rna1855, rna1855 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1855
Unique Name	rna1855
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1874
Alignment location	CM002458.1:307788..310456 -

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100002g170.4851.mrna
Orig protein id	gnl\|cribi\|Naga_100002g170.4851
Gbkey	mRNA
Note	encoded by transcript variant 4; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:307788..310456 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100002g170	gene1776	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28732.1	cds1850	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1855	rna1855-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:307788..310456-
coding sequence from alignment at CM002458.1:307788..310456-

mRNA sequence

>rna1855 ID=rna1855|Name=rna1855|organism=Nannochloropsis gaditana|type=mRNA|length=1874bp
CCACATCTTTGACGTAATTGCATGCGCCCCCGAACAAGTGCTGGTACGCC
TACAATCTACATTTACATCCATCTCCTCCGGCTTGTCCCCAAGTCTTTGA
AATCTTTTTCGATCGCTTTCTGACTGCAATGGCTTGCAGTGTATAGGTCC
CAGTACAGAAGAGTCGAAAGGCTCTCCCGGATACACGGTTAGGACTGTTA
TAATGATGAGGCCGATGGCCACGCCAGCCTATTTCAAACATAAGGCGTGT
TTGAGGATAAGGACTGCTAAGGGATGCCATTTTTAAAAAGATGGCTCAGA
AGAGCAAATTTTCTTACCAGTACAAAGCCTAGCAGCTCGTGAGTGCGCGG
ATGTTGCGTGATATACTCGCAGGACGGGAAGTCGAAATTGAAGAGGGGCG
GAACATTACGGGTCATGTTGATAAAGTGAGTCGGCGCTCTTAAAAGAGAG
TGCGCAGGAGCGAACGTGGCTTCGACCGTTGTAGGCGTTCTGTCAGTTCT
TATGTCAATGATGACGGGTATGCCTGTATATAAGAACCAGGCAGGCGAGC
TTTTCATTGGTCAGGTTATACTATTCGTCCTTTCTTTTCGCCTTATGAGC
CGTCGTTCGCCAAGCGAGCGAACGAGCAGCGGCCCTCTCGCCAACCAACG
TGACCTGAAATCCAAAAACCTTACACTTAATGAATAGACACGCTTCGGAC
ACAGGTATCCGAGGAGTGGCTGGCCCGACTTGGGAGGACTCCGTGGCAGC
GACTTCACTTTAGCTTGTTGGTAGGGTCGGCATCTCTAAGGGATATCTTC
ACCTCCCCGCGGCCTCGTCCTGTGCTTTTCGATGGCAGACGATGGGAAAA
CTGTCGGAGACCATGTCTTGGTCATCCTCTTCCTGCTTCTTGTGTTGCTC
GTGGGCTGGACATACTGGTTTCGTTCTCGTCCCCGCACATCCGAAGTGGA
CTTCGAGAGAGAAGGCGATCAAAAGACGAGAATAAGACATGAACGAAATA
TTTAAGCTCCGACCGCACAACGAGACAAAAGTATTTAACAATGCTGAAAT
GTGAATCGAAGCAAGGAGAGACGCAGGGAATTGTGCCAAAGGCCGTGCTT
ATGGAGGGAGACATGAAAGGATGAGGCTGTCATTCACATTTATGGAAACG
GCAATAAGGATCGAAGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCT
TGCGCTTTACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCG
CCCTCGTCTTGGGGCACGACATTTCGCACCACTGTCCTTCCCTCATGTAT
GGAGAGCTGAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGA
GTTAGAAGCCCTACCGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTT
CGGGAATTGGGAAGCAGATATTCACGGCAGCATGTGTATACGCCTGGAAG
CGGTGCATTGGGGTGGAAATCTATGAGAAACGCGCAAAACTTGCAGAACA
GGCATTGCAAAGATGGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTA
CCCGAGTGGTCGACTTCGCTTGCGATGACATTGTCGAAATCGAGATGGAG
GGATTCCAAGTCATCCTCCTCGTGTCGGCAGCATTTACCGATACGCTGAT
GCGGAGCATAGCGAAGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCA
TATGTATCACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAA
TCTGAGCGCGAAGAGCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAA
AATACTTGCGTGATAAATAACGATTTGGCCGTGCGGGTGCTCACAAAGTC
GCTTAACAAATGCAATAAGTCCCG

protein sequence of rna1855

>rna1855-protein ID=rna1855-protein|Name=rna1855|organism=Nannochloropsis gaditana|type=polypeptide|length=286bp
MLKKKDLQFVPVHHLVLWKRANGEHGRTSNVSREYSFSVSKPTDPSLHTA
FPSFFFHRLSFTFMETAIRIEGASRSSKFQDGLALYSRLEPCLYPSLNPA
LVLGHDISHHCPSLMYGELSGETLVKALGLIDELEALPREGEGSLIDIGS
GIGKQIFTAACVYAWKRCIGVEIYEKRAKLAEQALQRWKSKQSSIPMLRT
RVVDFACDDIVEIEMEGFQVILLVSAAFTDTLMRSIAKVLDSQAVGTLAI
CITKALPGPKWEVVHKSEREEPWGRAWLIIQKKILA

mRNA from alignment at CM002458.1:307788..310456-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1855 ID=rna1855|Name=rna1855|organism=Nannochloropsis gaditana|type=mRNA|length=2669bp|location=Sequence derived from alignment at CM002458.1:307788..310456- (Nannochloropsis gaditana)
CCACATCTTTGACGTAATTGCATGCGCCCCCGAACAAGTGCTGGTACGCC
TACAATCTACATTTACATCCATCTCCTCCGGCTTGTCCCCAAGTCTTTGA
AATCTTTTTCGATCGCTTTCTGACTGCAATGGCTTGCAGTGTATAGGTCC
CAGTACAGAAGAGTCGAAAGGCTCTCCCGGATACACGGTTAGGACTGTTA
TAATGATGAGGCCGATGGCCACGCCAGCCTATTTCAAACATAAGGCGTGT
TTGAGGATAAGGACTGCTAAGGGATGCCATTTTTAAAAAGATGGCTCAGA
AGAGCAAATTTTCTTACCAGTACAAAGCCTAGCAGCTCGTGAGTGCGCGG
ATGTTGCGTGATATACTCGCAGGACGGGAAGTCGAAATTGAAGAGGGGCG
GAACATTACGGGTCATGTTGATAAAGTGAGTCGGCGCTCTTAAAAGAGAG
TGCGCAGGAGCGAACGTGGCTTCGACCGTTGTAGGCGTTCTGTCAGTTCT
TATGTCAATGATGACGGGTATGCCTGTATATAAGAACCAGGCAGGCGAGC
TTTTCATTGGTCAGGTTATACTATTCGTCCTTTCTTTTCGCCTTATGAGC
CGTCGTTCGCCAAGCGAGCGAACGAGCAGCGGCCCTCTCGCCAACCAACG
TGACCTGAAATCCAAAAACCTTACACTTAATGAATAGACACGCTTCGGAC
ACAGGTATCCGAGGAGTGGCTGGCCCGACTTGGGAGGACTCCGTGGCAGC
GACTTCACTTTAGCTTGTTGGTAGGGTCGGCATCTCTAAGGGATATCTTC
ACCTCCCCGCGGCCTCGTCCTGTGCTTTTCGATGGCAGACGATGGGAAAA
CTGTCGGAGACCATGTCTTGGTCATCCTCTTCCTGCTTCTTGTGTTGCTC
GTGGGCTGGACATACTGGTTTCGTTCTCGTCCCCGCACATCCGAAGTGGA
CTTCGAGGTGTGTATCGGGATTATTGAGCTGGGCGTGGGAGGGTTAGCCA
GCAAAAAGCGTCTGAATGCCTCAAGCATGTTAGCTTCTGTAGGACTTCAC
ATCACCTTCTGGCTTTGAAAATGGGTGTTTACACATTCAAATTAGTCACT
CATCCAAGTTACATCCCGCATACCATAGAGAGAAGGCGATCAAAAGACGA
GAATAAGACATGAACGAAATATTTAAGCTCCGACCGCACAACGAGACAAA
AGTATTTAACAATGCTGAAATGTGAATCGAAGCAAGGAGAGACGCAGGGG
TGAGAATAGATGGTTTAACAAAGGTGAAGTCCGATGGATCGCAGGGTGAA
ATGGGTGCGTAGGGGAAAATGAAAGGGGGAAAGGGGGGGAGGAGGAAAAA
GAGTGTTCCAAACATACATGCGACATGGACCTTCTCGAAATATTTGTGTG
ATGACGTCGGATTGGAATAAATTGATATATAGGCATTCAATGGCAACCGA
TGTACAATCGAAACAATCCTATAATCACAGAATTGTGCCAAAGGCCGTGC
TTATGGAGGGAGACATGAAAGGATGAGGTGGTTACCAACTCCCTTGGGTT
TTGTCCCCGTTGCATAAGCCGTGAGAGAAGTTGTTGTGCAGCTTGCAGTG
TGTCTTTTTTCATTTTGAGTCTAGGGGTATGGAATATGCATCGACTAGAG
AACGTTGGGTTCCTACTGTCATATTTTTCAACTTCTTTTCCTCTCTCGTC
TTCATAGAACGGTATAAATATGAAAGGACTGGGTTCTTTGAAGACAAATG
TTGAAAAAGAAGGACTTGCAATTTGTCCCTGTGCATCATTTGGTTCTATG
GAAGAGAGCGAATGGAGAGCACGGCAGGACTTCGAATGTTTCTCGAGAGT
ACTCTTTCTCCGTGTCGAAACCCACAGATCCTTCACTCCACACGGCATTC
CCTTCCTTCTTCTTTCACAGGCTGTCATTCACATTTATGGAAACGGCAAT
AAGGATCGAAGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCTTGCGC
TTTACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCGCCCTC
GTCTTGGGGCACGACATTTCGCACCACTGTCCTTCCCTCATGTATGGAGA
GCTGAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGAGTTAG
AAGCCCTACCGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTTCGGGA
ATTGGGAAGCAGATATTCACGGCAGCATGTGTATACGCCTGGAAGCGGTG
CATTGGGGTGGAAATCTATGAGAAACGCGCAAAACTTGCAGAACAGGCAT
TGCAAAGATGGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTACCCGA
GTGGTCGACTTCGCTTGCGATGACATTGTCGAAATCGAGATGGAGGGATT
CCAAGTCATCCTCCTCGTGTCGGCAGCATTTACCGATACGCTGATGCGGA
GCATAGCGAAGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCATATGT
ATCACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAATCTGA
GCGCGAAGAGCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAAAATAC
TTGCGTGATAAATAACGATTTGGCCGTGCGGGTGCTCACAAAGTCGCTTA
ACAAATGCAATAAGTCCCG

Coding sequence (CDS) from alignment at CM002458.1:307788..310456-

>rna1855 ID=rna1855|Name=rna1855|organism=Nannochloropsis gaditana|type=CDS|length=861bp|location=Sequence derived from alignment at CM002458.1:307788..310456- (Nannochloropsis gaditana)
ATGTTGAAAAAGAAGGACTTGCAATTTGTCCCTGTGCATCATTTGGTTCT
ATGGAAGAGAGCGAATGGAGAGCACGGCAGGACTTCGAATGTTTCTCGAG
AGTACTCTTTCTCCGTGTCGAAACCCACAGATCCTTCACTCCACACGGCA
TTCCCTTCCTTCTTCTTTCACAGGCTGTCATTCACATTTATGGAAACGGC
AATAAGGATCGAAGGAGCGTCTAGGTCTTCAAAATTTCAAGATGGGCTTG
CGCTTTACTCCCGCCTCGAGCCTTGTCTCTACCCCTCTTTGAACCCCGCC
CTCGTCTTGGGGCACGACATTTCGCACCACTGTCCTTCCCTCATGTATGG
AGAGCTGAGCGGAGAGACTCTGGTAAAAGCCTTAGGCCTGATTGATGAGT
TAGAAGCCCTACCGAGAGAGGGGGAAGGCTCGCTTATTGACATTGGTTCG
GGAATTGGGAAGCAGATATTCACGGCAGCATGTGTATACGCCTGGAAGCG
GTGCATTGGGGTGGAAATCTATGAGAAACGCGCAAAACTTGCAGAACAGG
CATTGCAAAGATGGAAAAGTAAACAGAGTAGTATACCCATGCTGCGTACC
CGAGTGGTCGACTTCGCTTGCGATGACATTGTCGAAATCGAGATGGAGGG
ATTCCAAGTCATCCTCCTCGTGTCGGCAGCATTTACCGATACGCTGATGC
GGAGCATAGCGAAGGTTCTGGATTCACAAGCGGTCGGGACTTTGGCCATA
TGTATCACAAAAGCTCTCCCTGGGCCAAAGTGGGAAGTGGTGCACAAATC
TGAGCGCGAAGAGCCCTGGGGACGGGCATGGTTAATTATTCAAAAGAAAA
TACTTGCGTGA

Synonyms

Publications