rna1838, rna1838 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1838
Unique Name	rna1838
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2596
Alignment location	CM002458.1:265725..266989 -

Link to JBrowse

Properties


Property Name	Value
Product	cdp-diacylglycerol-inositol 3-phosphatidyltransferase
Orig transcript id	gnl\|cribi\|Naga_100199g9.9706.mrna
Orig protein id	gnl\|cribi\|Naga_100199g9.9706
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:265725..266989 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100199g9	gene1763	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1838	rna1838-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28836.1	cds1834	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:265725..266989-
coding sequence from alignment at CM002458.1:265725..266989-

mRNA sequence

>rna1838 ID=rna1838|Name=rna1838|organism=Nannochloropsis gaditana|type=mRNA|length=2596bp
GGGTGTGCTCATGACAGAGGCGTGTGGCAGCTTTGCTTACGACGCCCTCG
ACCATTGTGTGAACATCGTGGGCTACAACGACGAGGCACCCGAACCCTAC
TTTGTGGTCCGGAACTCCTGGTCGACGTTGTGGGGCGAGGACGGGCACAT
CCTCCTCTCTTCGAAGAACAACACATGCGGCCTTGCCAACGAGGCCACTT
TCGTCACGATTGCCCCGGAGGATTAGGGAGGGAAGAAGGGAGGGAGGGGA
GGAAGGAAGTCTGCCACTTTCGTCACGATTGCCCCGGAGGATTAGGGAGG
GAAGAAGGGAGGGAGGGGAGGAAGGAAGTCTGCCACTTTCGTCACGATTG
CCCCGGAGGATTAGGGAGGGAAGAAGGGAGGGAGGGGAGGAAGGAAGTCT
GGTGGAGGGGGTTAGGGTTTAGGAGCGAGGACGTGATGGGATAGGAGGGA
CGTGAGAGGGTGGGAGGTGTGAAAAGGCGACAAGTGGAGGGCGTGCTGCC
TATGGCCCTCCCGAATCATCACACGCAAACGGGATGACGAGGGAAGGAGA
AGGGCCGCCAGGGAGAGAAATATAAGGAATCGTAATGGAGTAGGAGGTCT
GGGAGGGAGGTTTCTCCCTCCCTTACGGTCATTGTTTGTCATGCGTCCGC
CCCGATGGCCGGAGGGAGTAAGCCATTGTGGAGGGCAAGTAGGGTCCCGC
CCGGCTATACGATACGATATTCCCTCCTTGTCTTGGGGATGGGGAGAGCT
TATGACGCTTAGCCCCCGGGCTGGGCAGCTTACGGAGTGGATCGATGTAT
TTAAAGTTGAACTTAGGAGCTCGGCGGAGGGGGGAGAGGGGGGAGGAAGG
GAGGGTAAGACAGGAGGAGGAATGCCAGAAGGTGGCCCGCGGCGAAGCGA
GGAAATAAGGACCGTCAAGCGTGTGCCTGGCGTTGGAGACGAAGCGAAGC
GAAGTTTGGCTGGTGCGGCGCATGTTCTCACGAGAGCACTCGTTGCTTTC
CTCTGCGCGCCAGCTCTCGTCTATAGATTACCTCTGTCCTGTCCTCCCCT
CACCTACTTGCCACGTTCATTTCTCCCTCTCTTTTTCCATCCCGCACAGA
GATGCGCTCCTTCTTTCGGCTCCTCCCTTCCTCCCTCCTCCTCCTCCTCC
TCCTCCCTTCCCCTCGTCCTACCACCCCCTTCACCCTGCCGTCCAGCCCT
TTCCCACGTCGTCGCCTGCTCTCCCTCTCCCCCGCCATTCCCCCCTCGCC
TCCTCCTCCTCCTCCCTCCTACAAAGGCCTTCGCCTTCTGGAATGGACGA
ACGGCCTCATTTCCCAGAAGGCTCTGGTCAAGACGGCGCGGACCTCTTGG
AACATGCTCTGGAAGATCCTGATGACCGAGCTCGCCCCTCAAGGCAAAGA
CGGTGAATATGTCCGCCCGACGTACTCCTTCACGGACTCGCTGGGCTCCC
CCGCTTTTCCCCTGGAAGAAGGCCGCTACCATCTTTATGTGGGTAACGCC
TGCCCCTGGTGCCACCGACTCACCCTCGCCCACGCCCTGCGCGGCCTCTC
CCAATCCCAACTTTCCTACTCCTACGCGATCGACGACCCCGAGAGAGCCT
CCCGGGGGGGCTGGGCCTTCGACACGATGGGAGAAGGCGGCGGAGGGGAG
GCGGGAGCTCCATTCGCCGACCCCGTCTTTGGGTGCCGCGACTTGAGGGA
GGTGTACGACCTCTGCGCCCCGGGCTACACCGGCCGGTGCACGGCGCCCG
TCCTGGTGGACGTTAAACGCCGCCGGATCGTCAACAACGAAAGCAGCGAC
CTCCTCCGCTTCCTCAACCTCTTCCCTCCCCCCCCGGGACAGACTCACCC
TGACGTGGATCTCTTCCCGCCCTCCCTGCGGCCTCGCATCCTGGAGATCA
ACGCCTGGGTGTACCCGCTCATCAACAACGGTGTCTACCGCTGTGGCTTT
GCCACCTCCCAAGCTGCCTACGACCGGAGCGTCCGAGACGTCTTCCGGGG
CCTGGAGAGCGTGGAAGCGATCTTGACGGACCAGCGATTTTTGGCGGGAG
ATGTCCTCACGGAAGCCGATGTCCGCTTGTTCCCCACCGTTATCAGGTTT
GACGCGGTGTATGCATCCCTATTCAAATGTGCCGGGAAGCGAATTGCGGA
CTACCCGAATTTGACGCAGTGGATGAGGGAGGTATATCAAATCCCAGGGG
TGCGGACCACGGTAGATATACCAGCGCTGATACGAAGCTATTTCGTCCAG
CTCTTCCCCCTGAATCCCTCAGGAATTTGCCCCCAAGGCCCCACAGAAGA
AGACCTTAAAGTTTTGGAAAGACACGATAGGGAGGAGCGCTTTGTGAAAG
CAGGGGGAGGAGGTAGCATATTTGCTACCAAGGGAGAAGAAGACAGGGAG
GGAGGAACCGAAGGTACTTAAAAGAAGCATCCCATATAAAACCAAAAATG
CATCGAAAAGATACCGACAACACAGTCGAGTCCTGCAGATATTTTAACAC
GTGATTTTCAGTTTAATTGAACTGTTCTGTATTGAAAAAATCCGGCGGAT
GAAAGCGCCTGTGTGTAGAAAATATCCTTCGTAACGGTCACTCAGT

protein sequence of rna1838

>rna1838-protein ID=rna1838-protein|Name=rna1838|organism=Nannochloropsis gaditana|type=polypeptide|length=396bp
MPRTSPYRTRGGRVVKSTANVSSGDGSITSTTKPRASSRRATIAGPLASP
VTKRSPAPSTPTYESPSTSKKQSSARKSAGGSRSKGSVSKWAVLFYAPNV
IGYVRVAVTLYAFYLGVQRKSDWRSVVSLYFLAFALDAVDGYVARMCGQE
SGFGGVLDMVTDRTATAGLVMLNLVVEGDELRKFGWICLCMLDIGSHWFH
CVAAAGAHHKSEEATAGKNAVLRWYYACKPLFFACCLGQEAFYLINYIQR
KGGKFGGIAMPSWVPREVEELLPTTVEGWLASITLVFATIKQVVNVVQLA
SAAVTLAEADAQKKKLKANTTEGQTRRQNVKQHHWKHNPMVYIEAQLMER
KRLSNRGNGYLKRLSDRYEGYFLHTGAFIRRIFSIQNSSIKLKITC

mRNA from alignment at CM002458.1:265725..266989-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1838 ID=rna1838|Name=rna1838|organism=Nannochloropsis gaditana|type=mRNA|length=1265bp|location=Sequence derived from alignment at CM002458.1:265725..266989- (Nannochloropsis gaditana)
ATGCCACGGACAAGTCCATACCGTACTCGTGGCGGTCGCGTCGTCAAAAG
CACTGCCAACGTCAGTAGCGGCGACGGCAGCATCACCTCGACGACCAAGC
CTCGTGCCAGCAGCCGGCGTGCGACCATTGCCGGCCCCCTTGCCTCGCCT
GTCACCAAGAGAAGCCCTGCGCCCTCCACTCCCACGTATGAGAGTCCAAG
CACCAGCAAAAAGCAAAGCAGCGCGCGTAAAAGTGCGGGTGGAAGTCGCA
GCAAGGGAAGCGTGAGCAAATGGGCCGTCCTTTTTTACGCTCCGAACGTG
ATCGGCTATGTCCGTGTGGCCGTTACCCTCTATGCCTTCTACCTCGGTGT
GCAGCGTAAGAGCGACTGGAGGTCTGTGGTGAGCCTGTACTTCCTCGCGT
TTGCTTTGGATGCAGTGGACGGCTACGTGGCGCGCATGTGCGGCCAAGAA
AGTGGTTTCGGGGGCGTGCTGGACATGGTCACGGATCGAACCGCTACCGC
TGGTTTGGTCATGTTGAACTTGGTAGTAGAGGGAGATGAGCTCCGGAAAT
TCGGGTGGATATGCCTGTGTATGCTGGATATTGGCTCGCACTGGTTCCAT
TGCGTGGCTGCCGCGGGTGCTCATCACAAGTCGGAGGAGGCGACCGCCGG
GAAGAACGCAGTCTTGCGCTGGTACTACGCGTGCAAGCCTCTCTTCTTCG
CCTGCTGTCTGGGTCAAGAGGCCTTTTACCTGATCAACTACATCCAGAGA
AAAGGAGGGAAGTTCGGGGGGATCGCCATGCCCTCGTGGGTGCCGAGGGA
AGTGGAAGAGCTTCTCCCCACCACAGTGGAGGGCTGGCTCGCGTCGATCA
CCCTGGTCTTTGCCACCATCAAGCAGGTCGTCAACGTCGTTCAGCTGGCC
TCTGCAGCTGTGACACTGGCGGAAGCAGATGCACAAAAGAAGAAGCTGAA
GGCGAGTAAGAAATAACAAAGGAGGGAAAGTCAGACGCAGAGTTTTGGAT
CGGAAATGAGACCCGGAAGTACAAGTAAGATACAACCGAAGGACAAACAA
GACGGCAGAATGTAAAACAGCACCATTGGAAACACAACCCTATGGTTTAC
ATAGAAGCTCAATTGATGGAGAGAAAGAGATTATCAAATCGAGGTAACGG
ATATTTAAAGCGACTGAGTGACCGTTACGAAGGATATTTTCTACACACAG
GCGCTTTCATCCGCCGGATTTTTTCAATACAGAACAGTTCAATTAAACTG
AAAATCACGTGTTAA

Coding sequence (CDS) from alignment at CM002458.1:265725..266989-

>rna1838 ID=rna1838|Name=rna1838|organism=Nannochloropsis gaditana|type=CDS|length=2382bp|location=Sequence derived from alignment at CM002458.1:265725..266989- (Nannochloropsis gaditana)
ATACAACCGAAGGACAAACAAGACGGCAGAATGTAAAACAGCACCATTGG
AAACACAACCCTATGGTTTACATAGAAGCTCAATTGATGGAGAGAAAGAG
ATTATCAAATCGAGGTAACGGATATTTAAAGCGACTGAGTGACCGTTACG
AAGGATATTTTCTACACACAGGCGCTTTCATCCGCCGGATTTTTTCAATA
CAGAACAGTTCAATTAAACTGAAAATCACGTGTTAAATGCCACGGACAAG
TCCATACCGTACTCGTGGCGGTCGCGTCGTCAAAAGCACTGCCAACGTCA
GTAGCGGCGACGGCAGCATCACCTCGACGACCAAGCCTCGTGCCAGCAGC
CGGCGTGCGACCATTGCCGGCCCCCTTGCCTCGCCTGTCACCAAGAGAAG
CCCTGCGCCCTCCACTCCCACGTATGAGAGTCCAAGCACCAGCAAAAAGC
AAAGCAGCGCGCGTAAAAGTGCGGGTGGAAGTCGCAGCAAGGGAAGCGTG
AGCAAATGGGCCGTCCTTTTTTACGCTCCGAACGTGATCGGCTATGTCCG
TGTGGCCGTTACCCTCTATGCCTTCTACCTCGGTGTGCAGCGTAAGAGCG
ACTGGAGGTCTGTGGTGAGCCTGTACTTCCTCGCGTTTGCTTTGGATGCA
GTGGACGGCTACGTGGCGCGCATGTGCGGCCAAGAAAGTGGTTTCGGGGG
CGTGCTGGACATGGTCACGGATCGAACCGCTACCGCTGGTTTGGTCATGT
TGAACTTGGTAGTAGAGGGAGATGAGCTCCGGAAATTCGGGTGGATATGC
CTGTGTATGCTGGATATTGGCTCGCACTGGTTCCATTGCGTGGCTGCCGC
GGGTGCTCATCACAAGTCGGAGGAGGCGACCGCCGGGAAGAACGCAGTCT
TGCGCTGGTACTACGCGTGCAAGCCTCTCTTCTTCGCCTGCTGTCTGGGT
CAAGAGGCCTTTTACCTGATCAACTACATCCAGAGAAAAGGAGGGAAGTT
CGGGGGGATCGCCATGCCCTCGTGGGTGCCGAGGGAAGTGGAAGAGCTTC
TCCCCACCACAGTGGAGGGCTGGCTCGCGTCGATCACCCTGGTCTTTGCC
ACCATCAAGCAGGTCGTCAACGTCGTTCAGCTGGCCTCTGCAGCTGTGAC
ACTGGCGGAAGCAGATGCACAAAAGAAGAAGCTGAAGGCGAATACAACCG
AAGGACAAACAAGACGGCAGAATGTAAAACAGCACCATTGGAAACACAAC
CCTATGGTTTACATAGAAGCTCAATTGATGGAGAGAAAGAGATTATCAAA
TCGAGGTAACGGATATTTAAAGCGACTGAGTGACCGTTACGAAGGATATT
TTCTACACACAGGCGCTTTCATCCGCCGGATTTTTTCAATACAGAACAGT
TCAATTAAACTGAAAATCACGTGTTAAATGCCACGGACAAGTCCATACCG
TACTCGTGGCGGTCGCGTCGTCAAAAGCACTGCCAACGTCAGTAGCGGCG
ACGGCAGCATCACCTCGACGACCAAGCCTCGTGCCAGCAGCCGGCGTGCG
ACCATTGCCGGCCCCCTTGCCTCGCCTGTCACCAAGAGAAGCCCTGCGCC
CTCCACTCCCACGTATGAGAGTCCAAGCACCAGCAAAAAGCAAAGCAGCG
CGCGTAAAAGTGCGGGTGGAAGTCGCAGCAAGGGAAGCGTGAGCAAATGG
GCCGTCCTTTTTTACGCTCCGAACGTGATCGGCTATGTCCGTGTGGCCGT
TACCCTCTATGCCTTCTACCTCGGTGTGCAGCGTAAGAGCGACTGGAGGT
CTGTGGTGAGCCTGTACTTCCTCGCGTTTGCTTTGGATGCAGTGGACGGC
TACGTGGCGCGCATGTGCGGCCAAGAAAGTGGTTTCGGGGGCGTGCTGGA
CATGGTCACGGATCGAACCGCTACCGCTGGTTTGGTCATGTTGAACTTGG
TAGTAGAGGGAGATGAGCTCCGGAAATTCGGGTGGATATGCCTGTGTATG
CTGGATATTGGCTCGCACTGGTTCCATTGCGTGGCTGCCGCGGGTGCTCA
TCACAAGTCGGAGGAGGCGACCGCCGGGAAGAACGCAGTCTTGCGCTGGT
ACTACGCGTGCAAGCCTCTCTTCTTCGCCTGCTGTCTGGGTCAAGAGGCC
TTTTACCTGATCAACTACATCCAGAGAAAAGGAGGGAAGTTCGGGGGGAT
CGCCATGCCCTCGTGGGTGCCGAGGGAAGTGGAAGAGCTTCTCCCCACCA
CAGTGGAGGGCTGGCTCGCGTCGATCACCCTGGTCTTTGCCACCATCAAG
CAGGTCGTCAACGTCGTTCAGCTGGCCTCTGCAGCTGTGACACTGGCGGA
AGCAGATGCACAAAAGAAGAAGCTGAAGGCGA

Synonyms

Publications