rna1873, rna1873 (mRNA) Nannochloropsis gaditana

Overview
Namerna1873
Unique Namerna1873
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2188
Alignment locationCM002458.1:344558..346094 +

Link to JBrowse

Properties
Property NameValue
Productretinol retinaldehyde reductase
Orig transcript idgnl|cribi|Naga_100002g151.4814.mrna
Orig protein idgnl|cribi|Naga_100002g151.4814
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:344558..346094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g151gene1789Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1873rna1873-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28695.1cds1868Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1873 ID=rna1873|Name=rna1873|organism=Nannochloropsis gaditana|type=mRNA|length=2188bp
GTTGCAAACGGTAAACGATAATCCGTTGCGCATTCTAAGGAGGCAAAAGC
ACGAATTATGCACCAACGCCTTTCTCTCACCACTCGGGCTCCCTTGTAAA
TTTGAATGGCCTTCCAAATACAATCTTGACGCATAAAGCTTACCACGTGA
ACCATCCCTTTTTTTTGTGCTGAGGCCTTAATAAAGTACCTGAATTTTTC
TCGTTCCTCTCCAGAGCACGTGGGTCGGGGGCTTCGAATACACCCCACAC
GGCTCGCGCGTCCTGAATTCCCAGGGCTCATAAAGGCTTTTACACGTCAC
AACACATAGGGACCACATAAGAATGGGGTTGATCAACTGGGCGAACAATG
TCGCTCACATTCCCGTTTTTGAAGACATGTGCTACTACAATTTTTTCTTC
TGGGCCTGGTTCTGGGGGCCTCTGTTGGGCGCCTTGGTTTTTCTACACGA
CGCCACCACAGGTTTTTTTTTCTCTATCTTTTACGTTGAACCTAGTGAAG
ACAAAGTCGTTGTGATCACGGGCTGTGACACGGGGTTTGGCAAGTCTCTA
GCCTTGGATCTTGGGAAAAAGGGATTCAAAGTATATGCCAGCTGCCTTAC
TCAGAGATCCGCCGACGAGCTGAAGAAGGAGTGTGACGCCCTTCAGACGA
TCATTCTGGATGTAACGAAAGAGGATCAAGTGGCCAGTGTAGCGGCGCGG
ATAAGTGCTGCACATCCCCAAGGAATCTTCGCTTTGGTCAACAATGCCGG
AGTCTCGCGGGCAGGTCTGATCGATTGGCTCAACATGTCCGATTTCCGCT
TTTGCATGGAAGTGAACTATTTCTCAGTTGTCTCGGTCACCAAGGCTTTC
CTACCCTCTTTGAAAAAGAGCAAAGGCCGCATCATCATGATGTCCTCTGC
GGCAGGCGTGGCCTGTGGGTACCCAGTAACCTGTGCGTACTCTTCCTCGA
AACACGCGCTTGAGCTCTTCGCATCGGCACTACGGCAAGAACTTCGCACC
TGGGGTATCACAGTCTCAACGATTAACCCTGGCTTCCATCGGACAGAAAT
CAACCACAACGCCGCCGGTGCATTGAAAGCCACTTTTGAGAAAGCACCTC
GGGAGATCCAGGAGGAATACGGAGAAGAATATTTAGGTGCGACTGCAGAG
GCCACGACACGCTTCACCGAGACTCAAGCATTGGATCCGAAAAATGTCAT
TCGAGCCTACGTCCACGCGATCACCTCGACCCGACCCAAGGTCCAGTACC
GCGTAGGTATTGACGCCAAGGGCCTCTTCCCTTTCCTGCAAATCTTCCCC
TTGCGGGTGGGGGAGATCTGCGCGTATTATGCATCGACAACGAGTGGTAT
GCGAGTGGTTCGTGGGGCCCGTTGGGACCAGGGTAAAGCACCTGTAGGCA
TGTCAACGACTGATACCATCCCGGAGGCGTGAGGTGACGGCTGTCTTGAA
GGCTTTGACGTCCTGTGGTATGGTTAGTGTGTGTACTGAAACAGATGTTT
ATAGGGGTGGAGCACAATGCATGGGATTATACACGTGCGCGTCATACACA
GAATCACATGGAGCTACAGGGATACAGATATTTTCGTGTGATCTCAGACT
TGATAGGCTTGTTGACGATCATAGGGGCTTATAGGGACTTGTCTCAATAA
ATAATGCAGTGGACATTCTGATTGTACATGATGCGGGTAATAGGGATTTT
GTAAGGACCATGGGTATATATACGTGATTGCTGAAGATCATGATATTCGG
AGAGAAGAGGTGAAGTCTGTGGGATAATGTGTCAGTGACCTTATGAAATC
TAGGGAAAGAGGAGAAGGGCCTCCGACTTTAAATCGTAGGAAAGTACGGG
GATTAGAATTTTCAGGAAATGGTATCACTTGCTTATAAGAGTGCGAGAAA
AAAAAGAGACGACAGGGGGGGTTTAAAAAGCTGATTTGTAGTCTCCGCAA
CAAAGCCTACGGAGCAGTTTGTCTTGTGCACTTACGAACCATGCTTGCTC
CGTTTCCCCCAAAATCCATTTCTTCATACCATTAATTCAAAAAAGAACTA
TAAAAATCCGACACCAACTATATCCGCAGTGTCCTTGTGCCCGGACTGTG
GCATGCCACACGTACACGTTGGCCAATTGAGCTTTTATGTTCCCAAATTG
AGGATAATTATCTCTGGCAGTCAACCCGGTCAAATTGT
back to top

protein sequence of rna1873

>rna1873-protein ID=rna1873-protein|Name=rna1873|organism=Nannochloropsis gaditana|type=polypeptide|length=370bp
MGGCLEFWNNLCHIDLLEEWIWYSYFTGAWLLGPFMAFLIVVYDFCSGFA
FPLWHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEE
IKAECSTVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGL
IDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCG
YPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVK
GLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHA
VTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNKKMRSIVGL
PTAPRAEDAQADAPFGDHRG
back to top

mRNA from alignment at CM002458.1:344558..346094+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1873 ID=rna1873|Name=rna1873|organism=Nannochloropsis gaditana|type=mRNA|length=1537bp|location=Sequence derived from alignment at CM002458.1:344558..346094+ (Nannochloropsis gaditana)
TGTCTTTAGGTTGGTTGACAGGATCATGAGTTTGGAATTCGAATATGGGC
CACCAACCCGGATTGAGGGGCCAGACTCCGCCCCGACCGCGGAGCTAAAG
AGTGAGAAAAGCTTTGCGTTTCTAATGGTACTGATTTCTCTCAATTGGTA
TTATACGTCTTGACACAGATAGTCGTCTTAGGGAATCGGGTCTAGGAGCC
TATTTCTTAAGCACGCGCGCTTGGTTACATTGCTGAGGACTATCTATTCC
TCCTTTTTATTTTCCCAGTAAAGCCATGGGCGGCTGCTTGGAATTCTGGA
ACAATCTCTGTCATATCGACTTATTGGAAGAATGGATTTGGTACAGCTAC
TTCACAGGAGCTTGGCTTTTGGGTCCCTTTATGGCCTTCCTCATTGTTGT
GTACGATTTCTGCTCGGGGTTTGCCTTTCCTTTGTGGCACGTTGAGCCCT
CTAGGGACAAAGCAATTTTCATAACGGGCTGCGATACTGGATTTGGTAGA
TCACTGGCCGTACGTCTCGCTCAAAAAGGCTTCAGAGTCTACGCTGCCTG
CTTGACTGCGAACGGAGTAGAGGAGATCAAGGCAGAATGTAGCACGGTGG
AGACGATGATGCTTGACGTGACAGACGAAAATCAAGtccaggaggcggcc
gcgcgCGTGGATGCCGAAAATCCTGAGGGTCTTTACGCCCTTGTCAACAA
TGCGGGTGTCGCCAAGTCGGGGCTCATCGATTGGTTTGGACTGTCTGATT
TTCGCTTTTGCATGGAAGTCAATTTTTTTGGAGTCGTCTCTGTGACTAAG
GCCTTCCTTCCACTGATTAAAAGGTGCAAAGGACGCATAGTTGTCGTTTC
TTCCGTTGCTGGGGTCTCATGCGGGTATCCTTTGAGCGCGCCTTACAGTG
CCTCGAAGCATGCGGTCGagctcttcgcctcctctctgcgCCAAGAGCTC
CGCGCGTGGGGAATTAAAGTCTCCACCATCAATCCCGGCTTTCACCGCAC
AGAGATGAACAAGGTGGCGGTCAAGGGCCTGGAGACCTGCTGGTCCAAGG
TTGATCCTGTCATCCAAGCTCAATATGGTCAGTCCTACTTTGAAGGGTGC
AGAGACTTTGTGAAGACGCACACGGAGGACGTGGTTTTTGACCCCATCAA
CGTCGTGCGGGCCATGGAGCACGCAGTCACATGTACTCGGCCTCGCATTC
AGTACCGTGTGGGCCTCGATGCCAAGTATGGCTTGGTCTGGACACAGATA
TTCCCATTGCGGGTGGGCGAGAAATTAATTTACGCCTTGACAACCAACAA
GAAGATGAGGTCTATCGTGGGTCTCCCTACAGCCCCCAGAGCCGAAGACG
CCCAGGCCGACGCCCCTTTTGGGGATCATCGAGGTTAAATTTAGGTTTAT
CATGTGCTTTCGGGGGGGAAAGTCGTGAGAAATATGTGCGTAAGGGAAAA
ATAACAGAGCATCTATGGACTATAAGGGGTAGCTATTGTTCAGGTCACGC
CAAATATGGGATGTATGACTTTCCCTtacgcttttcc
back to top

Coding sequence (CDS) from alignment at CM002458.1:344558..346094+

>rna1873 ID=rna1873|Name=rna1873|organism=Nannochloropsis gaditana|type=CDS|length=1113bp|location=Sequence derived from alignment at CM002458.1:344558..346094+ (Nannochloropsis gaditana)
ATGGGCGGCTGCTTGGAATTCTGGAACAATCTCTGTCATATCGACTTATT
GGAAGAATGGATTTGGTACAGCTACTTCACAGGAGCTTGGCTTTTGGGTC
CCTTTATGGCCTTCCTCATTGTTGTGTACGATTTCTGCTCGGGGTTTGCC
TTTCCTTTGTGGCACGTTGAGCCCTCTAGGGACAAAGCAATTTTCATAAC
GGGCTGCGATACTGGATTTGGTAGATCACTGGCCGTACGTCTCGCTCAAA
AAGGCTTCAGAGTCTACGCTGCCTGCTTGACTGCGAACGGAGTAGAGGAG
ATCAAGGCAGAATGTAGCACGGTGGAGACGATGATGCTTGACGTGACAGA
CGAAAATCAAGtccaggaggcggccgcgcgCGTGGATGCCGAAAATCCTG
AGGGTCTTTACGCCCTTGTCAACAATGCGGGTGTCGCCAAGTCGGGGCTC
ATCGATTGGTTTGGACTGTCTGATTTTCGCTTTTGCATGGAAGTCAATTT
TTTTGGAGTCGTCTCTGTGACTAAGGCCTTCCTTCCACTGATTAAAAGGT
GCAAAGGACGCATAGTTGTCGTTTCTTCCGTTGCTGGGGTCTCATGCGGG
TATCCTTTGAGCGCGCCTTACAGTGCCTCGAAGCATGCGGTCGagctctt
cgcctcctctctgcgCCAAGAGCTCCGCGCGTGGGGAATTAAAGTCTCCA
CCATCAATCCCGGCTTTCACCGCACAGAGATGAACAAGGTGGCGGTCAAG
GGCCTGGAGACCTGCTGGTCCAAGGTTGATCCTGTCATCCAAGCTCAATA
TGGTCAGTCCTACTTTGAAGGGTGCAGAGACTTTGTGAAGACGCACACGG
AGGACGTGGTTTTTGACCCCATCAACGTCGTGCGGGCCATGGAGCACGCA
GTCACATGTACTCGGCCTCGCATTCAGTACCGTGTGGGCCTCGATGCCAA
GTATGGCTTGGTCTGGACACAGATATTCCCATTGCGGGTGGGCGAGAAAT
TAATTTACGCCTTGACAACCAACAAGAAGATGAGGTCTATCGTGGGTCTC
CCTACAGCCCCCAGAGCCGAAGACGCCCAGGCCGACGCCCCTTTTGGGGA
TCATCGAGGTTAA
back to top
Synonyms
Publications