rna1857, rna1857 (mRNA) Nannochloropsis gaditana

Overview
Namerna1857
Unique Namerna1857
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2291
Alignment locationCM002458.1:307788..310456 -

Link to JBrowse

Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100002g170.4849.mrna
Orig protein idgnl|cribi|Naga_100002g170.4849
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:307788..310456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g170gene1776Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28730.1cds1852Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1857rna1857-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1857 ID=rna1857|Name=rna1857|organism=Nannochloropsis gaditana|type=mRNA|length=2291bp
CCACATCTTTGACGTAATTGCATGCGCCCCCGAACAAGTGCTGGTACGCC
TACAATCTACATTTACATCCATCTCCTCCGGCTTGTCCCCAAGTCTTTGA
AATCTTTTTCGATCGCTTTCTGACTGCAATGGCTTGCAGTGTATAGGTCC
CAGTACAGAAGAGTCGAAAGGCTCTCCCGGATACACGGTTAGGACTGTTA
TAATGATGAGGCCGATGGCCACGCCAGCCTATTTCAAACATAAGGCGTGT
TTGAGGATAAGGACTGCTAAGGGATGCCATTTTTAAAAAGATGGCTCAGA
AGAGCAAATTTTCTTACCAGTACAAAGCCTAGCAGCTCGTGAGTGCGCGG
ATGTTGCGTGATATACTCGCAGGACGGGAAGTCGAAATTGAAGAGGGGCG
GAACATTACGGGTCATGTTGATAAAGTGAGTCGGCGCTCTTAAAAGAGAG
TGCGCAGGAGCGAACGTGGCTTCGACCGTTGTAGGCGTTCTGTCAGTTCT
TATGTCAATGATGACGGGTATGCCTGTATATAAGAACCAGGCAGGCGAGC
TTTTCATTGGTCAGGTTATACTATTCGTCCTTTCTTTTCGCCTTATGAGC
CGTCGTTCGCCAAGCGAGCGAACGAGCAGCGGCCCTCTCGCCAACCAACG
TGACCTGAAATCCAAAAACCTTACACTTAATGAATAGACACGCTTCGGAC
ACAGGTATCCGAGGAGTGGCTGGCCCGACTTGGGAGGACTCCGTGGCAGC
GACTTCACTTTAGCTTGTTGGTAGGGTCGGCATCTCTAAGGGATATCTTC
ACCTCCCCGCGGCCTCGTCCTGTGCTTTTCGATGGCAGACGATGGGAAAA
CTGTCGGAGACCATGTCTTGGTCATCCTCTTCCTGCTTCTTGTGTTGCTC
GTGGGCTGGACATACTGGTTTCGTTCTCGTCCCCGCACATCCGAAGTGGA
CTTCGAGAGAGAAGGCGATCAAAAGACGAGAATAAGACATGAACGAAATA
TTTAAGCTCCGACCGCACAACGAGACAAAAGTATTTAACAATGCTGAAAT
GTGAATCGAAGCAAGGAGAGACGCAGGGGTGAGAATAGATGGTTTAACAA
AGAATTGTGCCAAAGGCCGTGCTTATGGAGGGAGACATGAAAGGATGAGG
TGGTTACCAACTCCCTTGGGTTTTGTCCCCGTTGCATAAGCCGTGAGAGA
AGTTGTTGTGCAGCTTGCAGTGTGTCTTTTTTCATTTTGAGTCTAGGGGT
ATGGAATATGCATCGACTAGAGAACGTTGGGTTCCTACTGTCATATTTTT
CAACTTCTTTTCCTCTCTCGTCTTCATAGAACGGTATAAATATGAAAGGA
CTGGGTTCTTTGAAGACAAATGTTGAAAAAGAAGGACTTGCAATTTGTCC
CTGTGCATCATTTGGTTCTATGGAAGAGAGCGAATGGAGAGCACGGCAGG
ACTTCGAATGTTTCTCGAGAGTACTCTTTCTCCGTGTCGAAACCCACAGA
TCCTTCACTCCACACGGCATTCCCTTCCTTCTTCTTTCACAGGCTGTCAT
TCACATTTATGGAAACGGCAATAAGGATCGAAGGAGCGTCTAGGTCTTCA
AAATTTCAAGATGGGCTTGCGCTTTACTCCCGCCTCGAGCCTTGTCTCTA
CCCCTCTTTGAACCCCGCCCTCGTCTTGGGGCACGACATTTCGCACCACT
GTCCTTCCCTCATGTATGGAGAGCTGAGCGGAGAGACTCTGGTAAAAGCC
TTAGGCCTGATTGATGAGTTAGAAGCCCTACCGAGAGAGGGGGAAGGCTC
GCTTATTGACATTGGTTCGGGAATTGGGAAGCAGATATTCACGGCAGCAT
GTGTATACGCCTGGAAGCGGTGCATTGGGGTGGAAATCTATGAGAAACGC
GCAAAACTTGCAGAACAGGCATTGCAAAGATGGAAAAGTAAACAGAGTAG
TATACCCATGCTGCGTACCCGAGTGGTCGACTTCGCTTGCGATGACATTG
TCGAAATCGAGATGGAGGGATTCCAAGTCATCCTCCTCGTGTCGGCAGCA
TTTACCGATACGCTGATGCGGAGCATAGCGAAGGTTCTGGATTCACAAGC
GGTCGGGACTTTGGCCATATGTATCACAAAAGCTCTCCCTGGGCCAAAGT
GGGAAGTGGTGCACAAATCTGAGCGCGAAGAGCCCTGGGGACGGGCATGG
TTAATTATTCAAAAGAAAATACTTGCGTGATAAATAACGATTTGGCCGTG
CGGGTGCTCACAAAGTCGCTTAACAAATGCAATAAGTCCCG
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protein sequence of rna1857

>rna1857-protein ID=rna1857-protein|Name=rna1857|organism=Nannochloropsis gaditana|type=polypeptide|length=286bp
MLKKKDLQFVPVHHLVLWKRANGEHGRTSNVSREYSFSVSKPTDPSLHTA
FPSFFFHRLSFTFMETAIRIEGASRSSKFQDGLALYSRLEPCLYPSLNPA
LVLGHDISHHCPSLMYGELSGETLVKALGLIDELEALPREGEGSLIDIGS
GIGKQIFTAACVYAWKRCIGVEIYEKRAKLAEQALQRWKSKQSSIPMLRT
RVVDFACDDIVEIEMEGFQVILLVSAAFTDTLMRSIAKVLDSQAVGTLAI
CITKALPGPKWEVVHKSEREEPWGRAWLIIQKKILA
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mRNA from alignment at CM002458.1:307788..310456-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1857 ID=rna1857|Name=rna1857|organism=Nannochloropsis gaditana|type=mRNA|length=2669bp|location=Sequence derived from alignment at CM002458.1:307788..310456- (Nannochloropsis gaditana)
CCACATCTTTGACGTAATTGCATGCGCCCCCGAACAAGTGCTGGTACGCC
TACAATCTACATTTACATCCATCTCCTCCGGCTTGTCCCCAAGTCTTTGA
AATCTTTTTCGATCGCTTTCTGACTGCAATGGCTTGCAGTGTATAGGTCC
CAGTACAGAAGAGTCGAAAGGCTCTCCCGGATACACGGTTAGGACTGTTA
TAATGATGAGGCCGATGGCCACGCCAGCCTATTTCAAACATAAGGCGTGT
TTGAGGATAAGGACTGCTAAGGGATGCCATTTTTAAAAAGATGGCTCAGA
AGAGCAAATTTTCTTACCAGTACAAAGCCTAGCAGCTCGTGAGTGCGCGG
ATGTTGCGTGATATACTCGCAGGACGGGAAGTCGAAATTGAAGAGGGGCG
GAACATTACGGGTCATGTTGATAAAGTGAGTCGGCGCTCTTAAAAGAGAG
TGCGCAGGAGCGAACGTGGCTTCGACCGTTGTAGGCGTTCTGTCAGTTCT
TATGTCAATGATGACGGGTATGCCTGTATATAAGAACCAGGCAGGCGAGC
TTTTCATTGGTCAGGTTATACTATTCGTCCTTTCTTTTCGCCTTATGAGC
CGTCGTTCGCCAAGCGAGCGAACGAGCAGCGGCCCTCTCGCCAACCAACG
TGACCTGAAATCCAAAAACCTTACACTTAATGAATAGACACGCTTCGGAC
ACAGGTATCCGAGGAGTGGCTGGCCCGACTTGGGAGGACTCCGTGGCAGC
GACTTCACTTTAGCTTGTTGGTAGGGTCGGCATCTCTAAGGGATATCTTC
ACCTCCCCGCGGCCTCGTCCTGTGCTTTTCGATGGCAGACGATGGGAAAA
CTGTCGGAGACCATGTCTTGGTCATCCTCTTCCTGCTTCTTGTGTTGCTC
GTGGGCTGGACATACTGGTTTCGTTCTCGTCCCCGCACATCCGAAGTGGA
CTTCGAGGTGTGTATCGGGATTATTGAGCTGGGCGTGGGAGGGTTAGCCA
GCAAAAAGCGTCTGAATGCCTCAAGCATGTTAGCTTCTGTAGGACTTCAC
ATCACCTTCTGGCTTTGAAAATGGGTGTTTACACATTCAAATTAGTCACT
CATCCAAGTTACATCCCGCATACCATAGAGAGAAGGCGATCAAAAGACGA
GAATAAGACATGAACGAAATATTTAAGCTCCGACCGCACAACGAGACAAA
AGTATTTAACAATGCTGAAATGTGAATCGAAGCAAGGAGAGACGCAGGGG
TGAGAATAGATGGTTTAACAAAGGTGAAGTCCGATGGATCGCAGGGTGAA
ATGGGTGCGTAGGGGAAAATGAAAGGGGGAAAGGGGGGGAGGAGGAAAAA
GAGTGTTCCAAACATACATGCGACATGGACCTTCTCGAAATATTTGTGTG
ATGACGTCGGATTGGAATAAATTGATATATAGGCATTCAATGGCAACCGA
TGTACAATCGAAACAATCCTATAATCACAGAATTGTGCCAAAGGCCGTGC
TTATGGAGGGAGACATGAAAGGATGAGGTGGTTACCAACTCCCTTGGGTT
TTGTCCCCGTTGCATAAGCCGTGAGAGAAGTTGTTGTGCAGCTTGCAGTG
TGTCTTTTTTCATTTTGAGTCTAGGGGTATGGAATATGCATCGACTAGAG
AACGTTGGGTTCCTACTGTCATATTTTTCAACTTCTTTTCCTCTCTCGTC
TTCATAGAACGGTATAAATATGAAAGGACTGGGTTCTTTGAAGACAAATG
TTGAAAAAGAAGGACTTGCAATTTGTCCCTGTGCATCATTTGGTTCTATG
GAAGAGAGCGAATGGAGAGCACGGCAGGACTTCGAATGTTTCTCGAGAGT
ACTCTTTCTCCGTGTCGAAACCCACAGATCCTTCACTCCACACGGCATTC
CCTTCCTTCTTCTTTCACAGGCTGTCATTCACATTTATGGAAACGGCAAT
AAGGATCGAAGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCTTGCGC
TTTACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCGCCCTC
GTCTTGGGGCACGACATTTCGCACCACTGTCCTTCCCTCATGTATGGAGA
GCTGAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGAGTTAG
AAGCCCTACCGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTTCGGGA
ATTGGGAAGCAGATATTCACGGCAGCATGTGTATACGCCTGGAAGCGGTG
CATTGGGGTGGAAATCTATGAGAAACGCGCAAAACTTGCAGAACAGGCAT
TGCAAAGATGGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTACCCGA
GTGGTCGACTTCGCTTGCGATGACATTGTCGAAATCGAGATGGAGGGATT
CCAAGTCATCCTCCTCGTGTCGGCAGCATTTACCGATACGCTGATGCGGA
GCATAGCGAAGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCATATGT
ATCACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAATCTGA
GCGCGAAGAGCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAAAATAC
TTGCGTGATAAATAACGATTTGGCCGTGCGGGTGCTCACAAAGTCGCTTA
ACAAATGCAATAAGTCCCG
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Coding sequence (CDS) from alignment at CM002458.1:307788..310456-

>rna1857 ID=rna1857|Name=rna1857|organism=Nannochloropsis gaditana|type=CDS|length=861bp|location=Sequence derived from alignment at CM002458.1:307788..310456- (Nannochloropsis gaditana)
ATGTTGAAAAAGAAGGACTTGCAATTTGTCCCTGTGCATCATTTGGTTCT
ATGGAAGAGAGCGAATGGAGAGCACGGCAGGACTTCGAATGTTTCTCGAG
AGTACTCTTTCTCCGTGTCGAAACCCACAGATCCTTCACTCCACACGGCA
TTCCCTTCCTTCTTCTTTCACAGGCTGTCATTCACATTTATGGAAACGGC
AATAAGGATCGAAGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCTTG
CGCTTTACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCGCC
CTCGTCTTGGGGCACGACATTTCGCACCACTGTCCTTCCCTCATGTATGG
AGAGCTGAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGAGT
TAGAAGCCCTACCGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTTCG
GGAATTGGGAAGCAGATATTCACGGCAGCATGTGTATACGCCTGGAAGCG
GTGCATTGGGGTGGAAATCTATGAGAAACGCGCAAAACTTGCAGAACAGG
CATTGCAAAGATGGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTACC
CGAGTGGTCGACTTCGCTTGCGATGACATTGTCGAAATCGAGATGGAGGG
ATTCCAAGTCATCCTCCTCGTGTCGGCAGCATTTACCGATACGCTGATGC
GGAGCATAGCGAAGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCATA
TGTATCACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAATC
TGAGCGCGAAGAGCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAAAA
TACTTGCGTGA
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Synonyms
Publications