rna186, rna186 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna186
Unique Name	rna186
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1074
Alignment location	CM002455.1:485757..487681 -

Link to JBrowse

Properties


Property Name	Value
Product	transcription initiation factor tfiid subunit 5
Orig transcript id	gnl\|cribi\|Naga_100013g31.9821.mrna
Orig protein id	gnl\|cribi\|Naga_100013g31.9821
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:485757..487681 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g31	gene177	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna186	rna186-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30533.1	cds186	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:485757..487681-
coding sequence from alignment at CM002455.1:485757..487681-

mRNA sequence

>rna186 ID=rna186|Name=rna186|organism=Nannochloropsis gaditana|type=mRNA|length=1074bp
ATGTACTGCTCCAGGTTGCTGATGCGTGCGCTCGCCTTTTTTGGGGGCTT
AGCTCTTGTCTCAGTTCTGCCAACTATTACGCAAGGCTACATGCTGGCTA
CTTCCTCTGGAACATGCCAGGGCCCCACCATGTCCCTAGGCGATAGCCCC
AGGAAGGTCCTGGTAACGGGGGCTGGAGGCCGTACGGGGACACTTGTCTT
CCAGAAACTGCAGGCTAAGACGGATTTTCAGCCTATTGGACTCGTCCGTT
CAAAGAAGTCAGCGTCAAAACTGCGGAAAGCTGCAGGAGCCACCGACGAA
CAAATCGTCATTGGTGACGTGATGGACCCGGCGACTCTGAGCAAAGCTTT
GGAAGGTTGCGACTCTCTGATTCTATGCACAAGTGCCACACCCAAAATTC
TACTCTTCAGTGTCATCAAAATCTTGTTTAAGAAGCTCCTGCGCAGGGCG
CCAGGCCGGCCAGAGTTCAAGTTTCCCCCCCGGGGAGAACCCGAAGAGGT
CGACTGGTTAGGCGCAAAGAATCAGGTGGACGCCGCGCTCGCAGCAGGCG
TCAAACACTTTGTATTTCTGGGGTCCATGGGCGGGACCCAACCGGACAAT
TTCTTGAACAGTATCGGAAAACGCCCTGACGGATCGGGGGGGGACATTTT
GCTGTGGAAACGCAAGGCGGAGAAATATCTGATTCAACGGGCCAATAGCC
ACGGGATGTCTTACACGATTGTGCACCCGGGGGGGCTGTTGGACAAGCCA
GGAGGACAGCAGGAGCTCGTTTTTGACGTGGATGACGTGCTTTTGCAGCG
TACGACGCGCTCGATTCCTCGGGAGGACGTGGCGGAGGTATGTGTCCAGG
CATTGCTGCAGTCCAAGGCAAAAAATGTGGCCTTGGATGTCATTGCAGAG
GCAGTTGGTACAGGAACACCTACTACAGATTTTTCGGCACTGTTTGATAG
CTTGCAAAACCGAAGCTGCGCAGGGGAAAGGGGATATAACAGGACACTTG
TATGCATAGTGAGTATCTTCTTCGCGTCTGCGACTAAGCATGATGAACAA
TTTTATGCTTCTTTGGCAACGTGA

protein sequence of rna186

>rna186-protein ID=rna186-protein|Name=rna186|organism=Nannochloropsis gaditana|type=polypeptide|length=613bp
MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVP
SGAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNAL
EAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLEL
RSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLL
IMEILNEQVHVVVEERPPMPRFQVVTGGRGQISHAFTVRWRATGLGGSDV
KDDSSRPPYNAPLFQKLEALAAKTRQEIAMGVADPGNPTVLMASLTNTYD
GCTVARMTTDATQLAAGFHDRAVRVFRLAGEGPVGMENGNGSKLHSDGGE
QAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCV
YRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSD
VSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSP
DGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSAD
GTVLASGGADMTVRTWDMNGDFASLMSSVSLAPHSTFHTKATPVLDVTFT
KRNLLLASGPIMS

mRNA from alignment at CM002455.1:485757..487681-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna186 ID=rna186|Name=rna186|organism=Nannochloropsis gaditana|type=mRNA|length=1925bp|location=Sequence derived from alignment at CM002455.1:485757..487681- (Nannochloropsis gaditana)
ATGGAGGACGCGCAGCAGGAGGAAAGAGTTTTGCACTGGCTAAAAAAGCG
GGGATACACGGAGGTGGCAAAACACTATGAAGAGGACCAGGCTCACGCAG
CGGTGGGCAGCGCCGAAGAGGGCAACGAGAGCGAGGATTCTTCCGTCCCT
AGCGGTGCATTTACTGATGAGCGCTTGTTGTGCAAGCGAATTGGTGAAGC
GAATCAAAGTGCGTTACTCTTTCGCTCTCTCCGTATGTCAGATCCGATGC
TGTACCATCGAAACTACAACGAGCTACAGACGTGGACTTGCAATGCCCTA
GAGGCCTACAAGCCCGAGCTCTTGACAGTGGCCTTTCCTGTCTTCGTTCA
CAGCTACCTGAAACTTGTAGAGCGGGGTATGATAGAAGCAGCGAGAGCCT
TCCTCCAGACCTGGGGACCTGACCATGCAGAAACATATCAACTAGAATTG
CGGAGTTTGACGGCCGTTCAACGGCCCGATCACCTAACGGCGGGCAACGG
ATTTGTCAAGCGCGCCTTGACAGACAAGTTTGTCCTTCGACTCTGCAGCA
TCAGCTATCGCCTCTTACAAAGTTTCTTGAGCGACCACAATCTGTTGCTA
ATCATGGAGATCTTGAACGAGCAAGTGCACGTGGTGGTTGAGGAGCGCCC
TCCTATGCCTCGCTTCCAGGTGGTGACGTTTCGGAATGACGGGATCGCTG
GTGGCGGAGGGGTACCGGGGGGGCGGGGGGTGGACGGAGAGATAGCGGCT
CTCCGGTCAGGGGTGGGCGTGGTCAAATAAGCCACGCGTTTACGGTTCGC
TGGAGAGCGACGGGGCTGGGCGGGTCCGACGTGAAAGATGACAGCAGCAG
GCCTCCATATAATGCCCCTCTCTTCCAAAAACTGGAGGCGCTAGCTGCTA
AGACGCGACAAGAAATAGCGATGGGGGTGGCAGATCCCGGGAATCCGACG
GTATTGATGGCCTCCTTGACCAACACTTACGACGGGTGCACCGTGGCGCG
AATGACGACCGACGCCACTCAACTTGCCGCAGGCTTCCACGACAGGGCAG
TGCGCGTCTTCCGCTTGGCCGGGGAGGGCCCCGTAGGGATGGAAAATGGG
AATGGGAGTAAGCTTCACAGCGACGGGGGGGAGCAGGCCCCTGAGGGTCC
GCTTATCATGAGAGGACACAGCCAACCCGTCCACGGCGTCAGCTGGGCAC
CGGAGCAGCAACATCTCCTCTCGGCCTCCTCGGACGGGACGGTGCGGCTG
TGGGACGTGGCCGCCTCCCGTAACGTGTGTGTGTACAGGTCCCCGACCGA
CGTGCCGGTCTGGGACGTGAGCTTCGCGCCCGTCGGGCACTACTTCGCCT
CCGGGTCCTACGACCGGGTCGGCCGCGTGTGGTGCACAAACAGGACGCAA
CCGGTGCGGCTGCTGGTCGGTCACTACTCGGACGTGTCTTGCGTCGCTTG
GCATCCGAACTGCAGCTATCTCGTCACCGGATCGTGGGATAAGACGGTGC
GGCTGTGGGACCTCGGGAGTGGTCGGTGTTTTCGGCTATATTCGGGACAC
TTTGGGCCGGTTACGGCCTTAACTGTCAGTCCAGATGGTCAGTTTCTTGC
AGGCGCGGGACTGGGAGGTGGCCAAGGGAACGAGGACGGGGTCATTCGGA
TCTGGCAGGTGGCATCAGGGCGGGAGGTGGCTGTTCTGAGAGGACACGAG
GGTCCCGTACATCGCTTGAATTACAGCGCAGACGGGACAGTGCTAGCGAG
TGGAGGCGCTGACATGACGGTGCGGACATGGGACATGAACGGAGACTTCG
CCTCTCTGATGTCATCTGTATCTCTTGCCCCGCATTCCACGTTCCACACG
AAAGCCACTCCAGTGTTGGACGTGACTTTCACAAAGCGGAACCTGCTCCT
TGCCAGTGGTCCGATCATGTCCTAG

Coding sequence (CDS) from alignment at CM002455.1:485757..487681-

>rna186 ID=rna186|Name=rna186|organism=Nannochloropsis gaditana|type=CDS|length=3684bp|location=Sequence derived from alignment at CM002455.1:485757..487681- (Nannochloropsis gaditana)
GGGTGGGCGTGGTCAAATAAGCCACGCGTTTACGGTTCGCTGGAGAGCGA
CGGGGCTGGGCGGGTCCGACGTGAAAGATGACAGCAGCAGGCCTCCATAT
AATGCCCCTCTCTTCCAAAAACTGGAGGCGCTAGCTGCTAAGACGCGACA
AGAAATAGCGATGGGGGTGGCAGATCCCGGGAATCCGACGGTATTGATGG
CCTCCTTGACCAACACTTACGACGGGTGCACCGTGGCGCGAATGACGACC
GACGCCACTCAACTTGCCGCAGGCTTCCACGACAGGGCAGTGCGCGTCTT
CCGCTTGGCCGGGGAGGGCCCCGTAGGGATGGAAAATGGGAATGGGAGTA
AGCTTCACAGCGACGGGGGGGAGCAGGCCCCTGAGGGTCCGCTTATCATG
AGAGGACACAGCCAACCCGTCCACGGCGTCAGCTGGGCACCGGAGCAGCA
ACATCTCCTCTCGGCCTCCTCGGACGGGACGGTGCGGCTGTGGGACGTGG
CCGCCTCCCGTAACGTGTGTGTGTACAGGTCCCCGACCGACGTGCCGGTC
TGGGACGTGAGCTTCGCGCCCGTCGGGCACTACTTCGCCTCCGGGTCCTA
CGACCGGGTCGGCCGCGTGTGGTGCACAAACAGGACGCAACCGGTGCGGC
TGCTGGTCGGTCACTACTCGGACGTGTCTTGCGTCGCTTGGCATCCGAAC
TGCAGCTATCTCGTCACCGGATCGTGGGATAAGACGGTGCGGCTGTGGGA
CCTCGGGAGTGGTCGGTGTTTTCGGCTATATTCGGGACACTTTGGGCCGG
TTACGGCCTTAACTGTCAGTCCAGATGGTCAGTTTCTTGCAGGCGCGGGA
CTGGGAGGTGGCCAAGGGAACGAGGACGGGGTCATTCGGATCTGGCAGGT
GGCATCAGGGCGGGAGGTGGCTGTTCTGAGAGGACACGAGGGTCCCGTAC
ATCGCTTGAATTACAGCGCAGACGGGACAGTGCTAGCGAGTGGAGGCGCT
GACATGACGGTGCGGACATGGGACATGAACGGAGACTTCGCCTCTCTGAT
GTCATCTGTATCTCTTGCCCCGCATTCCACGTTCCACACGAAAGCCACTC
CAGTGTTGGACGTGACTTTCACAAAGCGGAACCTGCTCCTTGCCAGTGGT
CCGATCATGTCCTAGATGGAGGACGCGCAGCAGGAGGAAAGAGTTTTGCA
CTGGCTAAAAAAGCGGGGATACACGGAGGTGGCAAAACACTATGAAGAGG
ACCAGGCTCACGCAGCGGTGGGCAGCGCCGAAGAGGGCAACGAGAGCGAG
GATTCTTCCGTCCCTAGCGGTGCATTTACTGATGAGCGCTTGTTGTGCAA
GCGAATTGGTGAAGCGAATCAAAGTGCGTTACTCTTTCGCTCTCTCCGTA
TGTCAGATCCGATGCTGTACCATCGAAACTACAACGAGCTACAGACGTGG
ACTTGCAATGCCCTAGAGGCCTACAAGCCCGAGCTCTTGACAGTGGCCTT
TCCTGTCTTCGTTCACAGCTACCTGAAACTTGTAGAGCGGGGTATGATAG
AAGCAGCGAGAGCCTTCCTCCAGACCTGGGGACCTGACCATGCAGAAACA
TATCAACTAGAATTGCGGAGTTTGACGGCCGTTCAACGGCCCGATCACCT
AACGGCGGGCAACGGATTTGTCAAGCGCGCCTTGACAGACAAGTTTGTCC
TTCGACTCTGCAGCATCAGCTATCGCCTCTTACAAAGTTTCTTGAGCGAC
CACAATCTGTTGCTAATCATGGAGATCTTGAACGAGCAAGTGCACGTGGT
GGTTGAGGAGCGCCCTCCTATGCCTCGCTTCCAGGTGGTGACGGGTGGGC
GTGGTCAAATAAGCCACGCGTTTACGGTTCGCTGGAGAGCGACGGGGCTG
GGCGGGTCCGACGTGAAAGATGACAGCAGCAGGCCTCCATATAATGCCCC
TCTCTTCCAAAAACTGGAGGCGCTAGCTGCTAAGACGCGACAAGAAATAG
CGATGGGGGTGGCAGATCCCGGGAATCCGACGGTATTGATGGCCTCCTTG
ACCAACACTTACGACGGGTGCACCGTGGCGCGAATGACGACCGACGCCAC
TCAACTTGCCGCAGGCTTCCACGACAGGGCAGTGCGCGTCTTCCGCTTGG
CCGGGGAGGGCCCCGTAGGGATGGAAAATGGGAATGGGAGTAAGCTTCAC
AGCGACGGGGGGGAGCAGGCCCCTGAGGGTCCGCTTATCATGAGAGGACA
CAGCCAACCCGTCCACGGCGTCAGCTGGGCACCGGAGCAGCAACATCTCC
TCTCGGCCTCCTCGGACGGGACGGTGCGGCTGTGGGACGTGGCCGCCTCC
CGTAACGTGTGTGTGTACAGGTCCCCGACCGACGTGCCGGTCTGGGACGT
GAGCTTCGCGCCCGTCGGGCACTACTTCGCCTCCGGGTCCTACGACCGGG
TCGGCCGCGTGTGGTGCACAAACAGGACGCAACCGGTGCGGCTGCTGGTC
GGTCACTACTCGGACGTGTCTTGCGTCGCTTGGCATCCGAACTGCAGCTA
TCTCGTCACCGGATCGTGGGATAAGACGGTGCGGCTGTGGGACCTCGGGA
GTGGTCGGTGTTTTCGGCTATATTCGGGACACTTTGGGCCGGTTACGGCC
TTAACTGTCAGTCCAGATGGTCAGTTTCTTGCAGGCGCGGGACTGGGAGG
TGGCCAAGGGAACGAGGACGGGGTCATTCGGATCTGGCAGGTGGCATCAG
GGCGGGAGGTGGCTGTTCTGAGAGGACACGAGGGTCCCGTACATCGCTTG
AATTACAGCGCAGACGGGACAGTGCTAGCGAGTGGAGGCGCTGACATGAC
GGTGCGGACATGGGACATGAACGGAGACTTCGCCTCTCTGATGTCATCTG
TATCTCTTGCCCCGCATTCCACGTTCCACACGAAAGCCACTCCAGTGTTG
GACGTGACTTTCACAAAGCGGAACCTGCTCCTTGCCAGTGGTCCGATCAT
GTCCTAGATGGAGGACGCGCAGCAGGAGGAAAGAGTTTTGCACTGGCTAA
AAAAGCGGGGATACACGGAGGTGGCAAAACACTATGAAGAGGACCAGGCT
CACGCAGCGGTGGGCAGCGCCGAAGAGGGCAACGAGAGCGAGGATTCTTC
CGTCCCTAGCGGTGCATTTACTGATGAGCGCTTGTTGTGCAAGCGAATTG
GTGAAGCGAATCAAAGTGCGTTACTCTTTCGCTCTCTCCGTATGTCAGAT
CCGATGCTGTACCATCGAAACTACAACGAGCTACAGACGTGGACTTGCAA
TGCCCTAGAGGCCTACAAGCCCGAGCTCTTGACAGTGGCCTTTCCTGTCT
TCGTTCACAGCTACCTGAAACTTGTAGAGCGGGGTATGATAGAAGCAGCG
AGAGCCTTCCTCCAGACCTGGGGACCTGACCATGCAGAAACATATCAACT
AGAATTGCGGAGTTTGACGGCCGTTCAACGGCCCGATCACCTAACGGCGG
GCAACGGATTTGTCAAGCGCGCCTTGACAGACAAGTTTGTCCTTCGACTC
TGCAGCATCAGCTATCGCCTCTTACAAAGTTTCTTGAGCGACCACAATCT
GTTGCTAATCATGGAGATCTTGAACGAGCAAGTGCACGTGGTGGTTGAGG
AGCGCCCTCCTATGCCTCGCTTCCAGGTGGTGAC

Synonyms

Publications