rna1859, rna1859 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1859
Unique Name	rna1859
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1016
Alignment location	CM002458.1:309892..311467 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100002g167.4932.mrna
Orig protein id	gnl\|cribi\|Naga_100002g167.4932
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:309892..311467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g167	gene1777	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1859	rna1859-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28813.1	cds1854	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:309892..311467+
coding sequence from alignment at CM002458.1:309892..311467+

mRNA sequence

>rna1859 ID=rna1859|Name=rna1859|organism=Nannochloropsis gaditana|type=mRNA|length=1016bp
AAACATACATGCGACATGGACCTTCTCGAAATATTTGTGTGATGACGTCG
GATTGGAATAAATTGATATATAGGCATTCAATGGCAACCGATGTACAATC
GAAACAATCCTATAATCACAGAATTGTGCCAAAGGCCGTGCTTATGGAGG
GAGACATGAAAGGATGAGGTGGTTACCAACTCCCTTGGGTTTTGTCCCCG
TTGCATAAGCCGTGAGAGAAGTTGTTGTGCAGCTTGCAGTGTGTCTTTTT
TCATTTTGAGTCTAGGGGCTGTCATTCACATTTATGGAAACGGCAATAAG
GATCGAAGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCTTGCGCTTT
ACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCGCCCTCGTC
TTGGGGCACGACATTTCGCACCACTGTCCTTCCCTCATGTATGGAGAGCT
GAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGAGTTAGAAG
CCCTACCGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTTCGGGAATT
GGGAAGCAGATATTCACGGCAGCATGTGTATACGCCTGGAAGCGGTGCAT
TGGGGTGGAAATCTATGAGAAACGCGCAAAACTTGCAGAACAGGCATTGC
AAAGATGGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTACCCGAGTG
GTCGACTTCGCTTGCGATGACATTGTCGAAATCGAGATGGAGGGATTCCA
AGTCATCCTCCTCGTGTCGGCAGCATTTACCGATACGCTGATGCGGAGCA
TAGCGAAGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCATATGTATC
ACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAATCTGAGCG
CGAAGAGCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAAAATACTTG
CGTGATAAATAACGATTTGGCCGTGCGGGTGCTCACAAAGTCGCTTAACA
AATGCAATAAGTCCCG

protein sequence of rna1859

>rna1859-protein ID=rna1859-protein|Name=rna1859|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
MKSSPAWFLYTGIPVIIDIRTDRTPTTVEATFAPAHSLLRAPTHFINMTR
NVPPLFNFDFPSCEYITQHPRTHELLGFVLAGVAIGLIIITVLTVYPGEP
FDSSVLGPIHCKPLQSESDRKRFQRLGDKPEEMDVNVDCRRTSTCSGAHA
ITSKMWNYDSSGDSCDIFPSKISSIRHDCTVDRVKSHFSPLSTTRKSRCN
GQEQQAQADALHRLLLREDRVWQQFQRLPRTFQSTLGLSESQVRAAIRQE
VSQAEFEVPPGTGTETLPKDTGVIVDPMGMSMRVNLAFYLIAFGALVYFV
DMDYGYAATCLFTRWFPKEAEVLGFKPVSD

mRNA from alignment at CM002458.1:309892..311467+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1859 ID=rna1859|Name=rna1859|organism=Nannochloropsis gaditana|type=mRNA|length=1576bp|location=Sequence derived from alignment at CM002458.1:309892..311467+ (Nannochloropsis gaditana)
CCTGACCAATGAAAAGCTCGCCTGCCTGGTTCTTATATACAGGCATACCC
GTCATCATTGACATAAGAACTGACAGAACGCCTACAACGGTCGAAGCCAC
GTTCGCTCCTGCGCACTCTCTTTTAAGAGCGCCGACTCACTTTATCAACA
TGACCCGTAATGTTCCGCCCCTCTTCAATTTCGACTTCCCGTCCTGCGAG
TATATCACGCAACATCCGCGCACTCACGAGCTGCTAGGCTTTGTACTGGT
AAGAAAATTTGCTCTTCTGAGCCATCTTTTTAAAAATGGCATCCCTTAGC
AGTCCTTATCCTCAAACACGCCTTATGTTTGAAATAGGCTGGCGTGGCCA
TCGGCCTCATCATTATAACAGTCCTAACCGTGTATCCGGGAGAGCCTTTC
GACTCTTCTGTACTGGGACCTATACACTGCAAGCCATTGCAGTCAGAAAG
CGATCGAAAAAGATTTCAAAGACTTGGGGACAagccggaggagatggatg
tAAATGTAGATTGTAGGCGTACCAGCACTTGTTCGGGGGCGCATGCAATT
ACGTCAAAGATGTGGAATTATGACTCCAGCGGAGACAGCTGTGACATTTT
CCCAAGCAAGATTTCAAGCATCCGCCACGACTGCACCGTTGACAGGGTTA
AGAGtcatttttctcccctctcgaCCACCCGGAAATCTCGCTGCAATGGA
CAAGAACAGCAAGCCCAGGCTGACGCACTCCACCGCCTTTTGCTTCGGGA
AGACCGCGTGTGGCAGCAATTTCAACGCCTCCCTCGGACTTTTCAGAGCA
CGCTGGGTTTATCGGAATCTCAAGTGCGTGCGGCGATCCGTCAAGAGGTA
TCGCAGGCAGAATTCGAGGTCCCACCGGGAACAGGTACCGAGACACTCCC
AAAGGGTAAGCACCACTTTATAATGAGTGATAGTCTTAATTATTTGCCTT
GAAAGATACGCATACGACTCTTTATTCTTACACTGGAAAGACACAGGAGT
TATCGTCGACCCTATGGGCATGTCAAGTAAGTTTTTATCTGTTTCAACTG
GTCTCTCTTGAGCCATTCCGAGTACGTTATATCGGTtgctttaaaaaaaa
tgcttactttctcttcctttgcaCCACTAAACTTAGTGCGAGTGAACCTA
GCCTTCTATCTGATTGCTTTCGGCGCCTTGGTATATTTCGTCGACATGGA
CTATGGTTATGCAGCCACATGCCTGTTCACTCGATGGTTTCCGAAAGAGG
CAGAAGTATTAGGGTTCAAACCGGTTAGTGATTAAGCATGACTGAGACAG
CTTCCATGTGATTTGTACAAGGGAACTAGTTAAATCCAAGCAGTCTGAGG
TTTATGTGAATAGATACGCACGTGTTTGTAAATGTGGATTGTGTACATGC
AAAGGTAATGAAAGCTAAAATGCATGGATTGAAGGCATAGATGGACATCT
TTCCTACGTTGGCAAGGACTTTAAGTTAAGATGCTGAGTAAACCATACCT
GGGAGAGTTCCGGGAATCGCCAGATTTGTGACAAACGTGTGGAAGAAAAA
CGAAATGAATGTCTTTCTCAAATACC

Coding sequence (CDS) from alignment at CM002458.1:309892..311467+

>rna1859 ID=rna1859|Name=rna1859|organism=Nannochloropsis gaditana|type=CDS|length=3972bp|location=Sequence derived from alignment at CM002458.1:309892..311467+ (Nannochloropsis gaditana)
ATGAAAAGCTCGCCTGCCTGGTTCTTATATACAGGCATACCCGTCATCAT
TGACATAAGAACTGACAGAACGCCTACAACGGTCGAAGCCACGTTCGCTC
CTGCGCACTCTCTTTTAAGAGCGCCGACTCACTTTATCAACATGACCCGT
AATGTTCCGCCCCTCTTCAATTTCGACTTCCCGTCCTGCGAGTATATCAC
GCAACATCCGCGCACTCACGAGCTGCTAGGCTTTGTACTGGCTGGCGTGG
CCATCGGCCTCATCATTATAACAGTCCTAACCGTGTATCCGGGAGAGCCT
TTCGACTCTTCTGTACTGGGACCTATACACTGCAAGCCATTGCAGTCAGA
AAGCGATCGAAAAAGATTTCAAAGACTTGGGGACAagccggaggagatgg
atgtAAATGTAGATTGTAGGCGTACCAGCACTTGTTCGGGGGCGCATGCA
ATTACGTCAAAGATGTGGAATTATGACTCCAGCGGAGACAGCTGTGACAT
TTTCCCAAGCAAGATTTCAAGCATCCGCCACGACTGCACCGTTGACAGGG
TTAAGAGtcatttttctcccctctcgaCCACCCGGAAATCTCGCTGCAAT
GGACAAGAACAGCAAGCCCAGGCTGACGCACTCCACCGCCTTTTGCTTCG
GGAAGACCGCGTGTGGCAGCAATTTCAACGCCTCCCTCGGACTTTTCAGA
GCACGCTGGGTTTATCGGAATCTCAAGTGCGTGCGGCGATCCGTCAAGAG
GTATCGCAGGCAGAATTCGAGGTCCCACCGGGAACAGGTACCGAGACACT
CCCAAAGGACACAGGAGTTATCGTCGACCCTATGGGCATGTCAATGCGAG
TGAACCTAGCCTTCTATCTGATTGCTTTCGGCGCCTTGGTATATTTCGTC
GACATGGACTATGGTTATGCAGCCACATGCCTGTTCACTCGATGGTTTCC
GAAAGAGGCAGAAGTATTAGGGTTCAAACCGGTTAGTGATTAAATGAAAA
GCTCGCCTGCCTGGTTCTTATATACAGGCATACCCGTCATCATTGACATA
AGAACTGACAGAACGCCTACAACGGTCGAAGCCACGTTCGCTCCTGCGCA
CTCTCTTTTAAGAGCGCCGACTCACTTTATCAACATGACCCGTAATGTTC
CGCCCCTCTTCAATTTCGACTTCCCGTCCTGCGAGTATATCACGCAACAT
CCGCGCACTCACGAGCTGCTAGGCTTTGTACTGGCTGGCGTGGCCATCGG
CCTCATCATTATAACAGTCCTAACCGTGTATCCGGGAGAGCCTTTCGACT
CTTCTGTACTGGGACCTATACACTGCAAGCCATTGCAGTCAGAAAGCGAT
CGAAAAAGATTTCAAAGACTTGGGGACAagccggaggagatggatgtAAA
TGTAGATTGTAGGCGTACCAGCACTTGTTCGGGGGCGCATGCAATTACGT
CAAAGATGTGGAATTATGACTCCAGCGGAGACAGCTGTGACATTTTCCCA
AGCAAGATTTCAAGCATCCGCCACGACTGCACCGTTGACAGGGTTAAGAG
tcatttttctcccctctcgaCCACCCGGAAATCTCGCTGCAATGGACAAG
AACAGCAAGCCCAGGCTGACGCACTCCACCGCCTTTTGCTTCGGGAAGAC
CGCGTGTGGCAGCAATTTCAACGCCTCCCTCGGACTTTTCAGAGCACGCT
GGGTTTATCGGAATCTCAAGTGCGTGCGGCGATCCGTCAAGAGGTATCGC
AGGCAGAATTCGAGGTCCCACCGGGAACAGGTACCGAGACACTCCCAAAG
GACACAGGAGTTATCGTCGACCCTATGGGCATGTCAATGCGAGTGAACCT
AGCCTTCTATCTGATTGCTTTCGGCGCCTTGGTATATTTCGTCGACATGG
ACTATGGTTATGCAGCCACATGCCTGTTCACTCGATGGTTTCCGAAAGAG
GCAGAAGTATTAGGGTTCAAACCGGTTAGTGATTAAATGAAAAGCTCGCC
TGCCTGGTTCTTATATACAGGCATACCCGTCATCATTGACATAAGAACTG
ACAGAACGCCTACAACGGTCGAAGCCACGTTCGCTCCTGCGCACTCTCTT
TTAAGAGCGCCGACTCACTTTATCAACATGACCCGTAATGTTCCGCCCCT
CTTCAATTTCGACTTCCCGTCCTGCGAGTATATCACGCAACATCCGCGCA
CTCACGAGCTGCTAGGCTTTGTACTGGCTGGCGTGGCCATCGGCCTCATC
ATTATAACAGTCCTAACCGTGTATCCGGGAGAGCCTTTCGACTCTTCTGT
ACTGGGACCTATACACTGCAAGCCATTGCAGTCAGAAAGCGATCGAAAAA
GATTTCAAAGACTTGGGGACAagccggaggagatggatgtAAATGTAGAT
TGTAGGCGTACCAGCACTTGTTCGGGGGCGCATGCAATTACGTCAAAGAT
GTGGAATTATGACTCCAGCGGAGACAGCTGTGACATTTTCCCAAGCAAGA
TTTCAAGCATCCGCCACGACTGCACCGTTGACAGGGTTAAGAGtcatttt
tctcccctctcgaCCACCCGGAAATCTCGCTGCAATGGACAAGAACAGCA
AGCCCAGGCTGACGCACTCCACCGCCTTTTGCTTCGGGAAGACCGCGTGT
GGCAGCAATTTCAACGCCTCCCTCGGACTTTTCAGAGCACGCTGGGTTTA
TCGGAATCTCAAGTGCGTGCGGCGATCCGTCAAGAGGTATCGCAGGCAGA
ATTCGAGGTCCCACCGGGAACAGGTACCGAGACACTCCCAAAGGACACAG
GAGTTATCGTCGACCCTATGGGCATGTCAATGCGAGTGAACCTAGCCTTC
TATCTGATTGCTTTCGGCGCCTTGGTATATTTCGTCGACATGGACTATGG
TTATGCAGCCACATGCCTGTTCACTCGATGGTTTCCGAAAGAGGCAGAAG
TATTAGGGTTCAAACCGGTTAGTGATTAAATGAAAAGCTCGCCTGCCTGG
TTCTTATATACAGGCATACCCGTCATCATTGACATAAGAACTGACAGAAC
GCCTACAACGGTCGAAGCCACGTTCGCTCCTGCGCACTCTCTTTTAAGAG
CGCCGACTCACTTTATCAACATGACCCGTAATGTTCCGCCCCTCTTCAAT
TTCGACTTCCCGTCCTGCGAGTATATCACGCAACATCCGCGCACTCACGA
GCTGCTAGGCTTTGTACTGGCTGGCGTGGCCATCGGCCTCATCATTATAA
CAGTCCTAACCGTGTATCCGGGAGAGCCTTTCGACTCTTCTGTACTGGGA
CCTATACACTGCAAGCCATTGCAGTCAGAAAGCGATCGAAAAAGATTTCA
AAGACTTGGGGACAagccggaggagatggatgtAAATGTAGATTGTAGGC
GTACCAGCACTTGTTCGGGGGCGCATGCAATTACGTCAAAGATGTGGAAT
TATGACTCCAGCGGAGACAGCTGTGACATTTTCCCAAGCAAGATTTCAAG
CATCCGCCACGACTGCACCGTTGACAGGGTTAAGAGtcatttttctcccc
tctcgaCCACCCGGAAATCTCGCTGCAATGGACAAGAACAGCAAGCCCAG
GCTGACGCACTCCACCGCCTTTTGCTTCGGGAAGACCGCGTGTGGCAGCA
ATTTCAACGCCTCCCTCGGACTTTTCAGAGCACGCTGGGTTTATCGGAAT
CTCAAGTGCGTGCGGCGATCCGTCAAGAGGTATCGCAGGCAGAATTCGAG
GTCCCACCGGGAACAGGTACCGAGACACTCCCAAAGGACACAGGAGTTAT
CGTCGACCCTATGGGCATGTCAATGCGAGTGAACCTAGCCTTCTATCTGA
TTGCTTTCGGCGCCTTGGTATATTTCGTCGACATGGACTATGGTTATGCA
GCCACATGCCTGTTCACTCGATGGTTTCCGAAAGAGGCAGAAGTATTAGG
GTTCAAACCGGTTAGTGATTAA

Synonyms

Publications