rna1869, rna1869 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1869
Unique Name	rna1869
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1290
Alignment location	CM002458.1:334669..336805 -

Link to JBrowse

Properties


Property Name	Value
Product	nuclear autoantigenic sperm protein
Orig transcript id	gnl\|cribi\|Naga_100002g156.4783.mrna
Orig protein id	gnl\|cribi\|Naga_100002g156.4783
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:334669..336805 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g156	gene1785	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28664.1	cds1864	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1869	rna1869-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:334669..336805-
coding sequence from alignment at CM002458.1:334669..336805-

mRNA sequence

>rna1869 ID=rna1869|Name=rna1869|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp
ATGACGCCAAATGCTGAGCTAAAACAGCGCCAACTACCAGAGTCGCAGAA
GACGACGAAGTCTAAGCTGCTGGACCCCGCACGCAAAGGCGCGACGACCG
TCAGCTCGGTGAAGCGATCCGCCAGTCCCACCGGTATCTCTCACCTTAGT
CAAGAAGCAGGCAAGGTCAAGACTATTCGAGATGCCATCCGTGCCGAGGA
TAAACGCCTCCGTGCAGCTTACCCCTTCCCCTTGGGCGAGCACTGGCAGA
GCGTTGTGGGCCTAGCCATTTACGTGGGGTCGTGGGTAGTCTGGGGGATA
GCCACGTACGCGTGGTGGACGGGAGGGTTGAGCCTACCTGTGTTGATGGT
CGTGAATGCCTTGGCTATCTCCCTCTTGCATGAGATGGAACACGACCTGA
TCCACGAGCTGTATTTCAAGCGGCAACCGTGGGTACAGCACGTGATGTTC
ATGGGCATCTGGCTGATCAAGTCGAACGCGTCTCCGTGGTGGCGCAAGTA
CTACCACCTCCGGCACCACCAGTACAGCGGGCAGGTCAATGATGTGGAGG
AGCGCCTGATCGGCTTGGGCCTTCGGTGGTGGTCGCCCAAACGCCTGCTC
GTCACACTGACCCCCGCGGGGACCCTGCTGGTGGCGAACGACATTGCCCG
GGACGATCCTGAGTTCTCTCGGGTCAACCTGGTCCTCAGCAACTCCCCCG
TGATCGTCCTCTCGACCGCCGCGATGCTCGTGCACCTGATCTGCGCCTCG
GGCGGGGACGCGGCCCTGGTCAAGGCAGGCGTGCTCTCCGTGCCTCTGCA
CGCTTTTCTCTCTCAGCGGATCCTGCCTGCCCTCTTTTTGTACAACGCGG
CCGTCAACTTTCCCAACGTCCTCCGCCAGTCTTGCCTGGTCATCATCAGC
ACCTACTGCCACTACTACGGAGACATCCCGGAGCGCGACGTTTTCTTCCA
AACTCAAATCTTGGACCATCCCTTACTCTGGCCGTTTCAACTTTTCTGCT
TCAACTTTGGAGCTACCCACATCATTCACCATTTTGTCACCCGGCAACCC
TTCTACTTGAGGCAAGTGACCGCCTTCCGTGTCCTGCCCATCATGAAGGC
ACTGGGGTGTCGGCACAACGATATGGGTAACAACTTCAGGGGGAATCGGT
GGGTGGGGGGCGAGAAAGCAGTGGACGGGAAGGGGGAGATGATGGCCGGG
CCACGGGAGGAGGGGGAGGACTGGACTGCGACGACCCCAAGGACCAGTGA
CGATGAAGACAGCGGGGAGGAACACATCAAGGGGGCCTAA

protein sequence of rna1869

>rna1869-protein ID=rna1869-protein|Name=rna1869|organism=Nannochloropsis gaditana|type=polypeptide|length=523bp
MASSSTTAHAASSAVGDKKDTPQERLAAMLEDPRYKQGVALCKRGQFDEA
LEFLGSCVALAASEDDVSLAAAPVYFAYGDALLSKAEESVDLFGAAMTAA
KEKVGEEEEGEEEAEEECEGHGSTSDAAAASSSNEANSSNNGVAMAGGES
CTKAPATASSKAIGETAYEEGDTGGEITKVGIPEDVQDDLEVAWENLEAS
RVIYHKHEDMVDPMKLGEVYLRLGDLQKANGNFTQAVDDYLRSLEIYAKV
CDEDSRVIADLHYQLAMMYIYASVEEEHAVTFKSKALEHYIQCARVFEIL
VEKARKAAATAGKVGDGEEDGSSFPKEGRKEGEDAVKSPPPPPKSTPAED
LKEFEEILAELRETIEATRQELSAAGSVAKAPGPVTTIGFGQPLASSLGP
PAAHGEAEGISRNGSGGGAAHLKGQSEKMGPRTLDGGQASVATTAAVNVM
AVKKKTKSLIPTASSSPREPSAGLSAAAAGKMEAKKDDLEPQSEEKMSPK
KRLVTEQTEGPAELPISKEARFE

mRNA from alignment at CM002458.1:334669..336805-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1869 ID=rna1869|Name=rna1869|organism=Nannochloropsis gaditana|type=mRNA|length=2137bp|location=Sequence derived from alignment at CM002458.1:334669..336805- (Nannochloropsis gaditana)
CGCGGGAAATGTACACGTCGTTTCCGAGTTGATCGTGTGCTTTGCCGGGT
CGTGTCGCGTTTTTACCTCCTCCCCGCTACAACCCGCTCTTATGTGGTTT
CTTTTTCCCTCCTTTTTCTATAGGAACAAATGGCTTCCTCTTCCACCACC
GCCCACGCAGCTTCGTCTGCTGTCGGTGACAAAAAGGATACTCCACAAGA
AAGATTGGCGGCCATGCTGGAAGACCCTCGGTATAAACAAGGAGTGGCTT
TGTGCAAACGAGGACAGTTTGACGAAGCGCTTGAGTTCCTAGGCTCCTGC
GTTGCCCTTGCTGCCAGCGAGGATGATGTGTCTCTCGCCGCGGCTCCTGT
GTATTTTGCATATGGCGATGCCCTCCTTAGTAAGGCGGAAGAGTCCGTTG
ACTTGTTTGGAGCTGCCATGACTGCCGCGAAGGAGAAGGTGGGAGAGGAG
GAGGAAGGCGAGGAAGAGGCGGAGGAGGAATGTGAAGGTCATGGGTCAAC
CTCGGATGCGGCGGCCGCATCGTCAAGTAATGAGGCTAACAGCAGTAACA
ATGGTGTGGCAATGGCAGGGGGTGAATCCTGTACAAAGGCACCTGCCACG
GCGTCTAGCAAGGCCATCGGGGAGACTGCTTACGAGGAAGGGGACACGGG
GGGGGAAATCACGAAAGTAGGCATCCCTGAAGACGTACAAGACGATTTGG
AGGTGGCTTGGGAGAACCTGGAGGCGTCCCGTGTGATCTACCACAAGCAC
GAGGACATGGTGGACCCCATGAAGCTGGGAGAGGTCTACTTGCGCTTGGG
TGACTTGCAAAAAGCCAACGGCAACTTTACACAGGCCGTGGACGATTACC
TTCGGAGTCTGGAGATTTATGCAAAGGTCTGTGACGAAGATAGCCGTGTG
ATTGCCGATCTGCACTACCAGCTGGCCATGATGTACATATACGCGTCCGT
GGAAGAGGAGCACGCCGTGACTTTCAAGTCCAAGGCGCTGGAGCACTATA
TTCAATGCGCACGCGTATTCGAAATCCTAGTGGAGAAGGCCCGAAAGGCA
GCCGCCACGGCGGGAAAAGTCGGGGATGGAGAAGAGGATGGGTCGAGCTT
TCCGAAGGAGGGGCGAAAAGAGGGCGAGGACGCAGTCAAGTCTCCGCCTC
CGCCGCCCAAGTCCACGCCGGCAGAGGACTTGAAGGAATTCGAAGAGATT
CTAGCGGAGCTGCGGGAGACGATCGAAGCGACGAGGCAAGAGCTGTCGGC
GGCGGGCTCTGTTGCCAAGGCGCCGGGCCCGGTGACCACGATTGGTTTCG
GGCAACCACTTGCCTCCTCGCTAGGGCCACCTGCGGCTCATGGGGAAGCA
GAAGGAATTAGCAGGAATGGGAGTGGCGGCGGAGCCGCACACTTGAAGGG
TCAGAGTGAAAAGATGGGACCGCGCACCTTGGACGGAGGCCAGGCTTCGG
TTGCTACCACCGCGGCTGTTAATGTTATGGCGGTGAAGAAAAAGACCAAG
TCTCTGATCCCCACCGCCTCTTCTTCTCCCCGTGAACCATCTGCTGGTCT
CTCAGCAGCGGCCGCTGGGAAGATGGAGGCAAAGAAAGATGATCTAGAGC
CCCAGAGCGAGGAAAAGATGAGTCCGAAGAAAAGATTGGTCACCGAGCAA
ACTGAGGGACCTGCTGAATTGCCCATTTCCAAGGAAGCCCGGTTTGAGTG
AAAATGGGAGGGAGAAGTTGGGTCAAATCCTCATTGATATGAGATGGGAA
GAAGAGGTCGGACAAGAAAAACAAACGGAAACTGACGTAAATATGCTTCA
ATGGTGGAGATAAAGGGATGACAACTTAGTAAAATGATTGGTTGCATGGT
TGTGCTGCAGAATATCGTTACGCTGCGTTTCTGTCAGACCTTGCGCTGGC
ACTGTGTCAGTTGCTGTACTAATTCGAAATTTTGGGAAGGACAGCTATTA
TTCCACCATTATTGAAGAATAAAATATTAAAACAGAGAATAAAAGGACCT
GAACATCTTACTCAACAACATGCCATGGTGGAAGTGATCACAAATTTCGG
TCGACCGGCCGCTTAGCGTCAAAAAGTTTGCGTGCTCTCCCGTGTGCAGC
GAGAAAATCTCATGGAGAACGTTGAATTGGGTTATGG

Coding sequence (CDS) from alignment at CM002458.1:334669..336805-

>rna1869 ID=rna1869|Name=rna1869|organism=Nannochloropsis gaditana|type=CDS|length=1572bp|location=Sequence derived from alignment at CM002458.1:334669..336805- (Nannochloropsis gaditana)
ATGGCTTCCTCTTCCACCACCGCCCACGCAGCTTCGTCTGCTGTCGGTGA
CAAAAAGGATACTCCACAAGAAAGATTGGCGGCCATGCTGGAAGACCCTC
GGTATAAACAAGGAGTGGCTTTGTGCAAACGAGGACAGTTTGACGAAGCG
CTTGAGTTCCTAGGCTCCTGCGTTGCCCTTGCTGCCAGCGAGGATGATGT
GTCTCTCGCCGCGGCTCCTGTGTATTTTGCATATGGCGATGCCCTCCTTA
GTAAGGCGGAAGAGTCCGTTGACTTGTTTGGAGCTGCCATGACTGCCGCG
AAGGAGAAGGTGGGAGAGGAGGAGGAAGGCGAGGAAGAGGCGGAGGAGGA
ATGTGAAGGTCATGGGTCAACCTCGGATGCGGCGGCCGCATCGTCAAGTA
ATGAGGCTAACAGCAGTAACAATGGTGTGGCAATGGCAGGGGGTGAATCC
TGTACAAAGGCACCTGCCACGGCGTCTAGCAAGGCCATCGGGGAGACTGC
TTACGAGGAAGGGGACACGGGGGGGGAAATCACGAAAGTAGGCATCCCTG
AAGACGTACAAGACGATTTGGAGGTGGCTTGGGAGAACCTGGAGGCGTCC
CGTGTGATCTACCACAAGCACGAGGACATGGTGGACCCCATGAAGCTGGG
AGAGGTCTACTTGCGCTTGGGTGACTTGCAAAAAGCCAACGGCAACTTTA
CACAGGCCGTGGACGATTACCTTCGGAGTCTGGAGATTTATGCAAAGGTC
TGTGACGAAGATAGCCGTGTGATTGCCGATCTGCACTACCAGCTGGCCAT
GATGTACATATACGCGTCCGTGGAAGAGGAGCACGCCGTGACTTTCAAGT
CCAAGGCGCTGGAGCACTATATTCAATGCGCACGCGTATTCGAAATCCTA
GTGGAGAAGGCCCGAAAGGCAGCCGCCACGGCGGGAAAAGTCGGGGATGG
AGAAGAGGATGGGTCGAGCTTTCCGAAGGAGGGGCGAAAAGAGGGCGAGG
ACGCAGTCAAGTCTCCGCCTCCGCCGCCCAAGTCCACGCCGGCAGAGGAC
TTGAAGGAATTCGAAGAGATTCTAGCGGAGCTGCGGGAGACGATCGAAGC
GACGAGGCAAGAGCTGTCGGCGGCGGGCTCTGTTGCCAAGGCGCCGGGCC
CGGTGACCACGATTGGTTTCGGGCAACCACTTGCCTCCTCGCTAGGGCCA
CCTGCGGCTCATGGGGAAGCAGAAGGAATTAGCAGGAATGGGAGTGGCGG
CGGAGCCGCACACTTGAAGGGTCAGAGTGAAAAGATGGGACCGCGCACCT
TGGACGGAGGCCAGGCTTCGGTTGCTACCACCGCGGCTGTTAATGTTATG
GCGGTGAAGAAAAAGACCAAGTCTCTGATCCCCACCGCCTCTTCTTCTCC
CCGTGAACCATCTGCTGGTCTCTCAGCAGCGGCCGCTGGGAAGATGGAGG
CAAAGAAAGATGATCTAGAGCCCCAGAGCGAGGAAAAGATGAGTCCGAAG
AAAAGATTGGTCACCGAGCAAACTGAGGGACCTGCTGAATTGCCCATTTC
CAAGGAAGCCCGGTTTGAGTGA

Synonyms

Publications