rna1856, rna1856 (mRNA) Nannochloropsis gaditana

Overview
Namerna1856
Unique Namerna1856
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2267
Alignment locationCM002458.1:307788..310456 -

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Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100002g170.4850.mrna
Orig protein idgnl|cribi|Naga_100002g170.4850
GbkeymRNA
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:307788..310456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100002g170gene1776Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28731.1cds1851Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1856rna1856-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1856 ID=rna1856|Name=rna1856|organism=Nannochloropsis gaditana|type=mRNA|length=2267bp
CCACATCTTTGACGTAATTGCATGCGCCCCCGAACAAGTGCTGGTACGCC
TACAATCTACATTTACATCCATCTCCTCCGGCTTGTCCCCAAGTCTTTGA
AATCTTTTTCGATCGCTTTCTGACTGCAATGGCTTGCAGTGTATAGGTCC
CAGTACAGAAGAGTCGAAAGGCTCTCCCGGATACACGGTTAGGACTGTTA
TAATGATGAGGCCGATGGCCACGCCAGCCTATTTCAAACATAAGGCGTGT
TTGAGGATAAGGACTGCTAAGGGATGCCATTTTTAAAAAGATGGCTCAGA
AGAGCAAATTTTCTTACCAGTACAAAGCCTAGCAGCTCGTGAGTGCGCGG
ATGTTGCGTGATATACTCGCAGGACGGGAAGTCGAAATTGAAGAGGGGCG
GAACATTACGGGTCATGTTGATAAAGTGAGTCGGCGCTCTTAAAAGAGAG
TGCGCAGGAGCGAACGTGGCTTCGACCGTTGTAGGCGTTCTGTCAGTTCT
TATGTCAATGATGACGGGTATGCCTGTATATAAGAACCAGGCAGGCGAGC
TTTTCATTGGTCAGGTTATACTATTCGTCCTTTCTTTTCGCCTTATGAGC
CGTCGTTCGCCAAGCGAGCGAACGAGCAGCGGCCCTCTCGCCAACCAACG
TGACCTGAAATCCAAAAACCTTACACTTAATGAATAGACACGCTTCGGAC
ACAGGTATCCGAGGAGTGGCTGGCCCGACTTGGGAGGACTCCGTGGCAGC
GACTTCACTTTAGCTTGTTGGTAGGGTCGGCATCTCTAAGGGATATCTTC
ACCTCCCCGCGGCCTCGTCCTGTGCTTTTCGATGGCAGACGATGGGAAAA
CTGTCGGAGACCATGTCTTGGTCATCCTCTTCCTGCTTCTTGTGTTGCTC
GTGGGCTGGACATACTGGTTTCGTTCTCGTCCCCGCACATCCGAAGTGGA
CTTCGAGAGAGAAGGCGATCAAAAGACGAGAATAAGACATGAACGAAATA
TTTAAGCTCCGACCGCACAACGAGACAAAAGTATTTAACAATGCTGAAAT
GTGAATCGAAGCAAGGAGAGACGCAGGGAATTGTGCCAAAGGCCGTGCTT
ATGGAGGGAGACATGAAAGGATGAGGTGGTTACCAACTCCCTTGGGTTTT
GTCCCCGTTGCATAAGCCGTGAGAGAAGTTGTTGTGCAGCTTGCAGTGTG
TCTTTTTTCATTTTGAGTCTAGGGGTATGGAATATGCATCGACTAGAGAA
CGTTGGGTTCCTACTGTCATATTTTTCAACTTCTTTTCCTCTCTCGTCTT
CATAGAACGGTATAAATATGAAAGGACTGGGTTCTTTGAAGACAAATGTT
GAAAAAGAAGGACTTGCAATTTGTCCCTGTGCATCATTTGGTTCTATGGA
AGAGAGCGAATGGAGAGCACGGCAGGACTTCGAATGTTTCTCGAGAGTAC
TCTTTCTCCGTGTCGAAACCCACAGATCCTTCACTCCACACGGCATTCCC
TTCCTTCTTCTTTCACAGGCTGTCATTCACATTTATGGAAACGGCAATAA
GGATCGAAGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCTTGCGCTT
TACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCGCCCTCGT
CTTGGGGCACGACATTTCGCACCACTGTCCTTCCCTCATGTATGGAGAGC
TGAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGAGTTAGAA
GCCCTACCGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTTCGGGAAT
TGGGAAGCAGATATTCACGGCAGCATGTGTATACGCCTGGAAGCGGTGCA
TTGGGGTGGAAATCTATGAGAAACGCGCAAAACTTGCAGAACAGGCATTG
CAAAGATGGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTACCCGAGT
GGTCGACTTCGCTTGCGATGACATTGTCGAAATCGAGATGGAGGGATTCC
AAGTCATCCTCCTCGTGTCGGCAGCATTTACCGATACGCTGATGCGGAGC
ATAGCGAAGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCATATGTAT
CACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAATCTGAGC
GCGAAGAGCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAAAATACTT
GCGTGATAAATAACGATTTGGCCGTGCGGGTGCTCACAAAGTCGCTTAAC
AAATGCAATAAGTCCCG
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protein sequence of rna1856

>rna1856-protein ID=rna1856-protein|Name=rna1856|organism=Nannochloropsis gaditana|type=polypeptide|length=286bp
MLKKKDLQFVPVHHLVLWKRANGEHGRTSNVSREYSFSVSKPTDPSLHTA
FPSFFFHRLSFTFMETAIRIEGASRSSKFQDGLALYSRLEPCLYPSLNPA
LVLGHDISHHCPSLMYGELSGETLVKALGLIDELEALPREGEGSLIDIGS
GIGKQIFTAACVYAWKRCIGVEIYEKRAKLAEQALQRWKSKQSSIPMLRT
RVVDFACDDIVEIEMEGFQVILLVSAAFTDTLMRSIAKVLDSQAVGTLAI
CITKALPGPKWEVVHKSEREEPWGRAWLIIQKKILA
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mRNA from alignment at CM002458.1:307788..310456-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1856 ID=rna1856|Name=rna1856|organism=Nannochloropsis gaditana|type=mRNA|length=2669bp|location=Sequence derived from alignment at CM002458.1:307788..310456- (Nannochloropsis gaditana)
CCACATCTTTGACGTAATTGCATGCGCCCCCGAACAAGTGCTGGTACGCC
TACAATCTACATTTACATCCATCTCCTCCGGCTTGTCCCCAAGTCTTTGA
AATCTTTTTCGATCGCTTTCTGACTGCAATGGCTTGCAGTGTATAGGTCC
CAGTACAGAAGAGTCGAAAGGCTCTCCCGGATACACGGTTAGGACTGTTA
TAATGATGAGGCCGATGGCCACGCCAGCCTATTTCAAACATAAGGCGTGT
TTGAGGATAAGGACTGCTAAGGGATGCCATTTTTAAAAAGATGGCTCAGA
AGAGCAAATTTTCTTACCAGTACAAAGCCTAGCAGCTCGTGAGTGCGCGG
ATGTTGCGTGATATACTCGCAGGACGGGAAGTCGAAATTGAAGAGGGGCG
GAACATTACGGGTCATGTTGATAAAGTGAGTCGGCGCTCTTAAAAGAGAG
TGCGCAGGAGCGAACGTGGCTTCGACCGTTGTAGGCGTTCTGTCAGTTCT
TATGTCAATGATGACGGGTATGCCTGTATATAAGAACCAGGCAGGCGAGC
TTTTCATTGGTCAGGTTATACTATTCGTCCTTTCTTTTCGCCTTATGAGC
CGTCGTTCGCCAAGCGAGCGAACGAGCAGCGGCCCTCTCGCCAACCAACG
TGACCTGAAATCCAAAAACCTTACACTTAATGAATAGACACGCTTCGGAC
ACAGGTATCCGAGGAGTGGCTGGCCCGACTTGGGAGGACTCCGTGGCAGC
GACTTCACTTTAGCTTGTTGGTAGGGTCGGCATCTCTAAGGGATATCTTC
ACCTCCCCGCGGCCTCGTCCTGTGCTTTTCGATGGCAGACGATGGGAAAA
CTGTCGGAGACCATGTCTTGGTCATCCTCTTCCTGCTTCTTGTGTTGCTC
GTGGGCTGGACATACTGGTTTCGTTCTCGTCCCCGCACATCCGAAGTGGA
CTTCGAGGTGTGTATCGGGATTATTGAGCTGGGCGTGGGAGGGTTAGCCA
GCAAAAAGCGTCTGAATGCCTCAAGCATGTTAGCTTCTGTAGGACTTCAC
ATCACCTTCTGGCTTTGAAAATGGGTGTTTACACATTCAAATTAGTCACT
CATCCAAGTTACATCCCGCATACCATAGAGAGAAGGCGATCAAAAGACGA
GAATAAGACATGAACGAAATATTTAAGCTCCGACCGCACAACGAGACAAA
AGTATTTAACAATGCTGAAATGTGAATCGAAGCAAGGAGAGACGCAGGGG
TGAGAATAGATGGTTTAACAAAGGTGAAGTCCGATGGATCGCAGGGTGAA
ATGGGTGCGTAGGGGAAAATGAAAGGGGGAAAGGGGGGGAGGAGGAAAAA
GAGTGTTCCAAACATACATGCGACATGGACCTTCTCGAAATATTTGTGTG
ATGACGTCGGATTGGAATAAATTGATATATAGGCATTCAATGGCAACCGA
TGTACAATCGAAACAATCCTATAATCACAGAATTGTGCCAAAGGCCGTGC
TTATGGAGGGAGACATGAAAGGATGAGGTGGTTACCAACTCCCTTGGGTT
TTGTCCCCGTTGCATAAGCCGTGAGAGAAGTTGTTGTGCAGCTTGCAGTG
TGTCTTTTTTCATTTTGAGTCTAGGGGTATGGAATATGCATCGACTAGAG
AACGTTGGGTTCCTACTGTCATATTTTTCAACTTCTTTTCCTCTCTCGTC
TTCATAGAACGGTATAAATATGAAAGGACTGGGTTCTTTGAAGACAAATG
TTGAAAAAGAAGGACTTGCAATTTGTCCCTGTGCATCATTTGGTTCTATG
GAAGAGAGCGAATGGAGAGCACGGCAGGACTTCGAATGTTTCTCGAGAGT
ACTCTTTCTCCGTGTCGAAACCCACAGATCCTTCACTCCACACGGCATTC
CCTTCCTTCTTCTTTCACAGGCTGTCATTCACATTTATGGAAACGGCAAT
AAGGATCGAAGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCTTGCGC
TTTACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCGCCCTC
GTCTTGGGGCACGACATTTCGCACCACTGTCCTTCCCTCATGTATGGAGA
GCTGAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGAGTTAG
AAGCCCTACCGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTTCGGGA
ATTGGGAAGCAGATATTCACGGCAGCATGTGTATACGCCTGGAAGCGGTG
CATTGGGGTGGAAATCTATGAGAAACGCGCAAAACTTGCAGAACAGGCAT
TGCAAAGATGGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTACCCGA
GTGGTCGACTTCGCTTGCGATGACATTGTCGAAATCGAGATGGAGGGATT
CCAAGTCATCCTCCTCGTGTCGGCAGCATTTACCGATACGCTGATGCGGA
GCATAGCGAAGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCATATGT
ATCACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAATCTGA
GCGCGAAGAGCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAAAATAC
TTGCGTGATAAATAACGATTTGGCCGTGCGGGTGCTCACAAAGTCGCTTA
ACAAATGCAATAAGTCCCG
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Coding sequence (CDS) from alignment at CM002458.1:307788..310456-

>rna1856 ID=rna1856|Name=rna1856|organism=Nannochloropsis gaditana|type=CDS|length=861bp|location=Sequence derived from alignment at CM002458.1:307788..310456- (Nannochloropsis gaditana)
ATGTTGAAAAAGAAGGACTTGCAATTTGTCCCTGTGCATCATTTGGTTCT
ATGGAAGAGAGCGAATGGAGAGCACGGCAGGACTTCGAATGTTTCTCGAG
AGTACTCTTTCTCCGTGTCGAAACCCACAGATCCTTCACTCCACACGGCA
TTCCCTTCCTTCTTCTTTCACAGGCTGTCATTCACATTTATGGAAACGGC
AATAAGGATCGAAGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCTTG
CGCTTTACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCGCC
CTCGTCTTGGGGCACGACATTTCGCACCACTGTCCTTCCCTCATGTATGG
AGAGCTGAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGAGT
TAGAAGCCCTACCGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTTCG
GGAATTGGGAAGCAGATATTCACGGCAGCATGTGTATACGCCTGGAAGCG
GTGCATTGGGGTGGAAATCTATGAGAAACGCGCAAAACTTGCAGAACAGG
CATTGCAAAGATGGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTACC
CGAGTGGTCGACTTCGCTTGCGATGACATTGTCGAAATCGAGATGGAGGG
ATTCCAAGTCATCCTCCTCGTGTCGGCAGCATTTACCGATACGCTGATGC
GGAGCATAGCGAAGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCATA
TGTATCACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAATC
TGAGCGCGAAGAGCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAAAA
TACTTGCGTGA
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Synonyms
Publications