EWM30533.1, cds186 (CDS) Nannochloropsis gaditana

Overview
NameEWM30533.1
Unique Namecds186
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:487005..487681 -
Alignment locationCM002455.1:485757..486921 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30533.1
Producttranscription initiation factor tfiid subunit 5
Orig transcript idgnl|cribi|Naga_100013g31.9821.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:487005..487681 -
CM002455.1supercontigCM002455.1:485757..486921 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom
IPR007582TFIID-su_WD40-assoc_reg
IPR001680WD40_repeat
IPR001632Gprotein_B
IPR020472G-protein_beta_WD-40_rep
Homology
BLAST of EWM30533.1 vs. NCBI_GenBank
Match: gi|585113197|gb|EWM30533.1| (transcription initiation factor tfiid subunit 5 [Nannochloropsis gaditana])

HSP 1 Score: 1271.53 bits (3289), Expect = 0.000e+0
Identity = 613/613 (100.00%), Postives = 613/613 (100.00%), Query Frame = 0
Query:    1 MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPSGAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVTGGRGQISHAFTVRWRATGLGGSDVKDDSSRPPYNAPLFQKLEALAAKTRQEIAMGVADPGNPTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLAGEGPVGMENGNGSKLHSDGGEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDMNGDFASLMSSVSLAPHSTFHTKATPVLDVTFTKRNLLLASGPIMS 613
            MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPSGAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVTGGRGQISHAFTVRWRATGLGGSDVKDDSSRPPYNAPLFQKLEALAAKTRQEIAMGVADPGNPTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLAGEGPVGMENGNGSKLHSDGGEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDMNGDFASLMSSVSLAPHSTFHTKATPVLDVTFTKRNLLLASGPIMS
Sbjct:    1 MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPSGAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVTGGRGQISHAFTVRWRATGLGGSDVKDDSSRPPYNAPLFQKLEALAAKTRQEIAMGVADPGNPTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLAGEGPVGMENGNGSKLHSDGGEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDMNGDFASLMSSVSLAPHSTFHTKATPVLDVTFTKRNLLLASGPIMS 613          
BLAST of EWM30533.1 vs. NCBI_GenBank
Match: gi|553180019|ref|XP_005852804.1| (transcription initiation factor tfiid subunit, partial [Nannochloropsis gaditana CCMP526] >gi|553195757|ref|XP_005856200.1| transcription initiation factor tfiid subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422292848|gb|EKU20150.1| transcription initiation factor tfiid subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422295729|gb|EKU23028.1| transcription initiation factor tfiid subunit, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 470.7 bits (1210), Expect = 1.317e-161
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
Query:    1 MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPSGAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVT 226
            MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPSGAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVT
Sbjct:    1 MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPSGAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVT 226          
BLAST of EWM30533.1 vs. NCBI_GenBank
Match: gi|674235008|gb|KFK27773.1| (hypothetical protein AALP_AA8G427000 [Arabis alpina])

HSP 1 Score: 348.206 bits (892), Expect = 9.565e-108
Identity = 220/687 (32.02%), Postives = 340/687 (49.49%), Query Frame = 0
Query:    7 EERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPSGAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPP------MPRFQVVTGGRGQISH-------------AFTVRWRATGLGGSDVK----------DDSSRPPYNA----PLFQKLE-------------------ALAAKTRQEIAMGV-------------------ADPGNPTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLA-----GEGPVGMENGNGSKLHSDGGEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDMNGDFASLMS------SVSLAPHSTFHTKATPVLDVTFTKRNLLLASGPI 611
            +E V  +LKK+G+   AK +EED  H           +  SS  S  + ++  L K I   +QS          DP  Y   Y++L++W  N+L+ YK ELL V +PVF+H Y+ LV +G  + ARAF  ++  DH   +  +L+ L  V  P HL     F +     K  +++C  SY LL  +L      L++ I+NE ++  V    P      +    +V   + Q +H             +   R   TGL     K          DDS +    +       +KL+                   +LA + + E+A+ V                   +    P+V   +  NT++G   A ++ D + +A+GF D +++V+ +A     G G +  EN    ++    G ++     ++ GHS PV+  +++P    LLS+S+D T+RLW    + N+  Y+   + PVWDV F+P GHYFAS S+DR  R+W  +R QP+R++ GH SDV CV WHPNC+Y+ TGS DKTVRLWD+ +G+C R++ GH   V +L +SPDG+++A        G+EDG I +W +++ R +  L GH   V  L YS +G++LASG AD TV+ WD+        +      S  L    TF TK+TPV  + F++RNLL A+G +
Sbjct:    7 DEFVRGYLKKKGFKSSAKAFEEDLHH-----------NNGSSFSSIDYHNDPELTKLIRSFSQSK--------DDPSQYSECYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSFRKDHEMIHLRDLQKLEGVLAPSHLEEME-FARSLRQSKVNIKICQYSYDLLLQYLHKIESTLMLGIINEHINFQVHSGHPNSASEDIEAVTIVGSFQDQANHINQKEIQWGLLEDSLEDRLEKTGLLSDSEKGQGESKDGDMDDSKKRSIESGKQGSSIKKLKKDKAGNATAKVVRQETSIVSLAPRVKSELALPVMSTEVEQSILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNCASISHDGSLVASGFSDSSIKVWDMAKIGQTGSGALPGENDTNDQIVGPNGRRSYT---LLLGHSGPVYSATFSPPGDFLLSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFSPFGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGKCARIFVGHRSMVLSLAMSPDGRYMAS-------GDEDGTIMMWDLSTARCITPLMGHNSCVWSLTYSGEGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAAGAL 662          
BLAST of EWM30533.1 vs. NCBI_GenBank
Match: gi|567139369|ref|XP_006394764.1| (hypothetical protein EUTSA_v10003767mg [Eutrema salsugineum] >gi|557091403|gb|ESQ32050.1| hypothetical protein EUTSA_v10003767mg [Eutrema salsugineum])

HSP 1 Score: 332.798 bits (852), Expect = 8.506e-102
Identity = 219/692 (31.65%), Postives = 330/692 (47.69%), Query Frame = 0
Query:    1 MEDAQQEERVLHWLKKRGYTEVAKHYEEDQAHAAVGSAEEGNESEDSSVPSGAFTDERLLCKRIGEANQSALLFRSLRMSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPP------------MPRFQVV------------------------TGG-------------RGQISHAFTVRWRATGLGGSDVKDDSSRPPYNAPLF-----QKLEALAAKTRQEIAMGVADPGNPTVLMASLTNTYDGCTVA-------------------RMTTDATQLAAGFHDRAVRVFRLAGEGPVGMENGNGSKLHSDG--GEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDMNGDFASLMS------SVSLAPHSTFHTKATPVLDVTFTKRNLLLASGPI 611
            M+  Q +E V+ +LKK+G+   AK  EE           + N S  SS+    + ++  L K I   +QS          DP  Y   Y++L++W  N+L+ YK ELL V +PVF+H Y+ LV +G  + ARAF  ++  DH   +  +L+ L  V  P HL     F +     K  +++C  SY LL  +L      L++ I+NE ++  V    P            +  FQ                          TGG              G +  +   R    G  GS +K        NA          + +LA + + E+A+ V        ++  L N     +VA                    ++ D + +A GF D +V+V+ +A  G  G     G    +D   G        ++ GHS PV+  +++P    +LS+S+D T+RLW    + N+  Y+   + PVWDV F+P GHYFAS S+DR  R+W  +R QP+R++ GH SDV CV WHPNC+Y+ TGS DKTVRLWD+ +G C R++ GH   V +L +SPDG+++A        G+EDG I +W +++ R +  L GH   V  L+YS +G++LASG AD TV+ WD+        +      S  L    TF TK+TPV  + F++RNLL A+G +
Sbjct:    1 MDPEQVDEFVMCYLKKKGFNSAAKRLEE--------VLHQNNGSSFSSID---YHNDPELTKLIRSFSQSE--------DDPTRYREGYSKLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARAFFNSFRKDHEMIHIRDLQKLEGVLAPSHLEEME-FARSLRQSKVNIKICQYSYDLLLQYLHRTESTLMLGIINEHINFQVYSGQPNSASDDIEAVTIVGSFQDTANHINQKEIQWGLLEDSLEDRLEKTGGLLSDSEKGQGESKDGDMDDSSKKRSTEIGKQGSSIKKLKKDKAGNATAKVARQETSMVSLAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVAMPSVSFYTFLNTHNGLNCASISHDGSLVAGGFSDSSVKVWDMAKIGQAGSCALQGENDTNDQIVGPNGRRNYTLLLGHSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKG-HNYPVWDVQFSPFGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGKYMAS-------GDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTSSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFSRRNLLFAAGAL 664          
BLAST of EWM30533.1 vs. NCBI_GenBank
Match: gi|909137542|gb|KNE63228.1| (hypothetical protein AMAG_08377 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 326.635 bits (836), Expect = 4.190e-100
Identity = 196/573 (34.21%), Postives = 293/573 (51.13%), Query Frame = 0
Query:   85 YHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVTGGRGQISHAFTVRWRA---TGLGGSDVKDDSSRPPYNAP------LFQKLEALAAKTRQEIAMGVADPGN---------PTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLA-----------GEGPVGMENGNGSKLHSDGGEQAPEGP--LIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDMNGDFASLMSSVSLAPHS---------------TFHTKATPVLDVTFTKRNLLLASGPI 611
            Y  +Y++L+ W   +L+ +K EL  + FP+F HSYL ++ +GM+  AR F  ++  DH   +  +L  L  +  P  +   N + +   +++F + + S +++LL SFL D++ + ++ ILN  V + V       +    TG  G  S+      ++   TG+   DV+  S +     P          +  + AK  +E    + D  +         P++   +  NTYD  T A MT DAT +AAGF D A+R+  L            G  P  M +   + +      + PEG    ++RGH+  V G S++P++++L+S S D TVRLW +    NV  YR  +  PVWDV F P GHYFA+ S+DR  R+W  +   P+R+  GH SDV  V +HPN SYL TGS DKT RLWD+  G C R++ GH G V A+  SP+G+ LA AG       +D  + +W +ASG  +  + GH G V  + +S+DG +LAS G D TVR WD           V + P +               TF TK TP + V FT+RNLLLA+GP 
Sbjct:   48 YDSSYSKLRRWIEESLDVFKTELKDILFPLFEHSYLDMIAKGMVNEARQFFDSYKSDHVAFHSNDLHQLDMIHFPTQIQE-NEYARMHRSNRFTVSMTSTTFQLLISFLEDNDFVALLRILNTHVKIDVTNSKAKKKASGNTGVLGLTSNLGEFHAQSEVHTGMPPLDVRQLSLQHRAENPADPPPPKPVPVPPMKAKEVRETVELIKDVAHRASLSPTSLPSICFYTWHNTYDALTCATMTHDATLIAAGFSDSAIRIHSLTKDPLRAVIPRPGLTPDDMHHLGPADI---DAMREPEGSPSKLLRGHAGAVFGTSFSPDKRYLVSCSEDQTVRLWSLETFANVVCYRGHS-YPVWDVEFGPEGHYFATASHDRTARLWSCDHIYPLRIFAGHLSDVDTVRFHPNSSYLATGSSDKTARLWDVSRGACVRVFPGHSGAVQAVAFSPNGRLLATAG-------DDKYVHLWDIASGTRIKKMGGHRGLVTSVVFSSDGALLASAGLDGTVRLWDALKGEGEDEPVVVVDPATGKKKRKKVANNDLIETFRTKKTPAIGVQFTRRNLLLATGPF 608          
BLAST of EWM30533.1 vs. NCBI_GenBank
Match: gi|1101630424|ref|XP_018978710.1| (PREDICTED: transcription initiation factor TFIID subunit 5 isoform X3 [Cyprinus carpio])

HSP 1 Score: 318.931 bits (816), Expect = 4.201e-97
Identity = 196/598 (32.78%), Postives = 310/598 (51.84%), Query Frame = 0
Query:   81 DPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQV--VTG-----GRGQISHAFTVR------------------------------WRATGLGGSDVKDDSSRPPYN-APLFQ-----KLEALA--AKTRQEIAMGVADPGN-PTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVF--------RLAGEGPVGM-ENGNGSKLHSDGGEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDM--------NGDFASLMSSVSLAPHS------TFHTKATPVLDVTFTKRNLLLASG 609
            DP LY   Y+ L+ +  + L+ ++ EL  + +P+FVH YL+LV       A+AF + +  D    YQ +LR L  + + +HL  GN  +    T +FVLR+   SY+LL+  L + +   I  I+ E +++ + +  P  + Q+  ++G     GR +++ A                                   +   LG    K D + P  N  PL +     KL+ +    ++ + I +G   P N P++   +L N Y G T    T D++ LA GF D  VRV+        ++     + M +  +   L     E+      I+ GHS PV+GVS++P++ +LLS+S DGTVRLW +     +  Y+   + PVWD  F+P G+YF SG +DRV R+W T+  QP+R+  GH +DV+C  +HPN +Y+ TGS D+T+RLWD+ +G C R+++GH GP+ +L  SP+G+FLA        G+ DG + +W +  G  +  L+GH   ++ L +S DG +LASG  D TVR W+           DF +    + L  +S      T+H+K+TPV  + FT+RNLLLA+G
Sbjct:   24 DPSLYQVYYSGLKNFIESVLDCHRAELSQLFYPLFVHMYLELVYNNHENEAKAFFEKFSGDQECYYQDDLRVLCGLTKKEHL-KGNEVLLDFRTSRFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAGEGRRELNKAKVFHGLLKEPEIEVPLDDEDDEAENEEGKPKKKKTKKDSLGSKSKKQDPNAPQQNRIPLPELKDSDKLDKIMYMKESTKRIRLG---PENLPSICFYTLLNAYQGLTAVDFTDDSSLLAGGFADSTVRVWSVTPKKLRKVKSAADLNMIDKESDDVLERIMDEKTASESKILYGHSGPVYGVSFSPDRNYLLSSSEDGTVRLWSLLTFTCLVGYKG-HNYPVWDTQFSPFGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSTDRTIRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFLAS-------GSTDGRVLLWDIGHGLMIGELKGHTDTIYSLKFSRDGEILASGSMDNTVRLWNSMKAFDEVETDDFTATTGHIHLPDNSQELLLGTYHSKSTPVTHLHFTRRNLLLAAG 609          
BLAST of EWM30533.1 vs. NCBI_GenBank
Match: gi|1126221583|ref|XP_019645033.1| (PREDICTED: transcription initiation factor TFIID subunit 5-like [Branchiostoma belcheri])

HSP 1 Score: 307.76 bits (787), Expect = 4.346e-92
Identity = 187/574 (32.58%), Postives = 297/574 (51.74%), Query Frame = 0
Query:  100 LEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVTGGRGQISHAFTVRWRATGLGG-------------------------------------SDVKDDSSRPPYNAPLFQ-----KLEALAAKTRQEIAMGVADPGNPTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLAGEGPVGMENGNG-SKLHSDGG--------EQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDMNGDFASLMSS-----------VSLAP--HSTFHTKATPVLDVTFTKRNLLLASG 609
            L+A+K EL  + +PVF+H YL+LV     + A+ F   +  +  + +Q +LR+L+ V+  + +   N  +    + KFVLR+   SY+ L+ +L  H+   ++ IL + + + V +  P  R QV       +  A     +   L G                                     +   D ++ PP   PL +     KLE + +       + +     P++   +L N +   +   ++ D++ LAAGF D  VRV+ L+ +    M   +   +L  +          E++     ++ GH+ PV+  S++P+++ LL++S DGTVRLW +    N+ VY+   + PVWDV F+P G+YF SG +DRV R+W T++ QP+R+ VGHYSDV+C+ +HPN +Y+ TGS D+TVRLWD+ +G C R+ +GH   V  L  SPDG++LA AG+       D  + +W +A GR +A ++GH  PV+ L +S +GT+LASGG D TV+ WD+   F  +  S           V + P    +F TKATPVL + FT RNLLL  G
Sbjct:  124 LDAHKHELGCLLYPVFIHMYLQLVYNKHEKEAQKFFNRFSVEQEDWHQEDLRTLSTVKTREQMEV-NDLMDTFRSSKFVLRMSRDSYQSLRRYLKQHDHRELLSILQDHLFIDVFDGVPRNREQVQATSGAMMGEARRDANKVKVLYGLPKEPDINVPLDDDDEGGDGEDKPKKKKQKKDLLLNKNKKADPNAPPPSRIPLPELKDADKLEKVLSWKEGLKRVPLGRDNLPSICFYTLANAFQNVSAVGISEDSSLLAAGFEDCNVRVWSLSPQRLRTMRGASELDQLDKEADDIVERMMDEKSAADSWLLHGHTGPVYATSFSPDREQLLTSSEDGTVRLWSLHTYSNLVVYKG-HNYPVWDVQFSPTGYYFVSGGHDRVARLWGTDQFQPIRMFVGHYSDVTCIQYHPNSNYVATGSSDRTVRLWDVLNGNCVRVMTGHKAAVHTLAWSPDGRYLASAGV-------DKNVLLWDIAYGRLLAEMKGHTDPVYSLCFSREGTILASGGIDNTVKIWDVQKVFEEIAGSDDLTSLDRASLVEVGPLLLGSFATKATPVLKLHFTHRNLLLGCG 688          
BLAST of EWM30533.1 vs. NCBI_GenBank
Match: gi|1127415786|gb|OLL21698.1| (Transcription initiation factor TFIID subunit 5 [Neolecta irregularis DAH-3])

HSP 1 Score: 306.99 bits (785), Expect = 4.348e-92
Identity = 202/614 (32.90%), Postives = 304/614 (49.51%), Query Frame = 0
Query:   85 YHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGN-GFVKRALTDKFVLRLCSISYRLLQSFLSDH------------NLLLIMEIL---------------------------NE------QVHVVVEERPPMPRFQVVTGGRGQISHAFTVRWRATG----------LGGSDVKDDSSR-----PPYNAPLFQKLEALAAKTRQEIAMGVADPGN--PTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLAGE---GPVGMENGNGSKLHSDGGEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHE-GPVHRLNYSADGTVLASGGADMTVRTWDMNG----DFASLMSSVSLA----------PHST--------FHTKATPVLDVTFTKRNLLLASG 609
            Y + Y  +++W  ++L+ Y+PEL  + +P+FVHS+L LV      +A+ F  T+G +H   +  ++R L+ V    H+       + RA  +K+ LR    ++ L+  FL +H            N  + ME+L                           NE      ++ ++  E       + +       S A   ++ +T           L  +   D  SR     PP     FQ         R+ + +   DP +  P+V M +L NT+DG      + DA+ LA GF +  V+++ L G+   GP G    +G+ + S            M  HS PV+GV ++P+ ++LLS S D TVRLW +     +  Y+     P+WDV+F P GHYFA+ S+D+  R+W      P+R+  GH SDV CV +HPN +Y+ TGS DKT RLWD+  G+  R+++GH GPVT +T+SPDG++LA AG       EDGVI IW + SG+ +  +RGH  G ++ L++S +GTVL SGG+DMTVR WD+      D A+L S    A          P +T        FHTK TPV  V FT+ NL+LA+G
Sbjct:   64 YAQAYVLVRSWVESSLDLYRPELRRILYPLFVHSFLDLVAAAESASAKDFFDTYGKEHELHHPHDMRILSTVTSQSHIKENELAILYRA--NKYNLRFSRTTFDLMMHFLDEHHQAGGKIALRLINSYINMEVLAGARGAATSEDILAEGEGISGQHDKSLNEYNSQDVKLGILPPEESAEKEMEAILADEDAKSSATCAQFGSTDSSSLVEEYKKLRHASSSDGPSREAVPLPPMKGIDFQVELRTVKDYRRRLKL---DPQSALPSVCMYTLHNTHDGLNCIDFSKDASMLAGGFAESYVKIWSLKGDKLKGP-GRPEKDGAGMSSRR----------MISHSGPVYGVDFSPDNRYLLSCSEDTTVRLWSLDTFTAMVAYKGHAH-PIWDVAFGPFGHYFATASHDQTARLWSCEHITPLRIFAGHLSDVDCVQFHPNSAYVATGSSDKTCRLWDVQRGQSVRVFAGHNGPVTCITISPDGKWLASAG-------EDGVISIWDLGSGKRLKAMRGHAPGSIYSLSFSQEGTVLVSGGSDMTVRVWDVKKSPCIDTATLASITVAAARTQLAGKEKPENTQTDDHLKAFHTKRTPVYQVHFTRTNLVLAAG 653          
BLAST of EWM30533.1 vs. NCBI_GenBank
Match: gi|1178057462|gb|ORE12402.1| (WD40 repeat-like protein [Rhizopus microsporus])

HSP 1 Score: 292.738 bits (748), Expect = 3.117e-87
Identity = 183/593 (30.86%), Postives = 294/593 (49.58%), Query Frame = 0
Query:   60 LCKRIGEANQSALLFRSLR---MSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVTGGRGQISHAFTVRWRATGLGGSDVKDDSSRPPY-NAPLFQKLEALAAKTRQEIAMGVADPGNPTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLAGEGPVGMENGNGSKLHSDGGEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDMN------------GDF--------------------------ASLMSSVSLAPH-STFHTKATPVLDVTFTKRNLLLASG 609
            L ++    N +  L +S++     D      +Y  L+ W  NAL+ YK EL T+ +P+F++ +L+   RG+++ A  F   +  DH   ++ EL ++               ++  L  K+ ++L  I   L   FL +     ++ I+N+  H+ + + PP    +V   G+               L      D+    PY N  +  ++E+L  + R+ +++G      P++ + +  +T D      ++ DAT +A GF +  ++V+ L GE    + + N    +  G    P   L+  GHS P+ G+S++ + Q+L+S S D TVRLW +   +N+  Y+S  + PVWDV F P G YFA+ S+DR  R+W  +   P+R+  GH SDV+ V +HPN  YLVTGS DKTVRLWD+  G C R+++GH G + A+ +SP+G+++A AG       ED  I IW + SGR +  + GH G ++ + ++AD T+L SG  D TVR WD+N             DF                           S  + +    H S F T+ TP+  V FTKRNL LA+G
Sbjct:   48 LLQQYKTTNNTCDLLKSIQEHDFEDIETVQSSYEHLREWIMNALDIYKNELQTLLYPIFIYIFLQFKARGLVDYANDFFHAFKQDHV-MHEDELNTVFNTTS----------IQDQLAHKYTVKLSPIPLELFYRFLHESQHKTLLRIVNQ--HLNINKLPPASAGEVSDQGKSMDEARIKSEEETMEL------DEPFILPYENTDVQAEIESLN-EIRKLVSLGSL--AQPSICLYTFHHTQDQLNCIAISEDATLIAGGFSESFIKVWNLKGEK---LRDRNEMDKNLPG---TPYKKLV--GHSGPIFGLSFSHDNQYLISCSEDKTVRLWCLKTYKNLVCYKS-HNYPVWDVDFGPYGFYFATASHDRTARLWSCDHVHPLRIFAGHLSDVNTVKFHPNSKYLVTGSCDKTVRLWDVQRGTCVRVFTGHTGSIHAVAISPNGRWMASAG-------EDTNIIIWDLGSGRRLKTMTGHTGFIYSITFNADSTILVSGSGDGTVRVWDVNKNTPNEFREEQSSDFKRTKLNGKAKDKKDKMKPLLMDLNAKKSKRNMLESDDHLSMFSTRNTPIYIVQFTKRNLCLAAG 602          
BLAST of EWM30533.1 vs. NCBI_GenBank
Match: gi|729714719|emb|CEI89007.1| (hypothetical protein RMCBS344292_03382 [Rhizopus microsporus])

HSP 1 Score: 292.738 bits (748), Expect = 3.252e-87
Identity = 183/593 (30.86%), Postives = 294/593 (49.58%), Query Frame = 0
Query:   60 LCKRIGEANQSALLFRSLR---MSDPMLYHRNYNELQTWTCNALEAYKPELLTVAFPVFVHSYLKLVERGMIEAARAFLQTWGPDHAETYQLELRSLTAVQRPDHLTAGNGFVKRALTDKFVLRLCSISYRLLQSFLSDHNLLLIMEILNEQVHVVVEERPPMPRFQVVTGGRGQISHAFTVRWRATGLGGSDVKDDSSRPPY-NAPLFQKLEALAAKTRQEIAMGVADPGNPTVLMASLTNTYDGCTVARMTTDATQLAAGFHDRAVRVFRLAGEGPVGMENGNGSKLHSDGGEQAPEGPLIMRGHSQPVHGVSWAPEQQHLLSASSDGTVRLWDVAASRNVCVYRSPTDVPVWDVSFAPVGHYFASGSYDRVGRVWCTNRTQPVRLLVGHYSDVSCVAWHPNCSYLVTGSWDKTVRLWDLGSGRCFRLYSGHFGPVTALTVSPDGQFLAGAGLGGGQGNEDGVIRIWQVASGREVAVLRGHEGPVHRLNYSADGTVLASGGADMTVRTWDMN------------GDF--------------------------ASLMSSVSLAPH-STFHTKATPVLDVTFTKRNLLLASG 609
            L ++    N +  L +S++     D      +Y  L+ W  NAL+ YK EL T+ +P+F++ +L+   RG+++ A  F   +  DH   ++ EL ++               ++  L  K+ ++L  I   L   FL +     ++ I+N+  H+ + + PP    +V   G+               L      D+    PY N  +  ++E+L  + R+ +++G      P++ + +  +T D      ++ DAT +A GF +  ++V+ L GE    + + N    +  G    P   L+  GHS P+ G+S++ + Q+L+S S D TVRLW +   +N+  Y+S  + PVWDV F P G YFA+ S+DR  R+W  +   P+R+  GH SDV+ V +HPN  YLVTGS DKTVRLWD+  G C R+++GH G + A+ +SP+G+++A AG       ED  I IW + SGR +  + GH G ++ + ++AD T+L SG  D TVR WD+N             DF                           S  + +    H S F T+ TP+  V FTKRNL LA+G
Sbjct:   48 LLQQYKTTNNTCDLLKSIQEHDFEDIETVQSSYKHLREWIMNALDIYKNELQTLLYPIFIYIFLQFKARGLVDYANDFFHAFKQDHV-MHEDELNTVFNTTS----------IQDQLAHKYTVKLSPIPLELFYRFLHESQHKTLLRIVNQ--HLNINKLPPASAGEVSDQGKSMDEARIKSEEETMEL------DEPFILPYENTDVQAEIESLN-EIRKLVSLGSL--AQPSICLYTFHHTQDQLNCIAISEDATLIAGGFSESFIKVWNLKGEK---LRDRNEMDKNLPG---TPYKKLV--GHSGPIFGLSFSHDNQYLISCSEDKTVRLWCLKTYKNLVCYKS-HNYPVWDVDFGPYGFYFATASHDRTARLWSCDHVHPLRIFAGHLSDVNTVKFHPNSKYLVTGSCDKTVRLWDVQRGTCVRVFTGHTGSIHAVAISPNGRWMASAG-------EDTNIIIWDLGSGRRLKTMTGHTGFIYSITFNADSTILVSGSGDGTVRVWDVNKNTPNEFREEQSSDFKRTKLNGKAKDKKDKMKPLLMDLNAKKSKRNMLESDDHLSMFSTRNTPIYIVQFTKRNLCLAAG 602          
The following BLAST results are available for this feature:
BLAST of EWM30533.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113197|gb|EWM30533.1|0.000e+0100.00transcription initiation factor tfiid subunit 5 [N... [more]
gi|553180019|ref|XP_005852804.1|1.317e-161100.00transcription initiation factor tfiid subunit, par... [more]
gi|674235008|gb|KFK27773.1|9.565e-10832.02hypothetical protein AALP_AA8G427000 [Arabis alpin... [more]
gi|567139369|ref|XP_006394764.1|8.506e-10231.65hypothetical protein EUTSA_v10003767mg [Eutrema sa... [more]
gi|909137542|gb|KNE63228.1|4.190e-10034.21hypothetical protein AMAG_08377 [Allomyces macrogy... [more]
gi|1101630424|ref|XP_018978710.1|4.201e-9732.78PREDICTED: transcription initiation factor TFIID s... [more]
gi|1126221583|ref|XP_019645033.1|4.346e-9232.58PREDICTED: transcription initiation factor TFIID s... [more]
gi|1127415786|gb|OLL21698.1|4.348e-9232.90Transcription initiation factor TFIID subunit 5 [N... [more]
gi|1178057462|gb|ORE12402.1|3.117e-8730.86WD40 repeat-like protein [Rhizopus microsporus][more]
gi|729714719|emb|CEI89007.1|3.252e-8730.86hypothetical protein RMCBS344292_03382 [Rhizopus m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna186rna186Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications