rna1871, rna1871 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1871
Unique Name	rna1871
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2685
Alignment location	CM002458.1:339584..341871 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100002g154.4891.mrna
Orig protein id	gnl\|cribi\|Naga_100002g154.4891
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:339584..341871 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g154	gene1787	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28772.1	cds1866	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1871	rna1871-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:339584..341871-
coding sequence from alignment at CM002458.1:339584..341871-

mRNA sequence

>rna1871 ID=rna1871|Name=rna1871|organism=Nannochloropsis gaditana|type=mRNA|length=2685bp
ATTGCGTGAAATTTAGTGATCACCCCTCCGTTTCCTTCATGCCCTTCCTT
ACCACAGGACAAATTTTCAACGCCCAATAATTTCACTTTCCATGAGCATC
GAGGATCATCCCCGCCAGCAGCATAACAACCAACAACACCCGCAGCGTCA
GGATCAATTGCACGATGCACAATCGCGTCCGCAGGGGCACCGTAGGGACC
AGCAGGCGCACGCGAAGAAGGTTAGTGGTGTTCCTGGCGGGCATGCGACC
TTGCCGATGAAGAAGAAAAAAGGACCTTCTAGAGTCCACAATCAAAGAGC
GCCGGTCATTCAAGCGGAAGAGCATTCCCTTGGTGCTGATGTATCTGAAA
CCGCAGTCCCAACCCCCTCGGTGGCGGCCGCACTGAAACCGAAGCAAAAA
CGTCAGCCTCCGCAATCGCAGCAACACTCCACGCAGCAATCAGAACCTCA
ACAGCAAGAAGGGGAAAAGAAGAAAGCGCATGCAACGGACAGTGCCTCTG
GGCCACTCTCTTCGGGGGCTCGGGTGGTCGAAAAGGAGGAAAGCCCATTC
GTACTGGTATTGACCAAAAAGACGCGGGCCTTGAAGAAGAAGTTGGACAG
GATTAAGGCACTCGAGGAGGCGCGGGACGACCAGAAAAAAGCTGCGATCC
TGAATGAAGAGCAAATGGCCCTTGTGGCATCCAAAGAGGGCTTGCAGCGA
AGCTTACATGAAACCGAGGGAGTTAAGGCTGCCCTGATGGAGGTGGCCAA
GGAGGAAGAGGTCAAGCTGGCTGCCCGCCACGTGGAAGAGGAGAAGAAAA
TCGCCCTTCGCAAGACTCAGCATCTGCAGCAAGAGCTCAAGCTCCAACAG
CTGCAACAGCAGGAGGCCAAGCTTCAGCTGAAAGTGGTCGAGCAACAGAA
GGAAATTGAGCGGCAAAAGGCAGCTGTTCATGTCGCCAGAGAGGAGGCTG
CCAGGGCCTCTGACGCGGCTGCCGCTGCCACCCCTCCTCTGCATTTGATC
ATGGAGCAAGTGGAGCGCCTCTTCCGAGTCATTCACGTGTATCGGTCCTG
TCTTGAGATGAACACGCCTGCTAACCAGCTCCTGGGCCTCGACGTCTTCG
CCAAAGTCTTGCTGGGGCAAGCCTCTCCTTCTGAGGCGTCCTTCGACGCC
AAACTGGAGCACGCGGTCAAGTGGGCAGGCCACTATTTGATTGCCACGTC
CCTTCCACCGGGCCCAGGCGCGACGGAGGCTGGACTCGTGGTGCAAGAGG
AAGCTAAGCGGCTGGAATTTGCCCCCGGCATGACCGTGGGTGCGATGGAA
GCGCATTTGAAGCACTTGCTGGGCCGCTTTTCCCAGCCGAAACCTGCGTC
CGTGCCAGCGTTCCCCCCTTCCCCTGCATCTGGGCCTCCTGTTCCTGTCC
AGGCGATGGCCGGCCTTTCCATTAAGGAGGAGAATGGCAGCCCTAGGAGA
AAGGAGGCGTCGTGGGAGTTGGTGGAGGCACCGAACCAGGAAGAGGTGCG
GCAGCACCTAGCTTTGCAGGCGATTCTGCAAAAGCGTGAGCAGGATGAGG
CGCTGGGGCCAGATGTCAAGAGGGAGGAGGGAGGCGGGGAGGGTGCGGAT
GGGAATTCCTCCCTGCCGCTAGGAAGGCTGGTCAATCCCACGGGAGACAA
GGGACGCCCGGTAGAGGACGGCTTTCAGAAGCAGAACACACTCACCGGAC
CTGGTAAGCGGACGCAGCCGCGCACATATCACAAGCCTTCCCGATCCCAT
GGTCCTCAATCGCGCAGAGCTATGCGCGGGGAGAATGCCGCCACAGTCAA
CGGTGGCACTGACACACTGGTAGATGCTGTCGCTGTCGCGGCCTCTGCGG
AAAGCTCCATGGCAGGCGTGCAGACTCCGACAGCTGTGGGGCCTGTCGCT
ACGCGCAAGACGGACGCTGGGAGCCAGGTCTCGAAACAAAATGCCATTAA
GAAGGAGGCAAAGGCTACAGGAAACGTAGAGGCCTACCCTGCTGGTTACG
GAGGAAACGGGCCTCGGCGGGGTCCCCGAAGGACGGGAGGTCAAGGAGGA
GGTCGGGGACAGGGCGGGATGAAGAAAGATGGGGGCGGAAATAAAAGAGA
AGGCATTCCCTCGACACCGTACGTTCCGCACGCCCCACAGACCACCGCTG
GCTCGGGGAATCTCGGGCATTAGGGGGGGGAAAGACCGATACGGTTGCCG
GCCTGGATAGGATGTCGTACGATAATGTGCAAAATCGAAGCGCGACAAGG
CGATGGCAGATAAAATGCTGGGGATCACACCGGACGGGATCGCAGGTGTG
GCGGTGAGGCAACGACGGGGGTTGAAAACCGGCGAAAAGAAAGCAACATG
CAAAGTTACATCATGCACAAGTAGTAAAGGAGCAAGATGAGAGGAAGATC
GAACCCCATAGTGTTTTTCTTGAGACGGAGGATGCTGCGGAAGAACTCAT
CAGCAGGGTCGGCTCTGTGATTGCAGAGACCCTGGAGAAGAATTCGCGTC
CACTTGTCACTTCCGGCACCCACCTACCTCTCCATAAGACAATTGCATAT
GAGGAAGGGGGGGAAAAGGACGTGGCATTTTTAGGTCCACTTGCTAGGGA
CGGCCGTGGTAACGAGTAGGCCTTGACCAACGAGCGAAGAGTAAAGCAAA
ATAAAACACGCGCGTCTAGATCCTCGCGACGGGCT

protein sequence of rna1871

>rna1871-protein ID=rna1871-protein|Name=rna1871|organism=Nannochloropsis gaditana|type=polypeptide|length=669bp
MTVDLSRGGRKTTSSSAAGGAAATDSHRLDQDGVPNEGVLQAIEYLGHTC
SVHDVVARCGLPQDLVEAEMAAFLRVSNGFFEVLASPSANDDVFEVKNSD
DQQANAQHLQRRDVEYVANVFSTDNVRYVYPSGLRSLLRRRFVLMRLREA
GVRVLHVAFKVVRISFGILLMLSLLIVVIVIVVVVARSGGGEHRHGQLDM
LRVMHRPRRHYLGGGGMGGGDWRDMYYMWWWWNYNPFLFGRDPQMQAQRW
REQQTRRRRVLGAMDEEGGRAREAGEGGDPSPGSRRRTASSASLYRLPRA
PLEGTEGGGEGDGQDVDVDMTFVESVFSLLFGDGPPGPSQSRQWQTLAKL
IHERGGIVLPEEIALWLRGVDPNGLDRSMFPVCARFGGQPVRCIDGETRR
DCGYIYDFAGMRDKGRHSTLLSSTALREDVEEGGKGEMEARALLAPEGGG
KGGQAVVEMTRVDMTTDAAEAGIQETLSEDEDDGCSRSTGSSSSSWWDGE
GYLEEGRYVFSRAPLHLLQCAGALGFINLVGAVWVSNQWILFPEPGSTAL
YAVGRILLWYAVLYVSLPLIRLATIAVWNRGISQRNQVRKALWKAWKAAG
EDSSSSVYLKMQYAHRVRMELGIGLGGLGRPGLGRRDESIPVATQILSPP
PMPSPYSSAVASPQSAALV

mRNA from alignment at CM002458.1:339584..341871-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1871 ID=rna1871|Name=rna1871|organism=Nannochloropsis gaditana|type=mRNA|length=2288bp|location=Sequence derived from alignment at CM002458.1:339584..341871- (Nannochloropsis gaditana)
TGCACGCACTACCACAGGTCCAATGACAGTTGATCTTTCACGCGGGGGTA
GAAAGACCACGTCGTCGTCTGCAGCCGGTGGTGCCGCTGCCACTGACTCC
CACCGACTCGATCAGGACGGCGTCCCCAATGAGGGCGTGTTGCAAGCGAT
CGAGTACTTGGGACACACTTGCTCCGTTCATGATGTGGTCGCTCGATGTG
GACTACCACAAGACCTGGTAGAGGCTGAGATGGCGGCCTTCCTTCGCGTG
TCAAATGGCTTTTTCGAGGTTCTCGCATCCCCATCTGCCAATGATGACGT
TTTCGAAGTCAAAAACAGTGATGACCAACAGGCAAATGCCCAGCACCTAC
AGCGCAGGGACGTAGAATATGTCGCAAACGTATTTTCCACCGACAATGTC
CGCTACGTCTATCCATCCGGGCTTCGTTCGTTGCTGCGACGGCGCTTTGT
GTTGATGCGCCTCAGGGAGGCTGGTGTGAGGGTTCTACACGTCGCTTTCA
AGGTCGTGCGCATCTCTTTCGGCATCCTGCTGATGCTCTCCCTACTAATT
GTGGTGATTGTCATCGTCGTCGTTGTCGCCCGTAGTGGGGGCGGTGAGCA
CCGTCATGGACAGCTAGACATGCTCCGAGTCATGCACCGACCCCGACGTC
ACTATCTGGGCGGAGGGGGGATGGGTGGCGGGGATTGGCGAGACATGTAC
TACATGTGGTGGTGGTGGAATTACAACCCTTTTTTGTTTGGAAGGGATCC
GCAGATGCAGGCTCAGCGTTGGAGAGAGCAGCAAACGCGGCGACGTCGGG
TCTTGGGGGCGATGGACGAGGAAGGAGGGCGGGCGCGGGAGGCGGGGGAG
GGCGGGGACCCTTCCCCCGGGAGCCGACGACGGACAGCATCTTCTGCCTC
CTTGTACCGTCTTCCTCGCGCGCCACTTGAGGGGACAGAAGGCGGTGGGG
AGGGAGACGGGCAGGACGTGGACGTGGACATGACCTTTGTGGAGTCGGTC
TTCTCTTTGCTCTTTGGCGACGGGCCCCCGGGCCCCAGCCAAAGCCGGCA
GTGGCAAACCCTGGCAAAACTCATCCACGAACGCGGCGGCATCGTCCTCC
CGGAGGAGATCGCACTGTGGTTGAGGGGCGTGGACCCTAATGGGCTGGAT
CGCAGCATGTTCCCTGTCTGCGCGCGGTTTGGGGGGCAGCCGGTCCGGTG
CATCGACGGCGAGACGCGGAGGGACTGCGGCTACATCTACGACTTTGCTG
GCATGCGGGACAAGGGTCGGCACAGCACCCTGCTCTCCTCGACGGCATTG
AGGGAGGATGTCGAGGAGGGTGGCAAAGGCGAGATGGAGGCACGGGCGTT
GCTGGCGCCAGAGGGAGGGGGGAAGGGGGGTCAGGCGGTGGTGGAGATGA
CCCGGGTGGACATGACCACAGATGCTGCGGAGGCGGGCATTCAAGAGACT
CTCAGCGAGGACGAGGACGACGGGTGCTCTCGGTCCACAGGGTCCTCGTC
GTCATCTTGGTGGGATGGCGAAGGCTATTTGGAGGAAGGTCGGTACGTCT
TCTCCCGGGCACCCCTCCATCTGCTCCAGTGCGCCGGTGCACTAGGCTTC
ATCAATTTGGTAGGGGCTGTTTGGGTGAGTAACCAGTGGATTCTCTTCCC
AGAGCCTGGATCCACGGCATTGTATGCAGTCGGGCGGATCTTGCTATGGT
ACGCAGTGTTGTATGTATCCCTTCCGCTAATAAGGCTGGCTACGATTGCC
GTGTGGAATCGAGGAATAAGTCAGCGTAATCAAGTCCGCAAGGCTTTATG
GAAAGCATGGAAGGCAGCCGGGGAAGATTCGTCAAGCTCAGTTTATTTGA
AAATGCAATATGCTCATCGGGTTAGGATGGAACTTGGAATTGGATTGGGT
GGTTTAGGTCGACCAGGACTAGGGAGAAGGGATGAAAGTATCCCAGTGGC
GACACAAATACTTTCTCCCCCCCCCATGCCCTCTCCGTACTCCTCCGCCG
TAGCGTCACCACAGTCTGCGGCTTTGGTTTGATTTCGATAGGTCCGATGA
CCGTCAAGTCAAATTACAAGGCAAAGGCAACAAATCCATGAGACTGAACG
TCGAGTCAACAAGCCCGTCGCGAGGATCTAGACGCGCGTGTTTTATTTTG
CTTTACTCTTCGCTCGTTGGTCAAGGCCTACTCGTTACCACGGCCGTCCC
TAGCAAGTGGACCTAAAAATGCCACGTCCTTTTCCCCCCCTTCCTCATAT
GCAATTGTCTTATGGAGAGGTAGGTGGGTGCCGGAAGT

Coding sequence (CDS) from alignment at CM002458.1:339584..341871-

>rna1871 ID=rna1871|Name=rna1871|organism=Nannochloropsis gaditana|type=CDS|length=2010bp|location=Sequence derived from alignment at CM002458.1:339584..341871- (Nannochloropsis gaditana)
ATGACAGTTGATCTTTCACGCGGGGGTAGAAAGACCACGTCGTCGTCTGC
AGCCGGTGGTGCCGCTGCCACTGACTCCCACCGACTCGATCAGGACGGCG
TCCCCAATGAGGGCGTGTTGCAAGCGATCGAGTACTTGGGACACACTTGC
TCCGTTCATGATGTGGTCGCTCGATGTGGACTACCACAAGACCTGGTAGA
GGCTGAGATGGCGGCCTTCCTTCGCGTGTCAAATGGCTTTTTCGAGGTTC
TCGCATCCCCATCTGCCAATGATGACGTTTTCGAAGTCAAAAACAGTGAT
GACCAACAGGCAAATGCCCAGCACCTACAGCGCAGGGACGTAGAATATGT
CGCAAACGTATTTTCCACCGACAATGTCCGCTACGTCTATCCATCCGGGC
TTCGTTCGTTGCTGCGACGGCGCTTTGTGTTGATGCGCCTCAGGGAGGCT
GGTGTGAGGGTTCTACACGTCGCTTTCAAGGTCGTGCGCATCTCTTTCGG
CATCCTGCTGATGCTCTCCCTACTAATTGTGGTGATTGTCATCGTCGTCG
TTGTCGCCCGTAGTGGGGGCGGTGAGCACCGTCATGGACAGCTAGACATG
CTCCGAGTCATGCACCGACCCCGACGTCACTATCTGGGCGGAGGGGGGAT
GGGTGGCGGGGATTGGCGAGACATGTACTACATGTGGTGGTGGTGGAATT
ACAACCCTTTTTTGTTTGGAAGGGATCCGCAGATGCAGGCTCAGCGTTGG
AGAGAGCAGCAAACGCGGCGACGTCGGGTCTTGGGGGCGATGGACGAGGA
AGGAGGGCGGGCGCGGGAGGCGGGGGAGGGCGGGGACCCTTCCCCCGGGA
GCCGACGACGGACAGCATCTTCTGCCTCCTTGTACCGTCTTCCTCGCGCG
CCACTTGAGGGGACAGAAGGCGGTGGGGAGGGAGACGGGCAGGACGTGGA
CGTGGACATGACCTTTGTGGAGTCGGTCTTCTCTTTGCTCTTTGGCGACG
GGCCCCCGGGCCCCAGCCAAAGCCGGCAGTGGCAAACCCTGGCAAAACTC
ATCCACGAACGCGGCGGCATCGTCCTCCCGGAGGAGATCGCACTGTGGTT
GAGGGGCGTGGACCCTAATGGGCTGGATCGCAGCATGTTCCCTGTCTGCG
CGCGGTTTGGGGGGCAGCCGGTCCGGTGCATCGACGGCGAGACGCGGAGG
GACTGCGGCTACATCTACGACTTTGCTGGCATGCGGGACAAGGGTCGGCA
CAGCACCCTGCTCTCCTCGACGGCATTGAGGGAGGATGTCGAGGAGGGTG
GCAAAGGCGAGATGGAGGCACGGGCGTTGCTGGCGCCAGAGGGAGGGGGG
AAGGGGGGTCAGGCGGTGGTGGAGATGACCCGGGTGGACATGACCACAGA
TGCTGCGGAGGCGGGCATTCAAGAGACTCTCAGCGAGGACGAGGACGACG
GGTGCTCTCGGTCCACAGGGTCCTCGTCGTCATCTTGGTGGGATGGCGAA
GGCTATTTGGAGGAAGGTCGGTACGTCTTCTCCCGGGCACCCCTCCATCT
GCTCCAGTGCGCCGGTGCACTAGGCTTCATCAATTTGGTAGGGGCTGTTT
GGGTGAGTAACCAGTGGATTCTCTTCCCAGAGCCTGGATCCACGGCATTG
TATGCAGTCGGGCGGATCTTGCTATGGTACGCAGTGTTGTATGTATCCCT
TCCGCTAATAAGGCTGGCTACGATTGCCGTGTGGAATCGAGGAATAAGTC
AGCGTAATCAAGTCCGCAAGGCTTTATGGAAAGCATGGAAGGCAGCCGGG
GAAGATTCGTCAAGCTCAGTTTATTTGAAAATGCAATATGCTCATCGGGT
TAGGATGGAACTTGGAATTGGATTGGGTGGTTTAGGTCGACCAGGACTAG
GGAGAAGGGATGAAAGTATCCCAGTGGCGACACAAATACTTTCTCCCCCC
CCCATGCCCTCTCCGTACTCCTCCGCCGTAGCGTCACCACAGTCTGCGGC
TTTGGTTTGA

Synonyms

Publications