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Properties
| Property Name | Value |
|---|
| Product | retinol retinaldehyde reductase |
| Orig transcript id | gnl|cribi|Naga_100002g152.4785.mrna |
| Orig protein id | gnl|cribi|Naga_100002g152.4785 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:342102..344456 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1872 ID=rna1872|Name=rna1872|organism=Nannochloropsis gaditana|type=mRNA|length=2288bp
TGCACGCACTACCACAGGTCCAATGACAGTTGATCTTTCACGCGGGGGTA
GAAAGACCACGTCGTCGTCTGCAGCCGGTGGTGCCGCTGCCACTGACTCC
CACCGACTCGATCAGGACGGCGTCCCCAATGAGGGCGTGTTGCAAGCGAT
CGAGTACTTGGGACACACTTGCTCCGTTCATGATGTGGTCGCTCGATGTG
GACTACCACAAGACCTGGTAGAGGCTGAGATGGCGGCCTTCCTTCGCGTG
TCAAATGGCTTTTTCGAGGTTCTCGCATCCCCATCTGCCAATGATGACGT
TTTCGAAGTCAAAAACAGTGATGACCAACAGGCAAATGCCCAGCACCTAC
AGCGCAGGGACGTAGAATATGTCGCAAACGTATTTTCCACCGACAATGTC
CGCTACGTCTATCCATCCGGGCTTCGTTCGTTGCTGCGACGGCGCTTTGT
GTTGATGCGCCTCAGGGAGGCTGGTGTGAGGGTTCTACACGTCGCTTTCA
AGGTCGTGCGCATCTCTTTCGGCATCCTGCTGATGCTCTCCCTACTAATT
GTGGTGATTGTCATCGTCGTCGTTGTCGCCCGTAGTGGGGGCGGTGAGCA
CCGTCATGGACAGCTAGACATGCTCCGAGTCATGCACCGACCCCGACGTC
ACTATCTGGGCGGAGGGGGGATGGGTGGCGGGGATTGGCGAGACATGTAC
TACATGTGGTGGTGGTGGAATTACAACCCTTTTTTGTTTGGAAGGGATCC
GCAGATGCAGGCTCAGCGTTGGAGAGAGCAGCAAACGCGGCGACGTCGGG
TCTTGGGGGCGATGGACGAGGAAGGAGGGCGGGCGCGGGAGGCGGGGGAG
GGCGGGGACCCTTCCCCCGGGAGCCGACGACGGACAGCATCTTCTGCCTC
CTTGTACCGTCTTCCTCGCGCGCCACTTGAGGGGACAGAAGGCGGTGGGG
AGGGAGACGGGCAGGACGTGGACGTGGACATGACCTTTGTGGAGTCGGTC
TTCTCTTTGCTCTTTGGCGACGGGCCCCCGGGCCCCAGCCAAAGCCGGCA
GTGGCAAACCCTGGCAAAACTCATCCACGAACGCGGCGGCATCGTCCTCC
CGGAGGAGATCGCACTGTGGTTGAGGGGCGTGGACCCTAATGGGCTGGAT
CGCAGCATGTTCCCTGTCTGCGCGCGGTTTGGGGGGCAGCCGGTCCGGTG
CATCGACGGCGAGACGCGGAGGGACTGCGGCTACATCTACGACTTTGCTG
GCATGCGGGACAAGGGTCGGCACAGCACCCTGCTCTCCTCGACGGCATTG
AGGGAGGATGTCGAGGAGGGTGGCAAAGGCGAGATGGAGGCACGGGCGTT
GCTGGCGCCAGAGGGAGGGGGGAAGGGGGGTCAGGCGGTGGTGGAGATGA
CCCGGGTGGACATGACCACAGATGCTGCGGAGGCGGGCATTCAAGAGACT
CTCAGCGAGGACGAGGACGACGGGTGCTCTCGGTCCACAGGGTCCTCGTC
GTCATCTTGGTGGGATGGCGAAGGCTATTTGGAGGAAGGTCGGTACGTCT
TCTCCCGGGCACCCCTCCATCTGCTCCAGTGCGCCGGTGCACTAGGCTTC
ATCAATTTGGTAGGGGCTGTTTGGGTGAGTAACCAGTGGATTCTCTTCCC
AGAGCCTGGATCCACGGCATTGTATGCAGTCGGGCGGATCTTGCTATGGT
ACGCAGTGTTGTATGTATCCCTTCCGCTAATAAGGCTGGCTACGATTGCC
GTGTGGAATCGAGGAATAAGTCAGCGTAATCAAGTCCGCAAGGCTTTATG
GAAAGCATGGAAGGCAGCCGGGGAAGATTCGTCAAGCTCAGTTTATTTGA
AAATGCAATATGCTCATCGGGTTAGGATGGAACTTGGAATTGGATTGGGT
GGTTTAGGTCGACCAGGACTAGGGAGAAGGGATGAAAGTATCCCAGTGGC
GACACAAATACTTTCTCCCCCCCCCATGCCCTCTCCGTACTCCTCCGCCG
TAGCGTCACCACAGTCTGCGGCTTTGGTTTGATTTCGATAGGTCCGATGA
CCGTCAAGTCAAATTACAAGGCAAAGGCAACAAATCCATGAGACTGAACG
TCGAGTCAACAAGCCCGTCGCGAGGATCTAGACGCGCGTGTTTTATTTTG
CTTTACTCTTCGCTCGTTGGTCAAGGCCTACTCGTTACCACGGCCGTCCC
TAGCAAGTGGACCTAAAAATGCCACGTCCTTTTCCCCCCCTTCCTCATAT
GCAATTGTCTTATGGAGAGGTAGGTGGGTGCCGGAAGT back to topprotein sequence of rna1872 >rna1872-protein ID=rna1872-protein|Name=rna1872|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MGLINWANNVAHIPVFEDMCYYNFFFWAWFWGPLLGALVFLHDATTGFFF
SIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADEL
KKECDALQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLI
DWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGY
PVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGA
LKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAI
TSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGMRVVRGAR
WDQGKAPVGMSTTDTIPEA back to topmRNA from alignment at CM002458.1:342102..344456- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1872 ID=rna1872|Name=rna1872|organism=Nannochloropsis gaditana|type=mRNA|length=2355bp|location=Sequence derived from alignment at CM002458.1:342102..344456- (Nannochloropsis gaditana)
GTTGCAAACGGTAAACGATAATCCGTTGCGCATTCTAAGGAGGCAAAAGC
ACGAATTATGCACCAACGCCTTTCTCTCACCACTCGGGCTCCCTTGTAAA
TTTGAATGGCCTTCCAAATACAATCTTGACGCATAAAGCTTACCACGTGA
ACCATCCCTTTTTTTTGTGCTGAGGCCTTAATAAAGTACCTGAATTTTTC
TCGTTCCTCTCCAGAGCACGTGGGTCGGGGGCTTCGAATACACCCCACAC
GGCTCGCGCGTCCTGAATTCCCAGGGCTCATAAAGGCTTTTACACGTCAC
AACACATAGGGACCACATAAGAATGGGGTTGATCAACTGGGCGAACAATG
TCGCTCACATTCCCGTTTTTGAAGACATGTGCTACTACAATTTTTTCTTC
TGGGCCTGGTTCTGGGGGCCTCTGTTGGGCGCCTTGGTTTTTCTACACGA
CGCCACCACAGGTTTTTTTTTCTCTATCTTTTACGTTGAACCTAGTGAAG
ACAAAGTCGTTGTGATCACGGGCTGTGACACGGGGTTTGGCAAGTCTCTA
GCCTTGGATCTTGGGAAAAAGGGATTCAAAGTATATGCCAGCTGCCTTAC
TCAGAGATCCGCCGACGAGCTGAAGAAGGAGGTGAGAAGTGTGTGATTTC
TATATATGTGCCCTAGATACCTCTCTGAATCCAAGCATCAACGAGGGACC
TGTCCTTTCTCTTATATGTCGAGTTTGCGTCTACTTCTTTCAGCCACAAA
ATCAGCTCAACAATTTACATTTCGGAACCCTTCATACGTCACAAATAGTG
TGACGCCCTTCAGACGATCATTCTGGATGTAACGAAAGAGGATCAAGTGG
CCAGTGTAGCGGCGCGGATAAGTGCTGCACATCCCCAAGGAATCTTCGCT
TTGGTCAACAATGCCGGAGTCTCGCGGGCAGGTCTGATCGATTGGCTCAA
CATGTCCGATTTCCGCTTTTGCATGGAAGTGAACTATTTCTCAGTTGTCT
CGGTCACCAAGGCTTTCCTACCCTCTTTGAAAAAGAGCAAAGGCCGCATC
ATCATGATGTCCTCTGCGGCAGGCGTGGCCTGTGGGTACCCAGTAACCTG
TGCGTACTCTTCCTCGAAACACGCGCTTGAGCTCTTCGCATCGGCACTAC
GGCAAGAACTTCGCACCTGGGGTATCACAGTCTCAACGATTAACCCTGGC
TTCCATCGGACAGAAATCAACCACAACGCCGCCGGTGCATTGAAAGCCAC
TTTTGAGAAAGCACCTCGGGAGATCCAGGAGGAATACGGAGAAGAATATT
TAGGTGCGACTGCAGAGGCCACGACACGCTTCACCGAGACTCAAGCATTG
GATCCGAAAAATGTCATTCGAGCCTACGTCCACGCGATCACCTCGACCCG
ACCCAAGGTCCAGTACCGCGTAGGTATTGACGCCAAGGGCCTCTTCCCTT
TCCTGCAAATCTTCCCCTTGCGGGTGGGGGAGATCTGCGCGTATTATGCA
TCGACAACGAGTGGTATGCGAGTGGTTCGTGGGGCCCGTTGGGACCAGGG
TAAAGCACCTGTAGGCATGTCAACGACTGATACCATCCCGGAGGCGTGAG
GTGACGGCTGTCTTGAAGGCTTTGACGTCCTGTGGTATGGTTAGTGTGTG
TACTGAAACAGATGTTTATAGGGGTGGAGCACAATGCATGGGATTATACA
CGTGCGCGTCATACACAGAATCACATGGAGCTACAGGGATACAGATATTT
TCGTGTGATCTCAGACTTGATAGGCTTGTTGACGATCATAGGGGCTTATA
GGGACTTGTCTCAATAAATAATGCAGTGGACATTCTGATTGTACATGATG
CGGGTAATAGGGATTTTGTAAGGACCATGGGTATATATACGTGATTGCTG
AAGATCATGATATTCGGAGAGAAGAGGTGAAGTCTGTGGGATAATGTGTC
AGTGACCTTATGAAATCTAGGGAAAGAGGAGAAGGGCCTCCGACTTTAAA
TCGTAGGAAAGTACGGGGATTAGAATTTTCAGGAAATGGTATCACTTGCT
TATAAGAGTGCGAGAAAAAAAAGAGACGACAGGGGGGGTTTAAAAAGCTG
ATTTGTAGTCTCCGCAACAAAGCCTACGGAGCAGTTTGTCTTGTGCACTT
ACGAACCATGCTTGCTCCGTTTCCCCCAAAATCCATTTCTTCATACCATT
AATTCAAAAAAGAACTATAAAAATCCGACACCAACTATATCCGCAGTGTC
CTTGTGCCCGGACTGTGGCATGCCACACGTACACGTTGGCCAATTGAGCT
TTTATGTTCCCAAATTGAGGATAATTATCTCTGGCAGTCAACCCGGTCAA
ATTGT back to topCoding sequence (CDS) from alignment at CM002458.1:342102..344456- >rna1872 ID=rna1872|Name=rna1872|organism=Nannochloropsis gaditana|type=CDS|length=2220bp|location=Sequence derived from alignment at CM002458.1:342102..344456- (Nannochloropsis gaditana)
TGTGACGCCCTTCAGACGATCATTCTGGATGTAACGAAAGAGGATCAAGT
GGCCAGTGTAGCGGCGCGGATAAGTGCTGCACATCCCCAAGGAATCTTCG
CTTTGGTCAACAATGCCGGAGTCTCGCGGGCAGGTCTGATCGATTGGCTC
AACATGTCCGATTTCCGCTTTTGCATGGAAGTGAACTATTTCTCAGTTGT
CTCGGTCACCAAGGCTTTCCTACCCTCTTTGAAAAAGAGCAAAGGCCGCA
TCATCATGATGTCCTCTGCGGCAGGCGTGGCCTGTGGGTACCCAGTAACC
TGTGCGTACTCTTCCTCGAAACACGCGCTTGAGCTCTTCGCATCGGCACT
ACGGCAAGAACTTCGCACCTGGGGTATCACAGTCTCAACGATTAACCCTG
GCTTCCATCGGACAGAAATCAACCACAACGCCGCCGGTGCATTGAAAGCC
ACTTTTGAGAAAGCACCTCGGGAGATCCAGGAGGAATACGGAGAAGAATA
TTTAGGTGCGACTGCAGAGGCCACGACACGCTTCACCGAGACTCAAGCAT
TGGATCCGAAAAATGTCATTCGAGCCTACGTCCACGCGATCACCTCGACC
CGACCCAAGGTCCAGTACCGCGTAGGTATTGACGCCAAGGGCCTCTTCCC
TTTCCTGCAAATCTTCCCCTTGCGGGTGGGGGAGATCTGCGCGTATTATG
CATCGACAACGAGTGGTATGCGAGTGGTTCGTGGGGCCCGTTGGGACCAG
GGTAAAGCACCTGTAGGCATGTCAACGACTGATACCATCCCGGAGGCGTG
AATGGGGTTGATCAACTGGGCGAACAATGTCGCTCACATTCCCGTTTTTG
AAGACATGTGCTACTACAATTTTTTCTTCTGGGCCTGGTTCTGGGGGCCT
CTGTTGGGCGCCTTGGTTTTTCTACACGACGCCACCACAGGTTTTTTTTT
CTCTATCTTTTACGTTGAACCTAGTGAAGACAAAGTCGTTGTGATCACGG
GCTGTGACACGGGGTTTGGCAAGTCTCTAGCCTTGGATCTTGGGAAAAAG
GGATTCAAAGTATATGCCAGCTGCCTTACTCAGAGATCCGCCGACGAGCT
GAAGAAGGAGTGTGACGCCCTTCAGACGATCATTCTGGATGTAACGAAAG
AGGATCAAGTGGCCAGTGTAGCGGCGCGGATAAGTGCTGCACATCCCCAA
GGAATCTTCGCTTTGGTCAACAATGCCGGAGTCTCGCGGGCAGGTCTGAT
CGATTGGCTCAACATGTCCGATTTCCGCTTTTGCATGGAAGTGAACTATT
TCTCAGTTGTCTCGGTCACCAAGGCTTTCCTACCCTCTTTGAAAAAGAGC
AAAGGCCGCATCATCATGATGTCCTCTGCGGCAGGCGTGGCCTGTGGGTA
CCCAGTAACCTGTGCGTACTCTTCCTCGAAACACGCGCTTGAGCTCTTCG
CATCGGCACTACGGCAAGAACTTCGCACCTGGGGTATCACAGTCTCAACG
ATTAACCCTGGCTTCCATCGGACAGAAATCAACCACAACGCCGCCGGTGC
ATTGAAAGCCACTTTTGAGAAAGCACCTCGGGAGATCCAGGAGGAATACG
GAGAAGAATATTTAGGTGCGACTGCAGAGGCCACGACACGCTTCACCGAG
ACTCAAGCATTGGATCCGAAAAATGTCATTCGAGCCTACGTCCACGCGAT
CACCTCGACCCGACCCAAGGTCCAGTACCGCGTAGGTATTGACGCCAAGG
GCCTCTTCCCTTTCCTGCAAATCTTCCCCTTGCGGGTGGGGGAGATCTGC
GCGTATTATGCATCGACAACGAGTGGTATGCGAGTGGTTCGTGGGGCCCG
TTGGGACCAGGGTAAAGCACCTGTAGGCATGTCAACGACTGATACCATCC
CGGAGGCGTGAATGGGGTTGATCAACTGGGCGAACAATGTCGCTCACATT
CCCGTTTTTGAAGACATGTGCTACTACAATTTTTTCTTCTGGGCCTGGTT
CTGGGGGCCTCTGTTGGGCGCCTTGGTTTTTCTACACGACGCCACCACAG
GTTTTTTTTTCTCTATCTTTTACGTTGAACCTAGTGAAGACAAAGTCGTT
GTGATCACGGGCTGTGACACGGGGTTTGGCAAGTCTCTAGCCTTGGATCT
TGGGAAAAAGGGATTCAAAGTATATGCCAGCTGCCTTACTCAGAGATCCG
CCGACGAGCTGAAGAAGGAG back to top
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