rna1832, rna1832 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1832
Unique Name	rna1832
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2921
Alignment location	CM002458.1:250921..252364 -

Link to JBrowse

Properties


Property Name	Value
Product	ornithine mitochondrial-like protein
Orig transcript id	gnl\|cribi\|Naga_100402g6.3861.mrna
Orig protein id	gnl\|cribi\|Naga_100402g6.3861
Gbkey	mRNA
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:250921..252364 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100402g6	gene1758	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28846.1	cds1828	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1832	rna1832-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:250921..252364-
coding sequence from alignment at CM002458.1:250921..252364-

mRNA sequence

>rna1832 ID=rna1832|Name=rna1832|organism=Nannochloropsis gaditana|type=mRNA|length=2921bp
CGGTCCTTATTCGTCGATGACTGACCAGGACATACACGCACGATAGGGGC
CCCGGTGCACGGTCGTGACGGAAAGCCGTGGGTTTGTGTTTGGTTGACTT
CAGACCTATCGTTGCTGCATGGCAAAGCCAAAAAATCTGTTCATAAAGCT
AATGTCTGCGGCCGGCACCGGGTAAGTCACGCAGCAAGAAAGCGTTCAGA
TCGACAGGAAGACCGACGAGCACGCACACTTGGGTTATCAACTACCTTCC
CATCGCATGTCACATCTTCACAGCTTCTTCTATGTCACGCGCAAAAATCC
TAAAAATGTGACAAGGAAACTCGCGCTAAGGAAGGTAGGCAACATGAGAT
ATTGATGGCATGTCTGGAGCCTGACACGAGAAGGGTGGTTGGGGATTTAT
ATAGCGTGAGGTGGGTGCGTGAAGGCAAAGCTGTGTTAAGGAGTTTGCGA
GATAAGGTTGAGTGAATTTTTACGCATTTATCTGAAATCATCGTCCTTTT
CCCTTGTCTTTTACTGCTTTCCTTCCCGAATGTTGCCCGTCAGTACGACC
CAGTTGTCCGAAAGCACGTGCTTTTCACCGAGACAAAGCTGAGGTAGCGG
GTGCGGCATTGGCTTCATTTTGTCGTTGTAAAGTGTATGGCGAAGAATTA
AAGGCATGGGTAACGTGCCGTCTCTGAATTTATGACTACTGCCTTGCAGG
AGTGCATTCATCCTCTCTTGTTCTTTGCATTTCTGTTCGAGGATTGAAAA
AACCACGTTCCAAGTCTTATCATTTCAAATACTAAAGATTGAGGATGGGC
GCGAGCAACTTTAATCCCTCGAGTTCTTTGTTTGACATGTACGGCTCCCT
CATAAGAGCTTAGAGCTCTGTTATATCGCTACTACATTTTAGAAATTACG
CGGACAAGGGTGCACCTTCAATCCTACGAATAGCTCAAGCGCGAAACATT
GTCGGCCTTGTGATCGACACCCTTATTTATATTCTCTATTGTTCTCATTG
TAAAGACTCTGAACCAGATTGTGCGGTGAAGTTGTTACCTCTTCATGTCC
ACTCCGGCAACTTCATAGCACGCCAGCGCACCCCTCTACCTGTGTTGCTG
CAACATATCCACAGCTTGCCTTAACTATGAATGTCCTTTGCCATTCAAGG
TGCTGTCCCATGGGTGTATGTTTCAAGACTTGTTTTTGCGGCCTTTTTTT
CTCCCTCGTCCCTGGGGAGTTTTTCTCACGGCTTTGAAAAGTCAACTTTC
CGTTATACTTATTTGAGGTAAAATTGAGGACAAAACTAATTTCATGTGTT
GCCTAGAATAGAAAATTTCATACGAGCAGGTCGCAATCGTGGTTAACAAG
ATTCTTGGGGGGGGAATAAGGAGAAGGGGGGATGCAAACAAGGTGTCACA
TAGTTATGGGGTGGGGAGGTTTTCCTTTGATCGATCTTTACATACACTTC
TGCGGTAAATCTGCGACTTCGATGAAAGGTTAGCAATCTCCTTACATTTG
GTGACTGAATGTCTGCAGTCGGATGGATCTGCATGCAAATGCTAACTATA
CTTCTTTCGCTTCCTAAAACAGGATACTCTCGTAGGCTCCTTTCCCCCCG
GTCACTCCACCATGTGGGCACTTAAGCTGTCCCGTCCTTTCATGGAGTGT
CACACGCGACATCTAAAGCCAAATTTGCTTGCAAACGGATACGGGCTCTG
GGCGCGGGAGGGAGGCATGCGCTCTTTTCAAGGCGTGGCCAGTCTGCAAG
GGAAAAACTTTATGAACATCGACGAACTCACGGACGTCGAGCTCCGGGAC
CTCCTTTCCCTTTCTGCTCAATTGAAGAAAGCCTATTCCTCGCCCAGTCC
TCCCGTCCTTCCTCGGCCGTGCGAGGGAAAAAGCGTCAGTATGATTTTCC
AAAAACGCAGTACGCGTACACGCGTATCGACCGAGACAGGCATGGCTCTT
CTGGGTGGCCACGCCTTGTTTCTGGGTCCACAAGATGTACAGTTGGGCGT
AAACGAGAGTATGCGGGACACGGCGAATGTGCTTTCCCGCTTCAATTCCC
TTATCCTCGCCCGAGTGTTCGCCCACACGGACGTCCAGCTCCTCGCGAAA
CATTCCAGCGTCCCCGTCATCAATGCCTTGTCCGATCTTTACCACCCTTT
GCAGGCCCTGGCCGATCTCCTGACCCTGGAGGAGCATTTTGGGAAGGGGA
GTTTACAGGGGAAAGTTCTGACATGGGTAGGTGACGGGAACAACGTCCTG
CACGATCTGGCCATGGGCGCAGCTCGTCTGGGTATGCACGTGCGGGTAGC
CTGTCCCGTCGGCTACGAGCCCAACGGCGAAATTATGCACCGGGTGGAGT
GGCACGCCCAGCGGTCGGGGGGGTCGTATGTGATGGAAAGAGACCCGATG
ACGGCCGTCGCGGGCGCGCACGTGATCGTGACGGACACCTGGGTGAGCAT
GGGCCAAGAGGAGGAGTACGAGAGGCGGATGCGGGATTTTGAGGGCTTTC
AGGTGACGAGACGCATGATGGAGCATGGGGCCAAGGGGTCAAATGCCGGG
CGGCCGGCCTGCGTGTTCTTGCACTGCCTGCCCCGCCATCCCGAGGAGGT
GACGGACGAGGTCTTTTACGACCCCGCACGGAGTTTGGTGTTCCCAGAGG
CGGAAAACCGGATGTGGACGGTCATGGCCGTCATGCTTTCGTTGGTGGGG
GGGGGGGGAAGAGGGTGTGAGGTGGGAGAGAGTCACAACGGTGGGGGGGG
GAGAAGGAGTAGCTGACAGGCAAAGGGCAAACAATGGCGGGGGACAATCC
CAACTAAATGACCACAGCTCAAGGCAAAACTTCAGGGCTTTTCTTGCTTG
CGGCTGCCTCTCCTTTGGAAGAAACCGGGCGTCTTGTCTAGTCAAAGTAG
AAACTCTCCGGGCGGCGTTGC

protein sequence of rna1832

>rna1832-protein ID=rna1832-protein|Name=rna1832|organism=Nannochloropsis gaditana|type=polypeptide|length=379bp
MRWIVHVLRIPPSSSRLHSNSFLNLQPRPGMRSFQGVASLQGKNFMNIDE
LTDVELRDLLSLSAQLKKAYSSPSPPVLPRPCEGKSVSMIFQKRSTRTRV
STETGMALLGGHALFLGPQDVQLGVNESMRDTANVLSRFNSLILARVFAH
TDVQLLAKHSSVPVINALSDLYHPLQALADLLTLEEHFGKGSLQGKVLTW
VGDGNNVLHDLAMGAARLGMHVRVACPVGYEPNGEIMHRVEWHAQRSGGS
YVMERDPMTAVAGAHVIVTDTWVSMGQEEEYERRMRDFEGFQVTRRMMEH
GAKGSNAGRPACVFLHCLPRHPEEVTDEVFYDPARSLVFPEAENRMWTVM
AVMLSLVGGGGRGCEVGESHNGGGGRRSS

mRNA from alignment at CM002458.1:250921..252364-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1832 ID=rna1832|Name=rna1832|organism=Nannochloropsis gaditana|type=mRNA|length=1444bp|location=Sequence derived from alignment at CM002458.1:250921..252364- (Nannochloropsis gaditana)
CGTTCTTGGTTATAGGTTGAAAGTCTTGCCTCCGAGACCCTACATCTCTC
TTCACCGTTGTACTTAAATCCTCCTTCCTTCTGTTCGTGGCTACCGGTTG
AAAGCGTACATCGTCTTCACCCTTAGTTAGGACTCTTTTCGTTCAAGTCA
TGCGTTGGATTGTTCATGTGTTGCGTATACCTCCTAGCTCCTCACGACTC
CATTCCAACTCATTTTTGAATTTACAACCGCGTCCAGGCATGCGCTCTTT
TCAAGGCGTGGCCAGTCTGCAAGGGAAAAACTTTATGAACATCGACGAAC
TCACGGACGTCGAGCTCCGGGACCTCCTTTCCCTTTCTGCTCAATTGAAG
AAAGCCTATTCCTCGCCCAGTCCTCCCGTCCTTCCTCGGCCGTGCGAGGG
AAAAAGCGTCAGTATGATTTTCCAAAAACGCAGTACGCGTACACGCGTAT
CGACCGAGACAGGCATGGCTCTTCTGGGTGGCCACGCCTTGTTTCTGGGT
CCACAAGATGTACAGTTGGGCGTAAACGAGAGTATGCGGGACACGGCGAA
TGTGCTTTCCCGCTTCAATTCCCTTATCCTCGCCCGAGTGTTCGCCCACA
CGGACGTCCAGCTCCTCGCGAAACATTCCAGCGTCCCCGTCATCAATGCC
TTGTCCGATCTTTACCACCCTTTGCAGGCCCTGGCCGATCTCCTGACCCT
GGAGGAGCATTTTGGGAAGGGGAGTTTACAGGGGAAAGTTCTGACATGGG
TAGGTGACGGGAACAACGTCCTGCACGATCTGGCCATGGGCGCAGCTCGT
CTGGGTATGCACGTGCGGGTAGCCTGTCCCGTCGGCTACGAGCCCAACGG
CGAAATTATGCACCGGGTGGAGTGGCACGCCCAGCGGTCGGGGGGGTCGT
ATGTGATGGAAAGAGACCCGATGACGGCCGTCGCGGGCGCGCACGTGATC
GTGACGGACACCTGGGTGAGCATGGGCCAAGAGGAGGAGTACGAGAGGCG
GATGCGGGATTTTGAGGGCTTTCAGGTGACGAGACGCATGATGGAGCATG
GGGCCAAGGGGTCAAATGCCGGGCGGCCGGCCTGCGTGTTCTTGCACTGC
CTGCCCCGCCATCCCGAGGAGGTGACGGACGAGGTCTTTTACGACCCCGC
ACGGAGTTTGGTGTTCCCAGAGGCGGAAAACCGGATGTGGACGGTCATGG
CCGTCATGCTTTCGTTGGTGGGGGGGGGGGGAAGAGGGTGTGAGGTGGGA
GAGAGTCACAACGGTGGGGGGGGGAGAAGGAGTAGCTGACAGGCAAAGGG
CAAACAATGGCGGGGGACAATCCCAACTAAATGACCACAGCTCAAGGCAA
AACTTCAGGGCTTTTCTTGCTTGCGGCTGCCTCTCCTTTGGAAGAAACCG
GGCGTCTTGTCTAGTCAAAGTAGAAACTCTCCGGGCGGCGTTGC

Coding sequence (CDS) from alignment at CM002458.1:250921..252364-

>rna1832 ID=rna1832|Name=rna1832|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at CM002458.1:250921..252364- (Nannochloropsis gaditana)
ATGCGTTGGATTGTTCATGTGTTGCGTATACCTCCTAGCTCCTCACGACT
CCATTCCAACTCATTTTTGAATTTACAACCGCGTCCAGGCATGCGCTCTT
TTCAAGGCGTGGCCAGTCTGCAAGGGAAAAACTTTATGAACATCGACGAA
CTCACGGACGTCGAGCTCCGGGACCTCCTTTCCCTTTCTGCTCAATTGAA
GAAAGCCTATTCCTCGCCCAGTCCTCCCGTCCTTCCTCGGCCGTGCGAGG
GAAAAAGCGTCAGTATGATTTTCCAAAAACGCAGTACGCGTACACGCGTA
TCGACCGAGACAGGCATGGCTCTTCTGGGTGGCCACGCCTTGTTTCTGGG
TCCACAAGATGTACAGTTGGGCGTAAACGAGAGTATGCGGGACACGGCGA
ATGTGCTTTCCCGCTTCAATTCCCTTATCCTCGCCCGAGTGTTCGCCCAC
ACGGACGTCCAGCTCCTCGCGAAACATTCCAGCGTCCCCGTCATCAATGC
CTTGTCCGATCTTTACCACCCTTTGCAGGCCCTGGCCGATCTCCTGACCC
TGGAGGAGCATTTTGGGAAGGGGAGTTTACAGGGGAAAGTTCTGACATGG
GTAGGTGACGGGAACAACGTCCTGCACGATCTGGCCATGGGCGCAGCTCG
TCTGGGTATGCACGTGCGGGTAGCCTGTCCCGTCGGCTACGAGCCCAACG
GCGAAATTATGCACCGGGTGGAGTGGCACGCCCAGCGGTCGGGGGGGTCG
TATGTGATGGAAAGAGACCCGATGACGGCCGTCGCGGGCGCGCACGTGAT
CGTGACGGACACCTGGGTGAGCATGGGCCAAGAGGAGGAGTACGAGAGGC
GGATGCGGGATTTTGAGGGCTTTCAGGTGACGAGACGCATGATGGAGCAT
GGGGCCAAGGGGTCAAATGCCGGGCGGCCGGCCTGCGTGTTCTTGCACTG
CCTGCCCCGCCATCCCGAGGAGGTGACGGACGAGGTCTTTTACGACCCCG
CACGGAGTTTGGTGTTCCCAGAGGCGGAAAACCGGATGTGGACGGTCATG
GCCGTCATGCTTTCGTTGGTGGGGGGGGGGGGAAGAGGGTGTGAGGTGGG
AGAGAGTCACAACGGTGGGGGGGGGAGAAGGAGTAGCTGA

Synonyms

Publications