EWM28666.1, cds1867 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28666.1 vs. NCBI_GenBank
Match: gi|585111089|gb|EWM28666.1| (retinol retinaldehyde reductase [Nannochloropsis gaditana]) HSP 1 Score: 769.229 bits (1985), Expect = 0.000e+0 Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query: 1 MGLINWANNVAHIPVFEDMCYYNFFFWAWFWGPLLGALVFLHDATTGFFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKECDALQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGMRVVRGARWDQGKAPVGMSTTDTIPEA 369
MGLINWANNVAHIPVFEDMCYYNFFFWAWFWGPLLGALVFLHDATTGFFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKECDALQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGMRVVRGARWDQGKAPVGMSTTDTIPEA
Sbjct: 1 MGLINWANNVAHIPVFEDMCYYNFFFWAWFWGPLLGALVFLHDATTGFFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKECDALQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGMRVVRGARWDQGKAPVGMSTTDTIPEA 369
BLAST of EWM28666.1 vs. NCBI_GenBank
Match: gi|585111118|gb|EWM28695.1| (retinol retinaldehyde reductase [Nannochloropsis gaditana]) HSP 1 Score: 394.045 bits (1011), Expect = 4.654e-133 Identity = 193/364 (53.02%), Postives = 257/364 (70.60%), Query Frame = 0
Query: 2 GLINWANNVAHIPVFEDMCYYNFFFWAWFWGPLLGALVFLHDATTGFFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKECDALQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGMRVVRG------ARWDQGKAPVG 359
G + + NN+ HI + E+ +Y++F AW GP + L+ ++D +GF F +++VEPS DK + ITGCDTGFG+SLA+ L +KGF+VYA+CLT +E+K EC ++T++LDVT E+QV AAR+ A +P+G++ALVNNAGV+++GLIDW +SDFRFCMEVN+F VVSVTKAFLP +K+ KGRI+++SS AGV+CGYP++ YS+SKHA+ELFAS+LRQELR WGI VSTINPGFHRTE+N A L+ + K IQ +YG+ Y + TE DP NV+RA HA+T TRP++QYRVG+DAK + QIFPLRVGE Y +T MR + G A Q AP G
Sbjct: 3 GCLEFWNNLCHIDLLEEWIWYSYFTGAWLLGPFMAFLIVVYDFCSGFAFPLWHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECSTVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNKKMRSIVGLPTAPRAEDAQADAPFG 366
BLAST of EWM28666.1 vs. NCBI_GenBank
Match: gi|585106696|gb|EWM25060.1| (serine threonine-protein kinase dclk3 [Nannochloropsis gaditana]) HSP 1 Score: 257.684 bits (657), Expect = 3.654e-73 Identity = 137/343 (39.94%), Postives = 212/343 (61.81%), Query Frame = 0
Query: 1 MGLINWANNVAHIPVFEDMCYYNFFFWAWFWGPL--LGALV-FLHDATTGFFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKEC----DALQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAK-GLFPFLQIFPLRVGEICAY 335
+ ++N N++ H+P+ +D+ ++ + F GPL LG L+ FL +G + +E + + V+ITGCDTGFG LA+ L KKG++VYA CLTQ + ELK + ++ ++++DVTK+ + V +I+ P+ +FA+V NAGV R GL+DW ++ +R MEVN F++++ KA LP LK+SKGRI+ ++S AG+ G P AY++SKHA E F+++LR EL WGI V T+NP FHRT I+ NAA +K ++ + Q EYG EYL A + T+ T+ DP++V+ V A T+ P+ QY VG DA L P + + + +I ++
Sbjct: 1208 IKMLNLMNDIMHLPIVDDIAWHLYHFVRLLLGPLWALGLLISFLVKLLSGAL--VTRLEQPKGRAVLITGCDTGFGYDLAIALVKKGWRVYAGCLTQAAVAELKTKAAGSAGSMVSVLMDVTKQADIDRVVEQIAKESPKQLFAVVCNAGVGRGGLVDWTPLATYRAIMEVNLFAMIATCKACLPLLKESKGRIVNVTSMAGIFLGAPCMSAYAASKHAAEAFSTSLRFELEGWGIRVVTVNPSFHRTRISTNAAETVKQAYDDLDAKTQAEYGLEYLRAVQKLTSDQTDG-CWDPRHVVNTLVRATTAVSPRTQYIVGADATFCLLPLMNLPTPDIEKIVSF 1547
BLAST of EWM28666.1 vs. NCBI_GenBank
Match: gi|1191029012|ref|XP_020917493.1| (17-beta-hydroxysteroid dehydrogenase type 6-like [Exaiptasia pallida]) HSP 1 Score: 214.927 bits (546), Expect = 1.912e-63 Identity = 123/296 (41.55%), Postives = 174/296 (58.78%), Query Frame = 0
Query: 55 VEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKEC-DALQTIILDVTKEDQVASVAARISAAHP--QGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEI--NHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPK--NVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGM 343
V+ +DK V+ITGCD GFGK A+ L + GF V A+CLT S ELK+E + L T LDVTK DQV V +++A P +G++ +VNNAGV+ GL+DW+++ F+ +VN + ++ VTK FLP +KK+KGRI+ ++S G AC P AYS SK A E F+ ALR+E+ +G+ VS + PGF +T + N + A + + K +E QEEYGEE+ E P VI A HA+TSTRP +Y +G DA L+ +L P VG+ + G+
Sbjct: 37 VQNPDDKYVLITGCDRGFGKMAAIRLDQLGFHVIATCLTDESQKELKEEASNKLTTFKLDVTKCDQVQDVYHKVTALIPRDKGLWGVVNNAGVATVGLVDWVSLETFKRSADVNLWGMIDVTKTFLPLIKKTKGRIVNVTSXGGRAC-LPNAVAYSVSKFAAEAFSDALRREIADFGVKVSIVEPGFFQTPMVTKANLSNAWRDVWNKLDKEKQEEYGEEFYXIQVENMLVGMVDTCCSPSTYKVIDAIEHAVTSTRPNSRYVIGWDANLLWIWLSRLPASVGDFIVQMLANKRGV 331
BLAST of EWM28666.1 vs. NCBI_GenBank
Match: gi|999980279|gb|KXJ19453.1| (17-beta-hydroxysteroid dehydrogenase type 6 [Exaiptasia pallida]) HSP 1 Score: 214.542 bits (545), Expect = 3.274e-63 Identity = 123/296 (41.55%), Postives = 174/296 (58.78%), Query Frame = 0
Query: 55 VEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKEC-DALQTIILDVTKEDQVASVAARISAAHP--QGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEI--NHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPK--NVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGM 343
V+ +DK V+ITGCD GFGK A+ L + GF V A+CLT S ELK+E + L T LDVTK DQV V +++A P +G++ +VNNAGV+ GL+DW+++ F+ +VN + ++ VTK FLP +KK+KGRI+ ++S G AC P AYS SK A E F+ ALR+E+ +G+ VS + PGF +T + N + A + + K +E QEEYGEE+ E P VI A HA+TSTRP +Y +G DA L+ +L P VG+ + G+
Sbjct: 48 VQNPDDKYVLITGCDRGFGKMAAIRLDQLGFHVIATCLTDESQKELKEEASNKLTTFKLDVTKCDQVQDVYHKVTALIPRDKGLWGVVNNAGVATVGLVDWVSLETFKRSADVNLWGMIDVTKTFLPLIKKTKGRIVNVTSXGGRAC-LPNAVAYSVSKFAAEAFSDALRREIADFGVKVSIVEPGFFQTPMVTKANLSNAWRDVWNKLDKEKQEEYGEEFYXIQVENMLVGMVDTCCSPSTYKVIDAIEHAVTSTRPNSRYVIGWDANLLWIWLSRLPASVGDFIVQMLANKRGV 342
BLAST of EWM28666.1 vs. NCBI_GenBank
Match: gi|1191048459|ref|XP_020901939.1| (retinol dehydrogenase 2-like [Exaiptasia pallida] >gi|999974145|gb|KXJ13319.1| Retinol dehydrogenase 2 [Exaiptasia pallida]) HSP 1 Score: 193.741 bits (491), Expect = 2.168e-55 Identity = 109/286 (38.11%), Postives = 166/286 (58.04%), Query Frame = 0
Query: 48 FFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKEC-DALQTIILDVTKEDQVA----SVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGA--LKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFP 326
F F V ++K VVITGCDTGFG LA+ L G V+A CLT+ EL+ +C + LQT+ +DVTK + + V + ++A+VNNAG+ GL+DW + + +VN + ++ VTKAFLP LKKSKGRI+ ++S AG AYS SK+ ++ ++ LR+EL +G+ V I+PGF +T + ++AA +K +E E +EEYG++ L + T +Q + P V+ A HA+TS+ PK++Y VG D + L+ +L + P
Sbjct: 23 LFCRDFKVPNLDNKCVVITGCDTGFGHQLAITLDALGLHVFAGCLTEEGEHELQTKCSERLQTVRMDVTKSEDIQRCLECVKGFLETVDNTVLWAVVNNAGIDICGLVDWTSTDTMKKVFDVNLWGLLDVTKAFLPLLKKSKGRIVNVASVAG-KLALAGAGAYSGSKYTVQCYSDVLRRELWHFGVGVHIIDPGFFKTNMTNSAAKCKVIKQLWENLSEEKREEYGQKCLNEALKLTEMLQYSQDMRP--VVDAMEHAVTSSHPKIRYLVGWDHRLLWRWLAMLP 305
BLAST of EWM28666.1 vs. NCBI_GenBank
Match: gi|1126181038|ref|XP_019622982.1| (PREDICTED: retinol dehydrogenase 16-like isoform X2 [Branchiostoma belcheri]) HSP 1 Score: 192.971 bits (489), Expect = 4.382e-55 Identity = 112/283 (39.58%), Postives = 165/283 (58.30%), Query Frame = 0
Query: 60 DKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKEC-DALQTIILDVTKEDQVASVAARI--SAAHPQGIFALVNNAGV--SRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINH--NAAGALKATFEKAPREIQEEYGEEYLGATAE---ATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEI 332
DK V+ITGCDTGFG LA L + G +V+A CLT+ EL++ C + LQ I +DVTK D V A R+ A +G++ LVNNAG+ G ++W + D++ + VN ++ VTK FLP +KKS+GRI+ ++S G P Y+ SK+ +E F+ LR+ +R +GI V I PGF RT IN+ N L T+++ E + EYGEE+L A + A+ RF E DP V+ A HA+ +T P+ +Y VG D + +F + P +G++
Sbjct: 34 DKTVLITGCDTGFGNLLARRLDQLGLRVFAGCLTEAGVAELRQACSERLQPIQMDVTKTDSVQD-AFRLVEQAVGSKGLWGLVNNAGILGVMGGTMEWATLEDYQAVLSVNLLGMIDVTKTFLPLIKKSRGRIVNVASGVG-RLAMPQGAPYTVSKYGVEAFSDCLRRAMRCFGIKVHIIEPGFFRTPINNQENLLRRLDQTWQRQSPETKTEYGEEFLQAAKDGIVASERFME----DPVLVVDAMDHALCATHPRSRYVVGWDVRFMFMPISWLPTDLGDL 310
BLAST of EWM28666.1 vs. NCBI_GenBank
Match: gi|676441948|ref|XP_009049650.1| (hypothetical protein LOTGIDRAFT_141736 [Lottia gigantea] >gi|556111037|gb|ESO99688.1| hypothetical protein LOTGIDRAFT_141736 [Lottia gigantea]) HSP 1 Score: 191.815 bits (486), Expect = 1.033e-54 Identity = 109/274 (39.78%), Postives = 161/274 (58.76%), Query Frame = 0
Query: 59 EDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKECDA-LQTIILDVTKEDQVASVAARISAAHP--QGIFALVNNAGVS-RAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEI--NHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFP 326
+DK V+ITGCD+GFGK+ A+ L GF V A+CLT+ AD L K C L+TI+L+VT ED + + P +G++ALVNNAGVS GL + DF C +VN F ++ VT++FLP L+K +GR++ +SS G P+ YS+ K+ALE F+ LR+E+ + G++V I PGF+ T I + G LK F K+ EIQE YG+++L + + D + VIR A+++ P+ +Y G+DA+ F F+ P
Sbjct: 26 QDKYVLITGCDSGFGKATAIRLHSVGFNVIAACLTKEGADYLTKTCSTKLRTILLNVTSEDDIKKAVKTVKEIIPLNKGLWALVNNAGVSGLVGLFETTTRKDFLDCYKVNLFGLIDVTRSFLPLLRKGQGRVVNLSSITGRFSQIPII--YSTGKYALEGFSDCLRREVYSHGVSVYIIEPGFYNTGILTIERSLGGLKNAFYKSRSEIQEYYGQKFLKKLCDYMSWELNRATSDIEPVIRDIQRAVSAKYPQYRYLSGLDAQFKFRFMWTIP 297
BLAST of EWM28666.1 vs. NCBI_GenBank
Match: gi|1005478814|ref|XP_015776116.1| (PREDICTED: retinol dehydrogenase 3-like isoform X3 [Acropora digitifera] >gi|1005478816|ref|XP_015776118.1| PREDICTED: retinol dehydrogenase 3-like isoform X3 [Acropora digitifera]) HSP 1 Score: 192.2 bits (487), Expect = 2.057e-54 Identity = 108/285 (37.89%), Postives = 164/285 (57.54%), Query Frame = 0
Query: 54 YVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKEC-DALQTIILDVTKEDQVASVAARISAAHP--QGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINH--NAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPK--NVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGE 331
+V +K V++TGCD+GFGK AL+L + GF V+A+CLT+ +EL C + L+TI LDVT ++ + P G++ L+NNAG++R G ++W ++ D++ +VN + ++ VTK FLP +KK GRII ++S AG A P +YS SK +E F+ ALR+EL++ G+ VS I PGF +T I + N G K + K ++EEYG + + + P V+ A VHA+ S PK +Y VG DAK L+ ++ P VG+
Sbjct: 36 FVHGFHEKYVLLTGCDSGFGKVTALELDRLGFNVFATCLTKEGQEELNAVCSERLKTIHLDVTDSQEIRDALGFVMQNLPANTGLWGLINNAGIARIGPVEWQSLEDYKRVADVNLWGLIDVTKVFLPLIKKECGRIINLASIAGRA-SLPHASSYSISKFGVEAFSDALRRELKSRGVKVSVIEPGFFKTNITNKENLQGMWKELWAKLDPNLKEEYGYGFYQTSVSNMLKGMVDTCASPHLCKVVDAIVHALASQNPKSRYVVGWDAKLLWIWISWLPAPVGD 319
BLAST of EWM28666.1 vs. NCBI_GenBank
Match: gi|1126181040|ref|XP_019622983.1| (PREDICTED: retinol dehydrogenase 16-like [Branchiostoma belcheri]) HSP 1 Score: 191.43 bits (485), Expect = 2.087e-54 Identity = 112/281 (39.86%), Postives = 165/281 (58.72%), Query Frame = 0
Query: 60 DKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKEC-DALQTIILDVTKEDQVASVAARI--SAAHPQGIFALVNNAGVSRA--GLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAG-VACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEIN--HNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEI 332
DK V+ITGCDTGFG LA L + G +V+A CLT+ EL+++C + LQ I +DVTK D V A R+ A +G++ LVNNAG+ G ++W + D++ + VN ++ VTK FLP LKKS+GRI+ ++S AG +A Y+ SK+ E F+ +LR+ +R +GI V I PGF RT IN N L T+++ E + EYGE +L AT +A + DP V+ A HA+ +T P+ +Y VG DA+ +F + P +G++
Sbjct: 34 DKTVLITGCDTGFGNLLARRLDQLGLRVFAGCLTEAGVAELRQDCSERLQPIQMDVTKTDSVQD-AFRVVKQAVGSKGLWGLVNNAGILGVITGTMEWATLEDYQAVLNVNLLGMIDVTKTFLPLLKKSRGRIVNVASGAGRIALPNAYGGPYAVSKYGAEAFSDSLRRAMRCFGIKVHIIEPGFFRTPINSQENLLRRLDQTWQRQSLETKTEYGEGFLQATKDAIVAADRSMQ-DPVAVLDALEHALCATHPRSRYVVGWDARYVFMPISWLPTDLGDL 312 The following BLAST results are available for this feature:
BLAST of EWM28666.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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