVWQGSIS 308          
BLAST of EWM28755.1 vs. NCBI_GenBank
Match: gi|1024091446|gb|KZV83013.1| (hypothetical protein EXIGLDRAFT_626308 [Exidia glandulosa HHB12029])

HSP 1 Score: 104.375 bits (259), Expect = 2.202e-23
Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 0
Query:  130 GSDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTSTMG 214
            G +L  +P++VN KQY RI+KRR ARARLE   +++ +RKP+LH+SRH HA++RPRGPGGRFLT EER A +  ++   G+++ G
Sbjct:   78 GEELDEEPLYVNAKQYNRILKRRAARARLEELHRLSRQRKPYLHESRHKHAMRRPRGPGGRFLTAEERAALENAKSAASGSTSPG 162          
BLAST of EWM28755.1 vs. NCBI_GenBank
Match: gi|1024098049|gb|KZV89397.1| (hypothetical protein EXIGLDRAFT_618285 [Exidia glandulosa HHB12029])

HSP 1 Score: 103.605 bits (257), Expect = 4.022e-23
Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 0
Query:  130 GSDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTSTMG 214
            G +L  +P++VN KQY RI+KRR ARARLE   +++ +RKP+LH+SRH HA++RPRGPGGRFLT EER A +  ++   G+++ G
Sbjct:   77 GEELDEEPLYVNAKQYNRILKRRAARARLEELHRLSRQRKPYLHESRHKHAMRRPRGPGGRFLTAEERAALENAKSAASGSTSPG 161          
BLAST of EWM28755.1 vs. NCBI_GenBank
Match: gi|576985476|gb|EUC58212.1| (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B, partial [Rhizoctonia solani AG-3 Rhs1AP])

HSP 1 Score: 101.679 bits (252), Expect = 3.155e-22
Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = 0
Query:   83 NLQYQQPQEHQMQQTYYGQMNDDGNNFYDH---SPQMEG---FEPLGAPQEAAGSDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTS 211
            +L+Y QP ++  QQ Y         +F      +P  +      P  A Q+     L  +P++VN KQY RI+KRR ARARLE   +++ ERKP+LH+SRH HA++RPRGPGGRFLT +E  A D +     GT+
Sbjct:   68 DLEYSQPDQYS-QQEYVPPPPPPATSFAPSETLAPAADSGSSISPTTAQQDEDTEALDEEPLYVNAKQYHRILKRRGARARLEEVHRLSKERKPYLHESRHKHAMRRPRGPGGRFLTADEIAALDAKGGAQPGTN 201          
BLAST of EWM28755.1 vs. NCBI_GenBank
Match: gi|660966880|gb|KEP51272.1| (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B [Rhizoctonia solani 123E])

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-21
Identity = 57/135 (42.22%), Postives = 77/135 (57.04%), Query Frame = 0
Query:   83 NLQYQQPQEHQMQQTYYGQMNDDGNNFYDH---SPQMEG---FEPLGAPQEAAGSDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTS 211
            +L+Y QP   Q  Q Y         +F      +P  +      P  A Q+     L  +P++VN KQY RI+KRR ARARLE   +++ ERKP+LH+SRH HA++RPRGPGGRFLT +E  A D +     GT+
Sbjct:   77 DLEYSQPD--QYSQEYVPPPPPPATSFAPSETLAPAADSGSSISPTTAQQDEDTEALDEEPLYVNAKQYHRILKRRGARARLEEVHRLSKERKPYLHESRHKHAMRRPRGPGGRFLTADEIAALDAKGGAQPGTN 209          
BLAST of EWM28755.1 vs. NCBI_GenBank
Match: gi|1021059614|emb|SAM04399.1| (hypothetical protein [Absidia glauca])

HSP 1 Score: 99.7525 bits (247), Expect = 3.592e-21
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 0
Query:  125 PQEAAGSDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQL 207
            P  A GSD   +P++VN KQY RI+KRR ARARLE   ++A  RKP+LH+SRH HA++RPRGPGGRFLT +E IA  E Q +L
Sbjct:  112 PPAATGSD---EPLYVNAKQYHRILKRRAARARLEEMHRVAKARKPYLHESRHRHAMRRPRGPGGRFLTAQE-IAELESQGKL 190          
BLAST of EWM28755.1 vs. NCBI_GenBank
Match: gi|443923538|gb|ELU42758.1| (CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B domain-containing protein [Rhizoctonia solani AG-1 IA])

HSP 1 Score: 97.8265 bits (242), Expect = 3.802e-21
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 0
Query:  121 PLGAPQEAAGSDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTSTMGAVHVSNEIA 223
            P  A Q+     L  +P++VN KQY RI+KRR ARARLE   +++ ERKP+LH+SRH HA++RPRGPGGRFLT EE  A + +     GT+     +V+  +A
Sbjct:   20 PTAAEQDDEHEVLDEEPLYVNAKQYHRILKRRSARARLEEVHRLSKERKPYLHESRHKHAMRRPRGPGGRFLTAEEIAALESKGGAQPGTNPAPRANVTPHLA 122          
BLAST of EWM28755.1 vs. NCBI_GenBank
Match: gi|598049057|ref|XP_007353901.1| (hypothetical protein AURDEDRAFT_32547, partial [Auricularia subglabra TFB-10046 SS5] >gi|393230359|gb|EJD37966.1| hypothetical protein AURDEDRAFT_32547, partial [Auricularia subglabra TFB-10046 SS5])

HSP 1 Score: 94.3597 bits (233), Expect = 5.525e-21
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 0
Query:  133 LGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQ 204
            L  +P++VN KQY RI+KRR ARARLE   +++ +RKP+LH+SRH HA++RPRGPGGRFLT EER A +  Q
Sbjct:    1 LDDEPLYVNAKQYNRIIKRRLARARLEELHRLSRQRKPYLHESRHKHAMRRPRGPGGRFLTAEERAALERSQ 72          
BLAST of EWM28755.1 vs. NCBI_GenBank
Match: gi|751832886|emb|CEL61321.1| (Transcriptional activator HAP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HAP2 PE=1 SV=1 [Rhizoctonia solani AG-1 IB])

HSP 1 Score: 98.2117 bits (243), Expect = 8.027e-21
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 0
Query:  121 PLGAPQEAAGSDLGPQPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTS 211
            P  A QE     L  +P++VN KQY RI+KRR ARARLE   +++ ERKP+LH+SRH HA++RPRGPGGRFLT +E  A + +     GT+
Sbjct:  125 PTAAEQEDDPEALDEEPLYVNAKQYHRILKRRTARARLEEVHRLSKERKPYLHESRHKHAMRRPRGPGGRFLTADEIAALESKGGAQPGTN 215          
BLAST of EWM28755.1 vs. NCBI_GenBank
Match: gi|511002132|gb|EPB83577.1| (hypothetical protein HMPREF1544_09679 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 97.4413 bits (241), Expect = 2.083e-20
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 0
Query:  114 PQMEGFEPLGA-------PQEAAGSDLGP--QPIFVNPKQYERIMKRREARARLENHRKIAAERKPFLHKSRHLHAVKRPRGPGGRFLTKEERIAWDEEQAQLEGTSTMGAVHVSNEIAAL 225
            PQ  G+ P+ A       PQ A  +   P  +P++VN KQY RI+KRR ARA+LE   K++  RKP+LH+SRH HA++RPRGPGGRFLT +E +   E   ++ G S+  A     +  AL
Sbjct:   66 PQTLGYRPMDAATAASAVPQPAQNAAEQPSEEPLYVNAKQYHRILKRRAARAKLEELNKLSKARKPYLHESRHKHAMRRPRGPGGRFLTAKE-VEELERTGKMPGQSSHDAAKSETKTEAL 185          
The following BLAST results are available for this feature:
BLAST of EWM28755.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111178|gb|EWM28755.1|0.000e+0100.00transcriptional activator hap2 [Nannochloropsis ga... [more]
gi|1024091446|gb|KZV83013.1|2.202e-2354.12hypothetical protein EXIGLDRAFT_626308 [Exidia gla... [more]
gi|1024098049|gb|KZV89397.1|4.022e-2354.12hypothetical protein EXIGLDRAFT_618285 [Exidia gla... [more]
gi|576985476|gb|EUC58212.1|3.155e-2242.22CCAAT-binding transcription factor (CBF-B/NF-YA) s... [more]
gi|660966880|gb|KEP51272.1|1.337e-2142.22CCAAT-binding transcription factor (CBF-B/NF-YA) s... [more]
gi|1021059614|emb|SAM04399.1|3.592e-2160.24hypothetical protein [Absidia glauca][more]
gi|443923538|gb|ELU42758.1|3.802e-2148.54CCAAT-binding transcription factor (CBF-B/NF-YA) s... [more]
gi|598049057|ref|XP_007353901.1|5.525e-2161.11hypothetical protein AURDEDRAFT_32547, partial [Au... [more]
gi|751832886|emb|CEL61321.1|8.027e-2152.75Transcriptional activator HAP2 OS=Saccharomyces ce... [more]
gi|511002132|gb|EPB83577.1|2.083e-2044.63hypothetical protein HMPREF1544_09679 [Mucor circi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1874rna1874Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications