rna1867, rna1867 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1867
Unique Name	rna1867
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2325
Alignment location	CM002458.1:329505..331095 -

Link to JBrowse

Properties


Property Name	Value
Product	riboflavin biosynthesis protein
Orig transcript id	gnl\|cribi\|Naga_100002g158.4926.mrna
Orig protein id	gnl\|cribi\|Naga_100002g158.4926
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:329505..331095 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g158	gene1783	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1867	rna1867-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28807.1	cds1862	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:329505..331095-
coding sequence from alignment at CM002458.1:329505..331095-

mRNA sequence

>rna1867 ID=rna1867|Name=rna1867|organism=Nannochloropsis gaditana|type=mRNA|length=2325bp
ATGACAAGTGGCAGCGATACCTTGGATTCAGAGGCTTTTAAAAAAATCAA
GGCTGGATCAACCCTCCCTACCCCTTCTATGACACAAACTGGGCCACGAG
TGACCGGGATGGAGACTCCAATCAAGGCACCATCGAGGTCGTCTCCATGG
ACTCGCGATGACTTCGACTTCGGTTCTCCACCCCAACCCATCGGCCAGGG
ACGGTTTGGTCATGTTTTTGCTGCTAAAGAAAAGCGCAGCAACAAAGTAG
TCGGCATTAAGGTCCTCTTCAAAAAAGAGCTGGAAGCCTGTGGTGTGGTG
AAACAACTGCGGCAGGAAATCGAGGTGCATTGTAAATTGCGCCACCCCAA
CATAATACGCATGTTTGGATGGTTTCAGGACCCGCATCGCGTGTATGTTG
TAATGTCACTGGCAGAAGGGGGCGATCTACTGAAGTACTTGCGTGCACAG
CCGCAGCGACGGCTTGCTGAGCCCCAGGCAGCATTTTACATGCGACAGCT
GTTGGATGCGCTTACCTATTTGCACGGACAAGGAATCATACATCGGGATT
TAAAACCTGAAAACCTGCTTTTGAATCGACGGGGCCACCTTTTGCTGTGT
GACTTCGGTTGGTGCACATCCAGCAAGCGGTTGCGGCAAACAGTGTGTGG
GACCCAGGGCGATTACTTAGCGCCGGAGGTCCTGGCTCGGGAGCCTTATG
GGCCCAGTGTGGATCTGTGGACAGCTGGTGTCATGGCCTTTGAACTACTG
CATGGGCGTACCCCATTTGAGCGGCGACGATCGGATGAGAAAATTGGCGG
TGGTCAAAGCACGGCAAGGGATGCTACGGACCAGCTCGCCCACGGTGCAG
GCGAGGAAGACGAGGAAAGCAGCGACGAGGAGCTCCTGTCTGAGCGCGGA
CAGCGGATTCATTTCCGGGAAGATTTGACGGACGAGGCATGCAACTTCAT
CATGCGAGTCTTGCAGTCAGAACCATCTTTGCGGCCGTCCCTGGAGGAGG
CTTTGGCCGACCCCTGGTTAGACGAATCCAATGTCGCGCCTCCTGTCGCC
TTTTCTTCCTTCTTAGTGAGCAGGAAAAGACCAGGATGCGGCGTCACTGC
CAAATCGAACACAGATTTTTCCAAGCTTCCATCTTGTATCCAGAGCCATC
CCCCTTCTCTCCCCGGCGACCCTCTCTATCCTGCTCCCCCGCTGAGCTCT
ACAGACAGCACACCCCTTGTAATTCAGCCAATCTTGTGCTCCGACAAGAG
CGGTAAAGGCTGGTCGCGGCATGACTTTGCATTCAATCCCAATCCCATCG
GTCGAGGCCGTTACGGCTCCGTGTACATGGCAAGAGAGAAAAAGACCGGG
CGGAGGGTGGCAGTCAAAGTTCTCCATAAAGCTCAGCTTGAGGCAGACGG
CGTCTGGCATCAAATCAAAAATGAGGTCGAAATTCATTGCAAACTTCGAC
ACCGACACATTGTCCGTTGTCACGGGTACTTCCACGACGAGCTGCGTCTG
TACCTTGTCATGGAGTACTGTCCTGTGGAACTTTACAGGAAGCTTCAATC
ATGTCCAGGGGGAAGGTTTCGAGAAAACGAGGCCGCCAAGTATATAATGC
AGCTGATCGAAGCGCTCCAGTTCCTGCATGGACAAGGCATCATCCACCGT
GACCTCAAGCCAGAAAATCTGCTCTTGGGGCCGACAGGCGATTTACTCCT
GGCAGATTTTGGATGGTGCGTGGGTGCGGTTAGGGGAAGTCACGGAATAC
GGTTGCGGCAGACGTTGTGTGGCACCCCCGACTATGTGAGCCCGGAAATG
CTCAGACACGACGGGAAAGGGTATGCAGAATCTGTCGACACCTGGTCTGT
GGGCGTGCTATGCTACGAGTTTTTGGTCGGCCGCACCCCTTTCAGACGCT
CCTCCCCTGTCACTTTTCAAGAGGAGGACGATGTTGAGGGAGAGGCATTA
AAGAATTTTGAGGGGAGCATGTTCGAGAACATAATGGATGGAAAGGTATC
TTTCCCCTTGTACATGTCAAGAGCTGCACAAGACTTCATCGAGAAGTTGT
TGATCGTGGATACAAGAGTGCGTATGACATTGCAGGAAGCAATGCGGCAT
CCCTGGATGAGGATGCACACTCCGTCTATCCCGCTTTCACCGCATATGTC
GCAGCGAAGATACGCTGCCGACGCGAGCACACCGTCGTATGGAAGGGAAC
TGCTCGGCGTGTATAAGAAGGGAGTCAGCACCGGCACTTCTGGAAACATG
ATGGATGTGCGAAGCCCTCTCGCTGTCACGTCTGGACACAATGCCATTTT
CCAACCGCTGCTGGGCTTGAAATGA

protein sequence of rna1867

>rna1867-protein ID=rna1867-protein|Name=rna1867|organism=Nannochloropsis gaditana|type=polypeptide|length=444bp
MKQFLVDNRVPIFALVFLLPAATSFILSSHALCQRVGPIKYTERPFQGGR
ICHPLRPFLALAASTFTMEVDEESMAEIQEPSYSESDRKHMRRALHLAAQ
ALGKTRPNPVVGCVILDQEGVVVGEGFHPKAGQPHAEVFALKEAGDRARG
GTVYVTLEPCNHHGKTPPCVDALLEAGIKKVVAGMVDPFPLVGGKGLARL
ADNGVEVVVGCEEGKCQALNRPFVHRVQHGTPLGFLPLTYSRQDFVRPAP
ATVQLGDGGKALEMIDAIVVDFNVKGEGLQTVAALQTAGLLQDEVVRIVL
ANDLSALPVEWAKHKKASVRKVVLTTSIAGQEAAVEVLEGRGVEVIAMPT
DPLAVGKYMHGLGLLSALWLLCPEGAKRAVKAGVVQDLWIHATLQEADDL
DGVDDPDFLGRQFGRPMKMSVMSCDAVGTKACLLSLTIDDTATL

mRNA from alignment at CM002458.1:329505..331095-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1867 ID=rna1867|Name=rna1867|organism=Nannochloropsis gaditana|type=mRNA|length=1591bp|location=Sequence derived from alignment at CM002458.1:329505..331095- (Nannochloropsis gaditana)
ATGAAGCAATTTTTGGTGGATAATCGCGTGCCAATTTTTGCTCTGGTATT
CCTCCTTCCGGCAGCTACGTCTTTCATCTTGTCCTCGCACGCCCTGTGTC
AGCGGGTTGGGCCAATTAAGTACACGGAGAGGCCCTTCCAGGGCGGCCGA
ATTTGTCACCCGCTCCGCCCTTTCTTAGCTTTGGCTGCCTCAAGTATGTA
TGTGTCGACTTTTTTCGTCTTGATGTTGTACTAATGCGATCCGGCATGAT
TACTCACGAACATAAGGGATTTACCAGATGTCCCTCGGGGACTAATGACG
AACAAATGTGTTCAACTGACCGGCCCTAACCCTGTCTAACACGTGAAATC
ACGCTCTTGCATGGCAATGAATATCAACTCACGCACTGATATACTCAACT
TTATTATCTTCTATCGCACTGCGGAATATCACGCGCTACCCGACTGTAGC
CTTTACAATGGAGGTTGACGAAGAGTCAATGGCAGAGATACAAGAACCTT
CGTACTCCGAATCGGACCGCAAACACATGCGCCGTGCTTTGCATCTGGCC
GCTCAGGCTCTTGGAAAAACACGACCCAACCCCGTGGTCGGTTGCGTGAT
ACTTGATCAAGAAGGGGTGGTAGTGGGAGAAGGCTTCCATCCCAAAGCCG
GACAACCCCACGCGGAGGTCTTCGCCCTCAAGGAGGCAGGCGACAGGGCC
AGGGGGGGAACGGTCTACGTGACATTGGAGCCGTGCAACCATCACGGAAA
GACCCCGCCATGCGTTGACGCATTGTTGGAGGCCGGGATCAAGAAAGTGG
TGGCGGGCATGGTCGATCCCTTCCCCCTCGTTGGCGGCAAGGGCCTGGCC
CGGCTGGCGGACAACGGGGTGGAGGTGGTGGTGGGCTGTGAGGAGGGGAA
ATGTCAGGCGTTGAACCGGCCTTTCGTGCACCGGGTACAGCATGGGACCC
CCCTGGGTTTCCTCCCCTTGACCTACTCCCGCCAGGATTTTGTCCGCCCG
GCGCCCGCTACAGTCCAGCTCGGGGACGGGGGGAAGGCTTTGGAGATGAT
CGACGCGATTGTGGTCGATTTCAACGTGAAGGGAGAGGGCTTGCAAACGG
TGGCGGCCCTGCAGACTGCCGGACTCCTGCAGGATGAGGTAGTTCGGATC
GTGTTGGCGAACGATCTGAGTGCCCTGCCCGTGGAGTGGGCAAAACACAA
GAAAGCGAGTGTGCGGAAGGTGGTACTAACCACCAGCATAGCTGGACAAG
AAGCAGCAGTGGAGGTGCTGGAGGGCCGCGGTGTCGAGGTGATAGCCATG
CCTACGGACCCACTGGCGGTGGGGAAGTACATGCACGGCCTAGGGCTGCT
CTCGGCCCTCTGGTTGCTGTGTCCCGAGGGGGCGAAACGGGCGGTCAAGG
CGGGAGTGGTGCAAGACCTGTGGATACACGCGACACTGCAGGAGGCGGAC
GATTTGGACGGGGTGGATGATCCGGATTTTCTAGGTCGTCAGTTTGGTCG
ACCTATGAAGATGTCGGTGATGAGCTGTGACGCAGTGGGAACCAAGGCGT
GTTTGTTGAGTTTGACTATAGACGATACTGCAACGCTTTGA

Coding sequence (CDS) from alignment at CM002458.1:329505..331095-

>rna1867 ID=rna1867|Name=rna1867|organism=Nannochloropsis gaditana|type=CDS|length=2670bp|location=Sequence derived from alignment at CM002458.1:329505..331095- (Nannochloropsis gaditana)
CCTTTACAATGGAGGTTGACGAAGAGTCAATGGCAGAGATACAAGAACCT
TCGTACTCCGAATCGGACCGCAAACACATGCGCCGTGCTTTGCATCTGGC
CGCTCAGGCTCTTGGAAAAACACGACCCAACCCCGTGGTCGGTTGCGTGA
TACTTGATCAAGAAGGGGTGGTAGTGGGAGAAGGCTTCCATCCCAAAGCC
GGACAACCCCACGCGGAGGTCTTCGCCCTCAAGGAGGCAGGCGACAGGGC
CAGGGGGGGAACGGTCTACGTGACATTGGAGCCGTGCAACCATCACGGAA
AGACCCCGCCATGCGTTGACGCATTGTTGGAGGCCGGGATCAAGAAAGTG
GTGGCGGGCATGGTCGATCCCTTCCCCCTCGTTGGCGGCAAGGGCCTGGC
CCGGCTGGCGGACAACGGGGTGGAGGTGGTGGTGGGCTGTGAGGAGGGGA
AATGTCAGGCGTTGAACCGGCCTTTCGTGCACCGGGTACAGCATGGGACC
CCCCTGGGTTTCCTCCCCTTGACCTACTCCCGCCAGGATTTTGTCCGCCC
GGCGCCCGCTACAGTCCAGCTCGGGGACGGGGGGAAGGCTTTGGAGATGA
TCGACGCGATTGTGGTCGATTTCAACGTGAAGGGAGAGGGCTTGCAAACG
GTGGCGGCCCTGCAGACTGCCGGACTCCTGCAGGATGAGGTAGTTCGGAT
CGTGTTGGCGAACGATCTGAGTGCCCTGCCCGTGGAGTGGGCAAAACACA
AGAAAGCGAGTGTGCGGAAGGTGGTACTAACCACCAGCATAGCTGGACAA
GAAGCAGCAGTGGAGGTGCTGGAGGGCCGCGGTGTCGAGGTGATAGCCAT
GCCTACGGACCCACTGGCGGTGGGGAAGTACATGCACGGCCTAGGGCTGC
TCTCGGCCCTCTGGTTGCTGTGTCCCGAGGGGGCGAAACGGGCGGTCAAG
GCGGGAGTGGTGCAAGACCTGTGGATACACGCGACACTGCAGGAGGCGGA
CGATTTGGACGGGGTGGATGATCCGGATTTTCTAGGTCGTCAGTTTGGTC
GACCTATGAAGATGTCGGTGATGAGCTGTGACGCAGTGGGAACCAAGGCG
TGTTTGTTGAGTTTGACTATAGACGATACTGCAACGCTTTGAATGAAGCA
ATTTTTGGTGGATAATCGCGTGCCAATTTTTGCTCTGGTATTCCTCCTTC
CGGCAGCTACGTCTTTCATCTTGTCCTCGCACGCCCTGTGTCAGCGGGTT
GGGCCAATTAAGTACACGGAGAGGCCCTTCCAGGGCGGCCGAATTTGTCA
CCCGCTCCGCCCTTTCTTAGCTTTGGCTGCCTCAACCTTTACAATGGAGG
TTGACGAAGAGTCAATGGCAGAGATACAAGAACCTTCGTACTCCGAATCG
GACCGCAAACACATGCGCCGTGCTTTGCATCTGGCCGCTCAGGCTCTTGG
AAAAACACGACCCAACCCCGTGGTCGGTTGCGTGATACTTGATCAAGAAG
GGGTGGTAGTGGGAGAAGGCTTCCATCCCAAAGCCGGACAACCCCACGCG
GAGGTCTTCGCCCTCAAGGAGGCAGGCGACAGGGCCAGGGGGGGAACGGT
CTACGTGACATTGGAGCCGTGCAACCATCACGGAAAGACCCCGCCATGCG
TTGACGCATTGTTGGAGGCCGGGATCAAGAAAGTGGTGGCGGGCATGGTC
GATCCCTTCCCCCTCGTTGGCGGCAAGGGCCTGGCCCGGCTGGCGGACAA
CGGGGTGGAGGTGGTGGTGGGCTGTGAGGAGGGGAAATGTCAGGCGTTGA
ACCGGCCTTTCGTGCACCGGGTACAGCATGGGACCCCCCTGGGTTTCCTC
CCCTTGACCTACTCCCGCCAGGATTTTGTCCGCCCGGCGCCCGCTACAGT
CCAGCTCGGGGACGGGGGGAAGGCTTTGGAGATGATCGACGCGATTGTGG
TCGATTTCAACGTGAAGGGAGAGGGCTTGCAAACGGTGGCGGCCCTGCAG
ACTGCCGGACTCCTGCAGGATGAGGTAGTTCGGATCGTGTTGGCGAACGA
TCTGAGTGCCCTGCCCGTGGAGTGGGCAAAACACAAGAAAGCGAGTGTGC
GGAAGGTGGTACTAACCACCAGCATAGCTGGACAAGAAGCAGCAGTGGAG
GTGCTGGAGGGCCGCGGTGTCGAGGTGATAGCCATGCCTACGGACCCACT
GGCGGTGGGGAAGTACATGCACGGCCTAGGGCTGCTCTCGGCCCTCTGGT
TGCTGTGTCCCGAGGGGGCGAAACGGGCGGTCAAGGCGGGAGTGGTGCAA
GACCTGTGGATACACGCGACACTGCAGGAGGCGGACGATTTGGACGGGGT
GGATGATCCGGATTTTCTAGGTCGTCAGTTTGGTCGACCTATGAAGATGT
CGGTGATGAGCTGTGACGCAGTGGGAACCAAGGCGTGTTTGTTGAGTTTG
ACTATAGACGATACTGCAACGCTTTGAATGAAGCAATTTTTGGTGGATAA
TCGCGTGCCAATTTTTGCTCTGGTATTCCTCCTTCCGGCAGCTACGTCTT
TCATCTTGTCCTCGCACGCCCTGTGTCAGCGGGTTGGGCCAATTAAGTAC
ACGGAGAGGCCCTTCCAGGGCGGCCGAATTTGTCACCCGCTCCGCCCTTT
CTTAGCTTTGGCTGCCTCAA

Synonyms

Publications