rna1844, rna1844 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1844
Unique Name	rna1844
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1668
Alignment location	CM002458.1:281061..283258 +

Link to JBrowse

Properties


Property Name	Value
Product	epimerase 4-reductase
Orig transcript id	gnl\|cribi\|Naga_100199g4.9700.mrna
Orig protein id	gnl\|cribi\|Naga_100199g4.9700
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:281061..283258 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100199g4	gene1768	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1844	rna1844-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28830.1	cds1839	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:281061..283258+
coding sequence from alignment at CM002458.1:281061..283258+

mRNA sequence

>rna1844 ID=rna1844|Name=rna1844|organism=Nannochloropsis gaditana|type=mRNA|length=1668bp
TGCGGCCCCTCCTCCAACTGTGGCTTAGACCCCAGACATGTGCTGTCATC
GCATCGTGTTGGTTGACATAGGAACCGTCCGTGGGTGTGACTTTTTAGGG
CTGTTGTGTTTTTTTGGGGCGGGTGTTTATTTGACGAAGGGCGGAAGCGG
CGGAGGGGCCGGTGGCTCATGCAGTGGCCTTGCGCTCCCCTACTCTCTTA
AGCGTGACCGCAGAAAGACCGCGCGTCTTCGCGTCGTCGGGACTGGTCCG
TCTCCAACTGTGCGTGTTATATTCTCGCGGTCCTGCCGTGGTTGACTTCG
TTGTAGGGAGAGATTTCCACTTGCATGTGTTTTGTCGGCCTCGCATCTAG
CTAGGGCGATTCTCATGCGTTCTCATCCCTTCCCAAAATGCTCATTGACC
AGACTCCTCTTGGATTTCCTCCCTAATTTTCATTTTTTGTCCAATTCACT
TGAAAATAGGCTTGGGATCGCGCTAGTTGCTCTGGAAGACGGGCACACCA
GGGGGACGGCGGAAGGAAGTTAGCTCTCAAGCCGACCCCAGTATGACGGG
ACCTATTCTCAGTGCTTTTGGAGCCGCCGCCCGGGCTGCGGGAAGGGCCT
TTGAAAACGCGGGCAAGCTTTTGGAAGTGGCTCCCTACGTAGAACATCTG
GCACCCTCCACCAAGGTATTGTCCTTCGGAGGTAAGGCACCCGCCATCCA
TGAAACAGCCTTCGTCGCCCCCAGCGCCAGCATCATCGGGAACGTGCAAG
TGGGTAAAGGCGCTTCAGTCTGGTACGGGGCTACGCTGCGCGGAGACGTC
CAGAGCATCACGGTAGGAGAGCAAACGACGATTGGAGACAGGGCAGTGGT
GCACGTAGCCAAGCTGAAAGGAGACGCTCCTACTAAAATTGGGAATCGGG
TGACAGTTGGGCCCCGCGCGGTCATCCACGCTTGCACCCTGGAGGACGAA
TCGACGGTAGGAGCTGGGGCGCAAGTCCTTGACAAGGCAGTGGTCAAGAG
CCATGCCGCGTTGGCGCCTGGGGCAGTCTTAACTCCTGGAAAAACAGTCC
CCTCCGGACACCTGTGGGCGGGTGTGCCTGCCAAATTCGTGCGGGAGCTC
ACGGCGGAAGAAATAGCAAACATCAAGCGGGAAGCCGTGGCATCCTTCGA
GCTGGCCACCGTACACAAGGCGGAGACCAGCAAAGACTACGTGCAGGTGG
AGGCGGACGAGGAGGCGTGGATAGACAAGAAACAACGGTCACCGAACTAC
TGGCCACGGCTCAAGGACCCAAAGGACCCCGCAGAGATACCCGGATTTGG
CGTGCCTGGTCGCATCTTCAATCACCCTTTGACTGTACCGTTGCCGGAGG
GCTCGGATCGTTCGGGCGCGTCGAAGTGAGGTGCGGGAGGAGCGCATAGG
ATGGGAAGAGGGTGGAGAAGGATGCGTGGTGGGACGGACCTGTCTAGGAA
ACGGGCCTGCACCCAGAGCGTGCACTTTGGACAGTGGGTTATAGAACGGA
GACACAGGCCCCCATGTGTGGGGTATTTGATGGCGTGCGTACGTGCGATT
GACGGGAAAGACCTGCCTGGAAGTGATCCTTGTGGTGCTCCGGGTCCTGG
GGGTGAATGACAAGCTGGATTCGCCACGTCGTGAATGCAAGAGTGACTCT
TCATACCTCTCCTTTCTA

protein sequence of rna1844

>rna1844-protein ID=rna1844-protein|Name=rna1844|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MAEEKYLIFGKNGWIGGKLIELLQAQGKTVVLAQTRLENRESLFAELDAV
KPTHVLDAAGVTGRPNIDWCETHQVETIRTNVIGTLNLAEACHLKGIHMT
LYATGCIFEYDEKHPIGGPGFTEEDSPNFFGSFYSKTKAYMEDMLKSYNN
VCILRVRMPISDDLNSRNFVTKIVKYDKVVNVPNSMTVLTDLLPISLLMA
ARKLTGIYNFTNPGAISHNQILALYKKHVDPSYTWENFTIDEQNKILAAK
RSNNELDTTKFCAALPDVHIPDIHEACEKVFQRMKVNLEAEGIWPDKLPK
RTNRLAPPSS

mRNA from alignment at CM002458.1:281061..283258+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1844 ID=rna1844|Name=rna1844|organism=Nannochloropsis gaditana|type=mRNA|length=2198bp|location=Sequence derived from alignment at CM002458.1:281061..283258+ (Nannochloropsis gaditana)
CGGCCAGAGATACTGACAGCGCATACTTACGTTGGTCTAGCGTGGATACA
GCGATGATCATGTCAGGGCGCAGAATTCTCATTAACATGCGATCAATTGT
CTTGATTCGAACAGGTCACATCCCTCAGCGAATACTCGGGTGCAGCCGAT
AAGTCATCATGGCGGAAGAGGTAGGTGCCTGTTTAATGGAATGACGAGGC
CATGCTCCTCTTGatcatggccttcctcccggtgACTCGTTCGGACTCTG
ATGTCTTTTCCCCACCGGCACTCACTCGTCCCAACAGAAGTATCTGATTT
TCGGCAAGAATGGATGGATCGGAGGGAAGCTTATTGAGCTTCTGCAGGCG
CAAGGCAAGACAGTGGTGTTGGCTCAGACACGACTGGAGAATCGGGAGTC
GTTGTTTGCAGAGCTGGACGCTGTGAAGCCGACACACGTCTTGGATGCAG
CAGGCGTGACGGGTCGCCCCAACATTGATTGGTGTGAGACTCACCAGGTG
GAGACGATCCGCACGAACGTTATTGGGACGTTGAATCTGGCGGAGGCGTG
TCACTTGAAAGGGATCCACATGACGTTGTACGCGACGGGATGCATCTTCG
AGTACGACGAGAAGCACCCTATAGGGGGGCCCGGCttcacggaggaggac
tcgCCCAACTTCTTCGGGTCGTTCTACAGCAAGACCAAGGCATACATGGA
AGACATGCTGAAGAGCTACAATAACGTGTGCATCCTCCGTGTCCGTATGC
CCATTTCCGACGATTTGAACTCCAGGAATTTTGTCACCAAGATCGTCAAG
TACGACAAGGTCGTGAACGTGCCGAACTCGATGACGGTCTTGacggacct
cctccccatctccttgCTCATGGCCGCGCGGAAGTTGACGGGTGCGCGTT
CGCTTttcagggagggagtgagggagggaagagaggcaggcggggcgggg
cgaCACATCGGTATCCCTCAGTCTCCCCTTGCCTGTGCGCGGGAAGCACA
cagggcctccacgcccttcccttctcatccccccGTCTACCGTCTCTTTG
TCCTTGCCCACTCCCCAGGCATCTACAACTTCACCAATCCCGGCGCCATT
TCCCACAACCAAATTCTCGCCTTGTACAAGAAGCACGTGGACCCCTCCTA
CACGTGGGAGAACTTCACGGTGCGcatcgccccttcctctcctccctccc
ctctacTTTCTTGTTCTCCAATTCACGCAGCGTACCTGTTTATCACCTGC
CTCGCTTTTGGTGGAGCTCCTCATaggcccctcttccctcccttcccctc
cttccctccctccctccctccctccctactcTTACCAGATCGATGAGCAG
AACAAGATCTTGGCAGCCAAGCGATCCAACAACGAGCTGGATACCACCAA
ATTCTGCGCCGCATTGCCGGACGTGCACATTCCCGACATCCACGAGGCCT
gcgagaaggcgaggagggagggaaggagggagggagggagggagggaagg
agggcacaGAGAGCCGAGAAAAAGAacgtgggaaagagggggaagaagag
caaagggGTGAGAGGGCTCTTGCCTCAAAATGTTCGAAGTTTGAGGCTTC
CATGACGCACCTCGCTCACCCCCtaaccccctccctccctccccccttcc
ctctctccctccttcccaacccCAGGTCTTCCAGCGCATGAAGGTCAACC
TGGAAGCGGAGGGTATCTGGCCCGACAAGCTCCCGAAGCGCACCAACCGC
CTtgcgcccccgtcctcttgaACTCGTATTCTATGTTCTTGAAGTTGTAT
CTTCACCTCCAAGCTTCGTGCTTCCTTCCACGATCTTGTGGGGTTAAATG
CCAGAGAGCAGAATTGAATAATCGGTGCAATCGTCGCGCTTCGACGAGCT
GTATGTACGCTAGGCGGGAGATGTTAACTACAACGGGATGGGAGGCacag
gccgggggggggggcggaggtggagtgTGTGATAGAGCGGTCGAGACTAT
GACTCAGACATGAAAAGGCACGAATGGGATCGGAGAAAGTCCAAGTTAAC
AGCTTGCGATACTTAGTACGTCAATGGttgaaagaaaaagacagcCCCGA
AAAAGGAAAATCAGCTTGATCACGGGGCGCGGGGGCCAAAAAGACGAGGC
ATTTTCATTTTAAAACCCATGCCAGGGCCCGATATTGGGGGCGTCCCG

Coding sequence (CDS) from alignment at CM002458.1:281061..283258+

>rna1844 ID=rna1844|Name=rna1844|organism=Nannochloropsis gaditana|type=CDS|length=4665bp|location=Sequence derived from alignment at CM002458.1:281061..283258+ (Nannochloropsis gaditana)
ATGGCGGAAGAGAAGTATCTGATTTTCGGCAAGAATGGATGGATCGGAGG
GAAGCTTATTGAGCTTCTGCAGGCGCAAGGCAAGACAGTGGTGTTGGCTC
AGACACGACTGGAGAATCGGGAGTCGTTGTTTGCAGAGCTGGACGCTGTG
AAGCCGACACACGTCTTGGATGCAGCAGGCGTGACGGGTCGCCCCAACAT
TGATTGGTGTGAGACTCACCAGGTGGAGACGATCCGCACGAACGTTATTG
GGACGTTGAATCTGGCGGAGGCGTGTCACTTGAAAGGGATCCACATGACG
TTGTACGCGACGGGATGCATCTTCGAGTACGACGAGAAGCACCCTATAGG
GGGGCCCGGCttcacggaggaggactcgCCCAACTTCTTCGGGTCGTTCT
ACAGCAAGACCAAGGCATACATGGAAGACATGCTGAAGAGCTACAATAAC
GTGTGCATCCTCCGTGTCCGTATGCCCATTTCCGACGATTTGAACTCCAG
GAATTTTGTCACCAAGATCGTCAAGTACGACAAGGTCGTGAACGTGCCGA
ACTCGATGACGGTCTTGacggacctcctccccatctccttgCTCATGGCC
GCGCGGAAGTTGACGGGCATCTACAACTTCACCAATCCCGGCGCCATTTC
CCACAACCAAATTCTCGCCTTGTACAAGAAGCACGTGGACCCCTCCTACA
CGTGGGAGAACTTCACGATCGATGAGCAGAACAAGATCTTGGCAGCCAAG
CGATCCAACAACGAGCTGGATACCACCAAATTCTGCGCCGCATTGCCGGA
CGTGCACATTCCCGACATCCACGAGGCCTgcgagaagGTCTTCCAGCGCA
TGAAGGTCAACCTGGAAGCGGAGGGTATCTGGCCCGACAAGCTCCCGAAG
CGCACCAACCGCCTtgcgcccccgtcctcttgaATGGCGGAAGAGAAGTA
TCTGATTTTCGGCAAGAATGGATGGATCGGAGGGAAGCTTATTGAGCTTC
TGCAGGCGCAAGGCAAGACAGTGGTGTTGGCTCAGACACGACTGGAGAAT
CGGGAGTCGTTGTTTGCAGAGCTGGACGCTGTGAAGCCGACACACGTCTT
GGATGCAGCAGGCGTGACGGGTCGCCCCAACATTGATTGGTGTGAGACTC
ACCAGGTGGAGACGATCCGCACGAACGTTATTGGGACGTTGAATCTGGCG
GAGGCGTGTCACTTGAAAGGGATCCACATGACGTTGTACGCGACGGGATG
CATCTTCGAGTACGACGAGAAGCACCCTATAGGGGGGCCCGGCttcacgg
aggaggactcgCCCAACTTCTTCGGGTCGTTCTACAGCAAGACCAAGGCA
TACATGGAAGACATGCTGAAGAGCTACAATAACGTGTGCATCCTCCGTGT
CCGTATGCCCATTTCCGACGATTTGAACTCCAGGAATTTTGTCACCAAGA
TCGTCAAGTACGACAAGGTCGTGAACGTGCCGAACTCGATGACGGTCTTG
acggacctcctccccatctccttgCTCATGGCCGCGCGGAAGTTGACGGG
CATCTACAACTTCACCAATCCCGGCGCCATTTCCCACAACCAAATTCTCG
CCTTGTACAAGAAGCACGTGGACCCCTCCTACACGTGGGAGAACTTCACG
ATCGATGAGCAGAACAAGATCTTGGCAGCCAAGCGATCCAACAACGAGCT
GGATACCACCAAATTCTGCGCCGCATTGCCGGACGTGCACATTCCCGACA
TCCACGAGGCCTgcgagaagGTCTTCCAGCGCATGAAGGTCAACCTGGAA
GCGGAGGGTATCTGGCCCGACAAGCTCCCGAAGCGCACCAACCGCCTtgc
gcccccgtcctcttgaATGGCGGAAGAGAAGTATCTGATTTTCGGCAAGA
ATGGATGGATCGGAGGGAAGCTTATTGAGCTTCTGCAGGCGCAAGGCAAG
ACAGTGGTGTTGGCTCAGACACGACTGGAGAATCGGGAGTCGTTGTTTGC
AGAGCTGGACGCTGTGAAGCCGACACACGTCTTGGATGCAGCAGGCGTGA
CGGGTCGCCCCAACATTGATTGGTGTGAGACTCACCAGGTGGAGACGATC
CGCACGAACGTTATTGGGACGTTGAATCTGGCGGAGGCGTGTCACTTGAA
AGGGATCCACATGACGTTGTACGCGACGGGATGCATCTTCGAGTACGACG
AGAAGCACCCTATAGGGGGGCCCGGCttcacggaggaggactcgCCCAAC
TTCTTCGGGTCGTTCTACAGCAAGACCAAGGCATACATGGAAGACATGCT
GAAGAGCTACAATAACGTGTGCATCCTCCGTGTCCGTATGCCCATTTCCG
ACGATTTGAACTCCAGGAATTTTGTCACCAAGATCGTCAAGTACGACAAG
GTCGTGAACGTGCCGAACTCGATGACGGTCTTGacggacctcctccccat
ctccttgCTCATGGCCGCGCGGAAGTTGACGGGCATCTACAACTTCACCA
ATCCCGGCGCCATTTCCCACAACCAAATTCTCGCCTTGTACAAGAAGCAC
GTGGACCCCTCCTACACGTGGGAGAACTTCACGATCGATGAGCAGAACAA
GATCTTGGCAGCCAAGCGATCCAACAACGAGCTGGATACCACCAAATTCT
GCGCCGCATTGCCGGACGTGCACATTCCCGACATCCACGAGGCCTgcgag
aagGTCTTCCAGCGCATGAAGGTCAACCTGGAAGCGGAGGGTATCTGGCC
CGACAAGCTCCCGAAGCGCACCAACCGCCTtgcgcccccgtcctcttgaA
TGGCGGAAGAGAAGTATCTGATTTTCGGCAAGAATGGATGGATCGGAGGG
AAGCTTATTGAGCTTCTGCAGGCGCAAGGCAAGACAGTGGTGTTGGCTCA
GACACGACTGGAGAATCGGGAGTCGTTGTTTGCAGAGCTGGACGCTGTGA
AGCCGACACACGTCTTGGATGCAGCAGGCGTGACGGGTCGCCCCAACATT
GATTGGTGTGAGACTCACCAGGTGGAGACGATCCGCACGAACGTTATTGG
GACGTTGAATCTGGCGGAGGCGTGTCACTTGAAAGGGATCCACATGACGT
TGTACGCGACGGGATGCATCTTCGAGTACGACGAGAAGCACCCTATAGGG
GGGCCCGGCttcacggaggaggactcgCCCAACTTCTTCGGGTCGTTCTA
CAGCAAGACCAAGGCATACATGGAAGACATGCTGAAGAGCTACAATAACG
TGTGCATCCTCCGTGTCCGTATGCCCATTTCCGACGATTTGAACTCCAGG
AATTTTGTCACCAAGATCGTCAAGTACGACAAGGTCGTGAACGTGCCGAA
CTCGATGACGGTCTTGacggacctcctccccatctccttgCTCATGGCCG
CGCGGAAGTTGACGGGCATCTACAACTTCACCAATCCCGGCGCCATTTCC
CACAACCAAATTCTCGCCTTGTACAAGAAGCACGTGGACCCCTCCTACAC
GTGGGAGAACTTCACGATCGATGAGCAGAACAAGATCTTGGCAGCCAAGC
GATCCAACAACGAGCTGGATACCACCAAATTCTGCGCCGCATTGCCGGAC
GTGCACATTCCCGACATCCACGAGGCCTgcgagaagGTCTTCCAGCGCAT
GAAGGTCAACCTGGAAGCGGAGGGTATCTGGCCCGACAAGCTCCCGAAGC
GCACCAACCGCCTtgcgcccccgtcctcttgaATGGCGGAAGAGAAGTAT
CTGATTTTCGGCAAGAATGGATGGATCGGAGGGAAGCTTATTGAGCTTCT
GCAGGCGCAAGGCAAGACAGTGGTGTTGGCTCAGACACGACTGGAGAATC
GGGAGTCGTTGTTTGCAGAGCTGGACGCTGTGAAGCCGACACACGTCTTG
GATGCAGCAGGCGTGACGGGTCGCCCCAACATTGATTGGTGTGAGACTCA
CCAGGTGGAGACGATCCGCACGAACGTTATTGGGACGTTGAATCTGGCGG
AGGCGTGTCACTTGAAAGGGATCCACATGACGTTGTACGCGACGGGATGC
ATCTTCGAGTACGACGAGAAGCACCCTATAGGGGGGCCCGGCttcacgga
ggaggactcgCCCAACTTCTTCGGGTCGTTCTACAGCAAGACCAAGGCAT
ACATGGAAGACATGCTGAAGAGCTACAATAACGTGTGCATCCTCCGTGTC
CGTATGCCCATTTCCGACGATTTGAACTCCAGGAATTTTGTCACCAAGAT
CGTCAAGTACGACAAGGTCGTGAACGTGCCGAACTCGATGACGGTCTTGa
cggacctcctccccatctccttgCTCATGGCCGCGCGGAAGTTGACGGGC
ATCTACAACTTCACCAATCCCGGCGCCATTTCCCACAACCAAATTCTCGC
CTTGTACAAGAAGCACGTGGACCCCTCCTACACGTGGGAGAACTTCACGA
TCGATGAGCAGAACAAGATCTTGGCAGCCAAGCGATCCAACAACGAGCTG
GATACCACCAAATTCTGCGCCGCATTGCCGGACGTGCACATTCCCGACAT
CCACGAGGCCTgcgagaagGTCTTCCAGCGCATGAAGGTCAACCTGGAAG
CGGAGGGTATCTGGCCCGACAAGCTCCCGAAGCGCACCAACCGCCTtgcg
cccccgtcctcttga

Synonyms

Publications