EWM28695.1, cds1868 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28695.1 vs. NCBI_GenBank
Match: gi|585111118|gb|EWM28695.1| (retinol retinaldehyde reductase [Nannochloropsis gaditana]) HSP 1 Score: 770.77 bits (1989), Expect = 0.000e+0 Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 0
Query: 1 MGGCLEFWNNLCHIDLLEEWIWYSYFTGAWLLGPFMAFLIVVYDFCSGFAFPLWHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECSTVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNKKMRSIVGLPTAPRAEDAQADAPFGDHRG 370
MGGCLEFWNNLCHIDLLEEWIWYSYFTGAWLLGPFMAFLIVVYDFCSGFAFPLWHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECSTVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNKKMRSIVGLPTAPRAEDAQADAPFGDHRG
Sbjct: 1 MGGCLEFWNNLCHIDLLEEWIWYSYFTGAWLLGPFMAFLIVVYDFCSGFAFPLWHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECSTVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNKKMRSIVGLPTAPRAEDAQADAPFGDHRG 370
BLAST of EWM28695.1 vs. NCBI_GenBank
Match: gi|585111089|gb|EWM28666.1| (retinol retinaldehyde reductase [Nannochloropsis gaditana]) HSP 1 Score: 407.912 bits (1047), Expect = 1.450e-138 Identity = 193/364 (53.02%), Postives = 257/364 (70.60%), Query Frame = 0
Query: 3 GCLEFWNNLCHIDLLEEWIWYSYFTGAWLLGPFMAFLIVVYDFCSGFAFPLWHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECSTVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNKKMRSIVGLPTAPRAEDAQADAPFG 366
G + + NN+ HI + E+ +Y++F AW GP + L+ ++D +GF F +++VEPS DK + ITGCDTGFG+SLA+ L +KGF+VYA+CLT +E+K EC ++T++LDVT E+QV AAR+ A +P+G++ALVNNAGV+++GLIDW +SDFRFCMEVN+F VVSVTKAFLP +K+ KGRI+++SS AGV+CGYP++ YS+SKHA+ELFAS+LRQELR WGI VSTINPGFHRTE+N A L+ + K IQ +YG+ Y + TE DP NV+RA HA+T TRP++QYRVG+DAK + QIFPLRVGE Y +T MR + G A Q AP G
Sbjct: 2 GLINWANNVAHIPVFEDMCYYNFFFWAWFWGPLLGALVFLHDATTGFFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKECDALQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGMRVVRG------ARWDQGKAPVG 359
BLAST of EWM28695.1 vs. NCBI_GenBank
Match: gi|585106696|gb|EWM25060.1| (serine threonine-protein kinase dclk3 [Nannochloropsis gaditana]) HSP 1 Score: 247.669 bits (631), Expect = 9.246e-70 Identity = 128/336 (38.10%), Postives = 197/336 (58.63%), Query Frame = 0
Query: 5 LEFWNNLCHIDLLEEWIWYSYFTGAWLLGPFMAFLIVVYDFCSGFAFPL-WHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECS----TVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLI 335
L N++ H+ ++++ W+ Y LLGP A +++ + L +E + +A+ ITGCDTGFG LA+ L +KG+RVYA CLT V E+K + + ++ ++++DVT + + ++ E+P+ L+A+V NAGV + GL+DW L+ +R MEVN F +++ KA LPL+K KGRIV V+S+AG+ G P + Y+ASKHA E F++SLR EL WGI+V T+NP FHRT ++ A + ++ + +D QA+YG Y + T D +DP +VV + A T PR QY VG DA + L+ P EK++
Sbjct: 1211 LNLMNDIMHLPIVDDIAWHLYHFVRLLLGPLWALGLLISFLVKLLSGALVTRLEQPKGRAVLITGCDTGFGYDLAIALVKKGWRVYAGCLTQAAVAELKTKAAGSAGSMVSVLMDVTKQADIDRVVEQIAKESPKQLFAVVCNAGVGRGGLVDWTPLATYRAIMEVNLFAMIATCKACLPLLKESKGRIVNVTSMAGIFLGAPCMSAYAASKHAAEAFSTSLRFELEGWGIRVVTVNPSFHRTRISTNAAETVKQAYDDLDAKTQAEYGLEYLRAVQKLTSDQT-DGCWDPRHVVNTLVRATTAVSPRTQYIVGADATFCLLPLMNLPTPDIEKIV 1545
BLAST of EWM28695.1 vs. NCBI_GenBank
Match: gi|260805510|ref|XP_002597630.1| (retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae] >gi|229282895|gb|EEN53642.1| retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae]) HSP 1 Score: 216.468 bits (550), Expect = 3.873e-64 Identity = 118/291 (40.55%), Postives = 175/291 (60.14%), Query Frame = 0
Query: 55 HVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECST-VETMMLDVTDENQVQEAAARVD-AENPEGLYALVNNAGVAKSGL--IDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMN--KVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALT 339
+V DK + ITGCDTGFG LA RL Q G RV+A CLT GV E++ CS ++ + +DVT + V+ A V+ A +GL+ LVNNAG+ SG+ ++W ++D++ ++VN G++ VT+ FLPL+KR +GR+V V+SVAG PYS SK VE F+ SLR+ +R +G+KV I P F RT +N +V ++ L+ W + P + +YGQ + + +D + + DP+ VV AMEHA+ TRPR +Y VG DA V P +G+ ++ L+
Sbjct: 28 YVSQLTDKTVLITGCDTGFGNLLARRLDQLGLRVFAGCLTEAGVAELRQSCSERLQPIRMDVTSSDSVKTAFRVVEKAVGSKGLWGLVNNAGIVGSGVGAMEWSTVADYQAVIDVNLLGMIDVTRTFLPLLKRSRGRVVNVASVAG-RLALNYITPYSVSKFGVEAFSDSLRRSMRCFGVKVHIIEPSFFRTNINNMEVIIRLLDNIWQRQSPETKKEYGQEFLQATKDVI-IAGDGRKLDPVAVVDAMEHALCATRPRSRYVVGWDAWLVFVPISWLPTELGDLVLRVLS 316
BLAST of EWM28695.1 vs. NCBI_GenBank
Match: gi|260820445|ref|XP_002605545.1| (retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae] >gi|229290879|gb|EEN61555.1| retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae]) HSP 1 Score: 215.698 bits (548), Expect = 5.408e-64 Identity = 119/295 (40.34%), Postives = 176/295 (59.66%), Query Frame = 0
Query: 49 FAFPLWHVEPSR-----DKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECST-VETMMLDVTDENQVQEAAARV-DAENPEGLYALVNNAGVA--KSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEM-NKVAVKG-LETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGE 332
++ W +E R DK + ITGCDTGFG LA RL Q G RV+A CLT GV E++ CS ++ + +DV+ + VQ+A V +A +GL+ LVNNAG+A G +DW D++ C++VN G++ VTK FLPL+K+ +GR+V VSS AG + PY+ K+ VE F+ LR+ +R +G+KV I PGFHRTE+ N+ V G L+ W + P + +YG + + +D+ K ++ DP+ VV AMEHA+ T PR +Y +G DA+ + P +G+
Sbjct: 2 YSVVTWWLERGRLSQLTDKTVLITGCDTGFGNLLAKRLDQLGLRVFAGCLTEAGVAELRQSCSERLQPIRMDVSSSDSVQDAFRVVKEAVGSKGLWGLVNNAGIAGVSGGTMDWATKEDYQACLKVNLLGMIDVTKTFLPLLKKSRGRVVNVSSAAG-RMAVQDAGPYTVCKYGVEAFSDCLRRAMRYFGVKVHIIEPGFHRTEITNQEMVLGLLDQIWQRQSPETRTEYGVEFLQASKDY-KVSLGRLMQDPVAVVDAMEHALCATHPRSRYVIGWDARLVAIPMSWLPTDLGD 294
BLAST of EWM28695.1 vs. NCBI_GenBank
Match: gi|260809626|ref|XP_002599606.1| (retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae] >gi|229284886|gb|EEN55618.1| retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae]) HSP 1 Score: 215.698 bits (548), Expect = 8.608e-64 Identity = 122/302 (40.40%), Postives = 178/302 (58.94%), Query Frame = 0
Query: 54 WHVEPSR-----DKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECST-VETMMLDVTDENQVQEAAARV-DAENPEGLYALVNNAGVAK--SGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEM--NKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVF------DPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYAL 338
W +E R K + ITGCDTGFG LA RL Q G RV+A CLT GV E++ CS ++ + +DV+ + VQ+A V +A +GL+ LVNNAGV G +W L D++ + VN G++ VTK FLPL+K+ +GR+V V+S AG PL PY+ SK+ VE F+ LR+ +R +G+KV I PG RT+M + + ++ L+ W + P +A+YG+ + + +D D++F DP+ VV AMEHA+ T PR +Y VG DA++ V T P +G+ LI+ L
Sbjct: 22 WWLEKGRLSQLTGKTVLITGCDTGFGNLLARRLDQLGLRVFAGCLTEAGVAELRQSCSERLQPIRMDVSSSDSVQDAFRVVKEAVGSKGLHGLVNNAGVTGVFGGTTEWATLEDYQAVLNVNLLGMIDVTKTFLPLLKKSRGRVVNVASAAG-RMANPLGVPYTVSKYGVEAFSDCLRRAMRCFGVKVHIIEPGLFRTDMTNHDIILRRLDQTWQRQTPETKAEYGEEFLQAAKD-------DIIFGTRFLQDPVAVVDAMEHALCATHPRSRYVVGWDARFITVPTSWLPTDLGD-LIFLL 314
BLAST of EWM28695.1 vs. NCBI_GenBank
Match: gi|12006414|gb|AAG44847.1|AF283540_1 (microsomal retinol dehydrogenase 1 [Branchiostoma floridae]) HSP 1 Score: 213.772 bits (543), Expect = 4.347e-63 Identity = 114/290 (39.31%), Postives = 177/290 (61.03%), Query Frame = 0
Query: 54 WHVEPSR-----DKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECST-VETMMLDVTDENQVQEAAARV-DAENPEGLYALVNNAGV--AKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMN--KVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGE 332
W +E R DK + ITGCDTGFG LA RL Q G RV+A CLT GV E++ CS ++ + +DV+ + VQ+A V +A +GL+ LVNNAG+ G ++W + D++ + VN G++ VTK FLPL+K+ GR+V V+S AG P + PY+ +K+ VE F+ SLR+ +R +G+KV I PG+ RTE+N + A++ L+ W ++ P + +YG+ + + +D + ++ + DP+ VV AMEHA+ T PR +Y +G DA++ V P +G+
Sbjct: 22 WWLERGRLSQLTDKTVLITGCDTGFGNLLAKRLDQLGLRVFAGCLTEAGVAELRQSCSERLQPIRMDVSSSDSVQDAFRVVKEAVGSKGLWGLVNNAGILGVAGGTMEWATMEDYQAVLNVNLLGMIDVTKTFLPLLKKSSGRVVNVASAAG-RVAVPDAGPYTVAKYGVEAFSDSLRRAMRYFGVKVHIIEPGYFRTEINNQENALRRLDDIWQRLSPETRTEYGEEFLQAGKDAI-IASDRFMQDPVAVVDAMEHALCATHPRSRYVIGWDARFIFVPICWLPTDLGD 309
BLAST of EWM28695.1 vs. NCBI_GenBank
Match: gi|1126181038|ref|XP_019622982.1| (PREDICTED: retinol dehydrogenase 16-like isoform X2 [Branchiostoma belcheri]) HSP 1 Score: 212.616 bits (540), Expect = 1.214e-62 Identity = 117/290 (40.34%), Postives = 171/290 (58.97%), Query Frame = 0
Query: 54 WHVEPSR-----DKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECST-VETMMLDVTDENQVQEAAARVD-AENPEGLYALVNNAGV--AKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVA--VKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGE 332
W +E R DK + ITGCDTGFG LA RL Q G RV+A CLT GV E++ CS ++ + +DVT + VQ+A V+ A +GL+ LVNNAG+ G ++W L D++ + VN G++ VTK FLPLIK+ +GRIV V+S G P APY+ SK+ VE F+ LR+ +R +GIKV I PGF RT +N ++ L+ W + P + +YG+ + + +D + +E + DP+ VV AM+HA+ T PR +Y VG D ++ + P +G+
Sbjct: 22 WWLERGRLSQLTDKTVLITGCDTGFGNLLARRLDQLGLRVFAGCLTEAGVAELRQACSERLQPIQMDVTKTDSVQDAFRLVEQAVGSKGLWGLVNNAGILGVMGGTMEWATLEDYQAVLSVNLLGMIDVTKTFLPLIKKSRGRIVNVASGVG-RLAMPQGAPYTVSKYGVEAFSDCLRRAMRCFGIKVHIIEPGFFRTPINNQENLLRRLDQTWQRQSPETKTEYGEEFLQAAKDGI-VASERFMEDPVLVVDAMDHALCATHPRSRYVVGWDVRFMFMPISWLPTDLGD 309
BLAST of EWM28695.1 vs. NCBI_GenBank
Match: gi|1191029012|ref|XP_020917493.1| (17-beta-hydroxysteroid dehydrogenase type 6-like [Exaiptasia pallida]) HSP 1 Score: 211.46 bits (537), Expect = 3.855e-62 Identity = 121/295 (41.02%), Postives = 169/295 (57.29%), Query Frame = 0
Query: 55 HVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECST-VETMMLDVTDENQVQEAAARVDAENP--EGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVA--VKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDP--INVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNK 342
V+ DK + ITGCD GFG+ A+RL Q GF V A CLT +E+K E S + T LDVT +QVQ+ +V A P +GL+ +VNNAGVA GL+DW L F+ +VN +G++ VTK FLPLIK+ KGRIV V+S G +C P + YS SK A E F+ +LR+E+ +G+KVS + PGF +T M A W+K+D Q +YG+ ++ + + D P V+ A+EHAVT TRP +Y +G DA +W P VG+ ++ L +
Sbjct: 36 RVQNPDDKYVLITGCDRGFGKMAAIRLDQLGFHVIATCLTDESQKELKEEASNKLTTFKLDVTKCDQVQDVYHKVTALIPRDKGLWGVVNNAGVATVGLVDWVSLETFKRSADVNLWGMIDVTKTFLPLIKKTKGRIVNVTSXGGRAC-LPNAVAYSVSKFAAEAFSDALRREIADFGVKVSIVEPGFFQTPMVTKANLSNAWRDVWNKLDKEKQEEYGEEFYXIQVENMLVGMVDTCCSPSTYKVIDAIEHAVTSTRPNSRYVIGWDANLLWIWLSRLPASVGDFIVQMLANKR 329
BLAST of EWM28695.1 vs. NCBI_GenBank
Match: gi|999980279|gb|KXJ19453.1| (17-beta-hydroxysteroid dehydrogenase type 6 [Exaiptasia pallida]) HSP 1 Score: 211.075 bits (536), Expect = 7.650e-62 Identity = 121/295 (41.02%), Postives = 169/295 (57.29%), Query Frame = 0
Query: 55 HVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECST-VETMMLDVTDENQVQEAAARVDAENP--EGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVA--VKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDP--INVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNK 342
V+ DK + ITGCD GFG+ A+RL Q GF V A CLT +E+K E S + T LDVT +QVQ+ +V A P +GL+ +VNNAGVA GL+DW L F+ +VN +G++ VTK FLPLIK+ KGRIV V+S G +C P + YS SK A E F+ +LR+E+ +G+KVS + PGF +T M A W+K+D Q +YG+ ++ + + D P V+ A+EHAVT TRP +Y +G DA +W P VG+ ++ L +
Sbjct: 47 RVQNPDDKYVLITGCDRGFGKMAAIRLDQLGFHVIATCLTDESQKELKEEASNKLTTFKLDVTKCDQVQDVYHKVTALIPRDKGLWGVVNNAGVATVGLVDWVSLETFKRSADVNLWGMIDVTKTFLPLIKKTKGRIVNVTSXGGRAC-LPNAVAYSVSKFAAEAFSDALRREIADFGVKVSIVEPGFFQTPMVTKANLSNAWRDVWNKLDKEKQEEYGEEFYXIQVENMLVGMVDTCCSPSTYKVIDAIEHAVTSTRPNSRYVIGWDANLLWIWLSRLPASVGDFIVQMLANKR 340 The following BLAST results are available for this feature:
BLAST of EWM28695.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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