EWM28813.1, cds1854 (CDS) Nannochloropsis gaditana

Overview
NameEWM28813.1
Unique Namecds1854
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:309900..310139 +
Alignment locationCM002458.1:310229..310796 +
Alignment locationCM002458.1:310882..310917 +
Alignment locationCM002458.1:311028..311176 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28813.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100002g167.4932.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:309900..310139 +
CM002458.1supercontigCM002458.1:310229..310796 +
CM002458.1supercontigCM002458.1:310882..310917 +
CM002458.1supercontigCM002458.1:311028..311176 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM28813.1 vs. NCBI_GenBank
Match: gi|585111236|gb|EWM28813.1| (hypothetical protein Naga_100002g167 [Nannochloropsis gaditana])

HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0 
Query:    1 MKSSPAWFLYTGIPVIIDIRTDRTPTTVEATFAPAHSLLRAPTHFINMTRNVPPLFNFDFPSCEYITQHPRTHELLGFVLAGVAIGLIIITVLTVYPGEPFDSSVLGPIHCKPLQSESDRKRFQRLGDKPEEMDVNVDCRRTSTCSGAHAITSKMWNYDSSGDSCDIFPSKISSIRHDCTVDRVKSHFSPLSTTRKSRCNGQEQQAQADALHRLLLREDRVWQQFQRLPRTFQSTLGLSESQVRAAIRQEVSQAEFEVPPGTGTETLPKDTGVIVDPMGMSMRVNLAFYLIAFGALVYFVDMDYGYAATCLFTRWFPKEAEVLGFKPVSD 330
            MKSSPAWFLYTGIPVIIDIRTDRTPTTVEATFAPAHSLLRAPTHFINMTRNVPPLFNFDFPSCEYITQHPRTHELLGFVLAGVAIGLIIITVLTVYPGEPFDSSVLGPIHCKPLQSESDRKRFQRLGDKPEEMDVNVDCRRTSTCSGAHAITSKMWNYDSSGDSCDIFPSKISSIRHDCTVDRVKSHFSPLSTTRKSRCNGQEQQAQADALHRLLLREDRVWQQFQRLPRTFQSTLGLSESQVRAAIRQEVSQAEFEVPPGTGTETLPKDTGVIVDPMGMSMRVNLAFYLIAFGALVYFVDMDYGYAATCLFTRWFPKEAEVLGFKPVSD
Sbjct:    1 MKSSPAWFLYTGIPVIIDIRTDRTPTTVEATFAPAHSLLRAPTHFINMTRNVPPLFNFDFPSCEYITQHPRTHELLGFVLAGVAIGLIIITVLTVYPGEPFDSSVLGPIHCKPLQSESDRKRFQRLGDKPEEMDVNVDCRRTSTCSGAHAITSKMWNYDSSGDSCDIFPSKISSIRHDCTVDRVKSHFSPLSTTRKSRCNGQEQQAQADALHRLLLREDRVWQQFQRLPRTFQSTLGLSESQVRAAIRQEVSQAEFEVPPGTGTETLPKDTGVIVDPMGMSMRVNLAFYLIAFGALVYFVDMDYGYAATCLFTRWFPKEAEVLGFKPVSD 330
[Close]
BLAST of EWM28813.1 vs. NCBI_GenBank
Match: gi|585111237|gb|EWM28814.1| (hypothetical protein Naga_100002g167 [Nannochloropsis gaditana])

HSP 1 Score: 679.863 bits (1753), Expect = 0.000e+0
Identity = 328/330 (99.39%), Postives = 328/330 (99.39%), Query Frame = 0 
Query:    1 MKSSPAWFLYTGIPVIIDIRTDRTPTTVEATFAPAHSLLRAPTHFINMTRNVPPLFNFDFPSCEYITQHPRTHELLGFVLAGVAIGLIIITVLTVYPGEPFDSSVLGPIHCKPLQSESDRKRFQRLGDKPEEMDVNVDCRRTSTCSGAHAITSKMWNYDSSGDSCDIFPSKISSIRHDCTVDRVKSHFSPLSTTRKSRCNGQEQQAQADALHRLLLREDRVWQQFQRLPRTFQSTLGLSESQVRAAIRQEVSQAEFEVPPGTGTETLPKDTGVIVDPMGMSMRVNLAFYLIAFGALVYFVDMDYGYAATCLFTRWFPKEAEVLGFKPVSD 330
            MKSSPAWFLYTGIPVIIDIRTDRTPTTVEATFAPAHSLLRAPTHFINMTRNVPPLFNFDFPSCEYITQHPRTHELLGFVLAGVAIGLIIITVLTVYPGEPFDSSVLGPIHCKPLQSESDRKRFQRLGDKPEEMDVNVDCRRTSTCSGAHAITSKMWNYDSSGDSCDIFPSKISSIRHDCTVDRVKSHFSPLSTTRKSRCNGQEQQAQADALHRLLLREDRVWQQFQRLPRTFQSTLGLSESQVRAAIRQEVSQAEFEVPPGTGTETLPK  GVIVDPMGMSMRVNLAFYLIAFGALVYFVDMDYGYAATCLFTRWFPKEAEVLGFKPVSD
Sbjct:    1 MKSSPAWFLYTGIPVIIDIRTDRTPTTVEATFAPAHSLLRAPTHFINMTRNVPPLFNFDFPSCEYITQHPRTHELLGFVLAGVAIGLIIITVLTVYPGEPFDSSVLGPIHCKPLQSESDRKRFQRLGDKPEEMDVNVDCRRTSTCSGAHAITSKMWNYDSSGDSCDIFPSKISSIRHDCTVDRVKSHFSPLSTTRKSRCNGQEQQAQADALHRLLLREDRVWQQFQRLPRTFQSTLGLSESQVRAAIRQEVSQAEFEVPPGTGTETLPK--GVIVDPMGMSMRVNLAFYLIAFGALVYFVDMDYGYAATCLFTRWFPKEAEVLGFKPVSD 328
The following BLAST results are available for this feature:
BLAST of EWM28813.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111236|gb|EWM28813.1|0.000e+0100.00hypothetical protein Naga_100002g167 [Nannochlorop... [more]
gi|585111237|gb|EWM28814.1|0.000e+099.39hypothetical protein Naga_100002g167 [Nannochlorop... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1859rna1859Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications