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Properties
| Property Name | Value |
|---|
| Product | protein phosphatase 2c |
| Orig transcript id | gnl|cribi|Naga_100199g8.9702.mrna |
| Orig protein id | gnl|cribi|Naga_100199g8.9702 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:267640..269683 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1839 ID=rna1839|Name=rna1839|organism=Nannochloropsis gaditana|type=mRNA|length=1191bp
ATGCCACGGACAAGTCCATACCGTACTCGTGGCGGTCGCGTCGTCAAAAG
CACTGCCAACGTCAGTAGCGGCGACGGCAGCATCACCTCGACGACCAAGC
CTCGTGCCAGCAGCCGGCGTGCGACCATTGCCGGCCCCCTTGCCTCGCCT
GTCACCAAGAGAAGCCCTGCGCCCTCCACTCCCACGTATGAGAGTCCAAG
CACCAGCAAAAAGCAAAGCAGCGCGCGTAAAAGTGCGGGTGGAAGTCGCA
GCAAGGGAAGCGTGAGCAAATGGGCCGTCCTTTTTTACGCTCCGAACGTG
ATCGGCTATGTCCGTGTGGCCGTTACCCTCTATGCCTTCTACCTCGGTGT
GCAGCGTAAGAGCGACTGGAGGTCTGTGGTGAGCCTGTACTTCCTCGCGT
TTGCTTTGGATGCAGTGGACGGCTACGTGGCGCGCATGTGCGGCCAAGAA
AGTGGTTTCGGGGGCGTGCTGGACATGGTCACGGATCGAACCGCTACCGC
TGGTTTGGTCATGTTGAACTTGGTAGTAGAGGGAGATGAGCTCCGGAAAT
TCGGGTGGATATGCCTGTGTATGCTGGATATTGGCTCGCACTGGTTCCAT
TGCGTGGCTGCCGCGGGTGCTCATCACAAGTCGGAGGAGGCGACCGCCGG
GAAGAACGCAGTCTTGCGCTGGTACTACGCGTGCAAGCCTCTCTTCTTCG
CCTGCTGTCTGGGTCAAGAGGCCTTTTACCTGATCAACTACATCCAGAGA
AAAGGAGGGAAGTTCGGGGGGATCGCCATGCCCTCGTGGGTGCCGAGGGA
AGTGGAAGAGCTTCTCCCCACCACAGTGGAGGGCTGGCTCGCGTCGATCA
CCCTGGTCTTTGCCACCATCAAGCAGGTCGTCAACGTCGTTCAGCTGGCC
TCTGCAGCTGTGACACTGGCGGAAGCAGATGCACAAAAGAAGAAGCTGAA
GGCGAATACAACCGAAGGACAAACAAGACGGCAGAATGTAAAACAGCACC
ATTGGAAACACAACCCTATGGTTTACATAGAAGCTCAATTGATGGAGAGA
AAGAGATTATCAAATCGAGGTAACGGATATTTAAAGCGACTGAGTGACCG
TTACGAAGGATATTTTCTACACACAGGCGCTTTCATCCGCCGGATTTTTT
CAATACAGAACAGTTCAATTAAACTGAAAATCACGTGTTAA back to topprotein sequence of rna1839 >rna1839-protein ID=rna1839-protein|Name=rna1839|organism=Nannochloropsis gaditana|type=polypeptide|length=376bp
MGAHQGSPSLSASTIPDAPSLPFGSHVLGLLLCFAILYVALRILFTLVHS
LFLRSNPAMPGAPTVPRLSGGWRSWYLAGACGAKASPLSSTAGHPVPYSS
SPTDVERQPNQVHLPCSHWAETGGRQYMEDRLSFRGRLGGREDASLYACF
DGHGGALASEFCAQELPGYLVESEKNWEMATKSALKDAFAQTDAAFAQAL
AGTDRLDGTTALVSVVVGDKLFVANAGDSRAILVQRGARVVPLSRDHKPS
LPDELERITGLGGKVIFWGRWRVEGVLAVSRAIGDAHLKPYVTPEPEVTE
WEITEKDHFLVVASDGLWDVLSNEMAAQIVTNHGQNLEQAAKRLCREASM
NGSMDNISAIVVDLREVRRRRRDRER back to topmRNA from alignment at CM002458.1:267640..269683+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1839 ID=rna1839|Name=rna1839|organism=Nannochloropsis gaditana|type=mRNA|length=2044bp|location=Sequence derived from alignment at CM002458.1:267640..269683+ (Nannochloropsis gaditana)
AGAGACAAGCCTGAAGCCAACCTCAACAAGCACCCCCCTGGGCCATGCAA
GGATGGTAATGGACCGAGACGGACACGCGTGCTTACACGTACGCTTCTAA
TCATGGACAGGGCTACAGGATAGCGAGCATGGGTTCTGTTCCTGCAATCA
ATCTGATCGCGTGGACGTGATTAGCCAGAGAGGATCTCTCTGCGGAAGGC
AGATTTTTAGGTAAGCTCAGGAAGGTGAAGTTGCGTCTGGCAGGGTTAGG
CTCCGGAAGACCATGATAAATCATCCAAACAGGCAACGGTGCTTTTCTGC
ACGCACCAACagttttccccttcttcttcgggGGGCAAATTACTTTTTAC
AAGGGTCGTGCGGGATTTTAATCCCATCCTAGCGCAGATTCTCTTACATC
TCAACCACAAATTCATCCACTCTAGGAGTATGGGGGCGCACCAGggatct
ccctccctctccgcgtcTACAATACCAGACGCGCCCTCACTTCCGTTCGG
ATCGCACGTCTTGGGCTTGCTCCTATGCTTTGCCATTCTCTACGTCGCCT
TacgcatcctcttcaccctGGTgcattccctcttcctccgatcCAATCCC
GCCATGCCTGGCGCACCGACCGTTCCTCGCCTGAGCGGGGGCTGGCGAAG
CTGGTACTTGGCGGGTGCATGCGGGGCAAAAGCGAGCCCGCTGTCCTCCA
CTGCCGGGCATCCGGTCCCGTACTCCTCAAGCCCGACGGATGTGGAAAGA
CAACCCAATCAAGTGcacctcccttgctcccatTGGGCCGAAACCGGGGG
CCGCCAGTACATGGAGGACCGGCTCAGCTTCCGAGGCCGCTtgggcggca
gggaggatgcgaGCTTGTACGCTTGTTTCGATGGCCACGGGGGGGCACTT
GCCAGTGAATTCTGCGCCCAGGAATTACCGGGCTACCTGGTGGAAAGCGA
AAAAAATTGGGAAATGGCAACGAAATCAGCCTTAAAAGATGCGTTCGCAC
AAACCGATGCCGCTTTCGCGCAGGCTCTGGCAGGAACGGATCGATTGGAT
GGAACAACCGCGCTGGTCTCTGTCGTGGTAGGCGACAAGCTCTTTGTGGC
CAACGCAGGCGACTCCCGGGCCATACTCGTCCAGCGCGGCGCACGGGTGG
TGCCATTGTCCCGAGACCACAAGCCGTCCTTGCCGGACGAGCTGGAGCGG
ATTacggggctgggagggaaggtgatcTTTTGGGGTCGAtggcgggtgga
gggagtCCTGGCTGTCTCCAGGGCGATAGGGGACGCGCATTTGAAGCCGT
ACGTGACGCCGGAGCCGGAGGTAACGGAGTGGGAGATCACTGAGAAGGAC
CACTTCCTAGTCGTGGCGAGCGATGGTGCGTGCTTTGGTGGGGTGGGGTg
tggggcaggggagaggggttTGTGGCCGTGGGGCAGGGGGACGCTTTCCC
TTAGTCATGCATGCGAGGGTCGAAGGTAAGCTGATGTGCAGGTAGGCCTG
TGAAATACACATGCTTGTGAAGCGCGTCcggagaaagcggcggcgTCATG
CGCTTCAGAGACGTGGCTGAGACTGACACATTCCCCCCTGAACAGGTTTA
TGGGATGTGCTCTCCAACGAGATGGCGGCGCAAATCGTCACCAACCACGG
ACAAAACCTCGAGCAGGCAGCGAAAAGGCTCTGCCGTGAGGCCTCTATGA
ACGGGTCGATGGATAATATCAGTGCGATTGTGGTAGACCTGCGGGAGGTT
CGGAGAAGACGCAGGGACAGGGAAAGGTAGGCGGGCCGTGCAGTCACGAA
GGGGGAAGCTACATGtcggtcgaggaggacgatagGTAGAGGGCCGTGTG
TAAAGCTGTGTACAGGCTGAGTAGAGGAGAGGTCAAGACTGAATGACGAc
gaaaggggaggatggggaggaaagggaggtggttTGGAGGAGAATTTTGA
TTTATGCTATCTCTGCTTCCCAGGACAGAGACCACGGGGTCGTGTGCTCT
TGAACCTGAAAGAACAAATTGTGCCCATGGGCTGAGGATGCTCC back to topCoding sequence (CDS) from alignment at CM002458.1:267640..269683+ >rna1839 ID=rna1839|Name=rna1839|organism=Nannochloropsis gaditana|type=CDS|length=2262bp|location=Sequence derived from alignment at CM002458.1:267640..269683+ (Nannochloropsis gaditana)
ATGGGGGCGCACCAGggatctccctccctctccgcgtcTACAATACCAGA
CGCGCCCTCACTTCCGTTCGGATCGCACGTCTTGGGCTTGCTCCTATGCT
TTGCCATTCTCTACGTCGCCTTacgcatcctcttcaccctGGTgcattcc
ctcttcctccgatcCAATCCCGCCATGCCTGGCGCACCGACCGTTCCTCG
CCTGAGCGGGGGCTGGCGAAGCTGGTACTTGGCGGGTGCATGCGGGGCAA
AAGCGAGCCCGCTGTCCTCCACTGCCGGGCATCCGGTCCCGTACTCCTCA
AGCCCGACGGATGTGGAAAGACAACCCAATCAAGTGcacctcccttgctc
ccatTGGGCCGAAACCGGGGGCCGCCAGTACATGGAGGACCGGCTCAGCT
TCCGAGGCCGCTtgggcggcagggaggatgcgaGCTTGTACGCTTGTTTC
GATGGCCACGGGGGGGCACTTGCCAGTGAATTCTGCGCCCAGGAATTACC
GGGCTACCTGGTGGAAAGCGAAAAAAATTGGGAAATGGCAACGAAATCAG
CCTTAAAAGATGCGTTCGCACAAACCGATGCCGCTTTCGCGCAGGCTCTG
GCAGGAACGGATCGATTGGATGGAACAACCGCGCTGGTCTCTGTCGTGGT
AGGCGACAAGCTCTTTGTGGCCAACGCAGGCGACTCCCGGGCCATACTCG
TCCAGCGCGGCGCACGGGTGGTGCCATTGTCCCGAGACCACAAGCCGTCC
TTGCCGGACGAGCTGGAGCGGATTacggggctgggagggaaggtgatcTT
TTGGGGTCGAtggcgggtggagggagtCCTGGCTGTCTCCAGGGCGATAG
GGGACGCGCATTTGAAGCCGTACGTGACGCCGGAGCCGGAGGTAACGGAG
TGGGAGATCACTGAGAAGGACCACTTCCTAGTCGTGGCGAGCGATGGTTT
ATGGGATGTGCTCTCCAACGAGATGGCGGCGCAAATCGTCACCAACCACG
GACAAAACCTCGAGCAGGCAGCGAAAAGGCTCTGCCGTGAGGCCTCTATG
AACGGGTCGATGGATAATATCAGTGCGATTGTGGTAGACCTGCGGGAGGT
TCGGAGAAGACGCAGGGACAGGGAAAGGTAGATGGGGGCGCACCAGggat
ctccctccctctccgcgtcTACAATACCAGACGCGCCCTCACTTCCGTTC
GGATCGCACGTCTTGGGCTTGCTCCTATGCTTTGCCATTCTCTACGTCGC
CTTacgcatcctcttcaccctGGTgcattccctcttcctccgatcCAATC
CCGCCATGCCTGGCGCACCGACCGTTCCTCGCCTGAGCGGGGGCTGGCGA
AGCTGGTACTTGGCGGGTGCATGCGGGGCAAAAGCGAGCCCGCTGTCCTC
CACTGCCGGGCATCCGGTCCCGTACTCCTCAAGCCCGACGGATGTGGAAA
GACAACCCAATCAAGTGcacctcccttgctcccatTGGGCCGAAACCGGG
GGCCGCCAGTACATGGAGGACCGGCTCAGCTTCCGAGGCCGCTtgggcgg
cagggaggatgcgaGCTTGTACGCTTGTTTCGATGGCCACGGGGGGGCAC
TTGCCAGTGAATTCTGCGCCCAGGAATTACCGGGCTACCTGGTGGAAAGC
GAAAAAAATTGGGAAATGGCAACGAAATCAGCCTTAAAAGATGCGTTCGC
ACAAACCGATGCCGCTTTCGCGCAGGCTCTGGCAGGAACGGATCGATTGG
ATGGAACAACCGCGCTGGTCTCTGTCGTGGTAGGCGACAAGCTCTTTGTG
GCCAACGCAGGCGACTCCCGGGCCATACTCGTCCAGCGCGGCGCACGGGT
GGTGCCATTGTCCCGAGACCACAAGCCGTCCTTGCCGGACGAGCTGGAGC
GGATTacggggctgggagggaaggtgatcTTTTGGGGTCGAtggcgggtg
gagggagtCCTGGCTGTCTCCAGGGCGATAGGGGACGCGCATTTGAAGCC
GTACGTGACGCCGGAGCCGGAGGTAACGGAGTGGGAGATCACTGAGAAGG
ACCACTTCCTAGTCGTGGCGAGCGATGGTTTATGGGATGTGCTCTCCAAC
GAGATGGCGGCGCAAATCGTCACCAACCACGGACAAAACCTCGAGCAGGC
AGCGAAAAGGCTCTGCCGTGAGGCCTCTATGAACGGGTCGATGGATAATA
TCAGTGCGATTGTGGTAGACCTGCGGGAGGTTCGGAGAAGACGCAGGGAC
AGGGAAAGGTAG back to top
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