rna183, rna183 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna183
Unique Name	rna183
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	859
Alignment location	CM002455.1:479459..481506 +

Link to JBrowse

Properties


Property Name	Value
Product	poly -specific ribonuclease parn
Orig transcript id	gnl\|cribi\|Naga_100013g35.9788.mrna
Orig protein id	gnl\|cribi\|Naga_100013g35.9788
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:479459..481506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g35	gene174	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna183	rna183-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30500.1	cds183	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:479459..481506+
coding sequence from alignment at CM002455.1:479459..481506+

mRNA sequence

>rna183 ID=rna183|Name=rna183|organism=Nannochloropsis gaditana|type=mRNA|length=859bp
ATGCGGCGTAGGAGAGCAGAGAACTCCGATGATGAGGAAAACGACAACCC
GGGCATCAAGATAAAAAAACTTGTCCAGATACGAGAAGAGCAGAAGCAGC
GCAAAGTTAGGCTGGGCATCCAGGCGGCCTCCACCCTTGAGACCGAGCGT
GCCGGGGCCGGCGGGAGCAGGAAGGAAAGCAAAGCGGCGGCGGAGGAGGA
GGAAGATGAGGCCGAGCAACAGCGCAGCATTGGAGAGATGATGGAGTCAA
GTTTCACGGGAATGAAATACGTGACAAAGGACGATACCAACGTCCACGAA
AGAATCATGGAGCAGTACATCGAAGAAAGGCTGGGCAACGTGAAAGAGGA
GGCGCCTGAGGTCGTCGTCCCGAGCGAGGCTGTCCCGCCCTCGAAGGTGT
CGCGCCGAGAGCAGCTTCTGGCCATCACGGAAGAGATCCATGCCCGGGCT
CGCGGCCCGGCGGGCGACAAGGCCGCCGACGCGGAGGGGGGCGTGGGGGA
GGGAGCCCCCATCGCTTTCAGCACCGGGATCGCCGAGGTGGCCCTGCCCG
TGGAGTTCAAGCTGCAGAACATTGAGGCCACTGAGCGGGCACGGCTGCTC
CAAGAAGAGCAACTCTTGCTCCGGCAGCAAGGGGAGAAGAAGGGCGAAAT
CATCGGGAGCTTGACGCACAATTACCACCACCATCGAAAGGAGTATGCGA
TCAACATGCGGGCCCGCGAAGGGAAGCCCAAGGGGATATTCAGGCGCGAG
GACGGTGAGGGCCCCAGAGGTCGCGACACTATGACCGACGACCAGGTCTA
CGCGAAGTTCAAGAAGAGGAAGTACTGAAAAGAAGCAAGGGAATACCACA
GTCAACAAT

protein sequence of rna183

>rna183-protein ID=rna183-protein|Name=rna183|organism=Nannochloropsis gaditana|type=polypeptide|length=644bp
MHIASLGPFAGSLESTPRTMDVTKATFADVLPEIEAALQNCEFVAVDFEM
SGINLAGQPRITYADTMQERYAQQRVVASRFKIIQMGISIVSKVEKTGSS
GNSASHTLVACPYNFYTFAADGDDVILSLSAIHFLKDHGMDFNKWIQEGV
SYTNAAREEELIKRLDCERERDEEEIKKPEGGAPGKTQMNLTKPADVEFM
KKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRA
LFEAIEIYYPDLITESRNNQVIVLRLSAAEKEERMAAREAARQSRRLSTV
GMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRAC
FPAGVYDTRLISTREDLLGKSLGDKGLEGLCQALVQETPEGGVDLVLAEG
FEKYGGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLEKLKMMVFSFR
SMFVTNLGEDRDWPVYGQQGELVFHLGWEKEAGKDLKDADLMKLFGDRSA
DTWILWIDDCGAFAVLQGKEGGEALRGEDVLKALPETSTVVRVTTFKDWC
AAKEAETEAAGEPVEVGKDGWEKVRKHEKRLVILDQLPRSNWSATISCAS
CKNCVILMILLGLTLTLTDDFVRVVGWTSRQIMFQNQSHHDFDN

mRNA from alignment at CM002455.1:479459..481506+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna183 ID=rna183|Name=rna183|organism=Nannochloropsis gaditana|type=mRNA|length=2048bp|location=Sequence derived from alignment at CM002455.1:479459..481506+ (Nannochloropsis gaditana)
ATGCACATAGCGTCCCTAGGGCCATTTGCAGGCAGTCTTGAATCGACGCC
CCGGACAATGGATGTCACAAAGGCCACATTTGCCGATGTTTTGCCTGAAA
TAGAGGCAGCATTGCAGAACTGTGAGTTTGTGGCTGTCGATTTTGAAATG
TCAGGCATTAATCTTGCAGGGCAGCCGCGCATCACCTACGCTGACACCAT
GCAAGAAAGGTACGCACAACAGCGCGTGGTCGCCTCGCGCTTCAAGATCA
TCCAAATGGGAATAAGCATTGTTAGTAAAGTAGAAAAGACAGGGAGCAGC
GGTAATTCTGCGTCGCATACTTTAGTGGCCTGTCCGTATAATTTCTACAC
CTTTGCTGCGGATGGCGACGACGTGATATTGAGCCTTTCAGCAATACATT
TCCTGAAAGATCACGGGATGGATTTTAACAAATGGATCCAGGAGGGCGTA
TCATACACTAACGccgcgcgggaggaggagctgattAAAAGACTGGACTG
TGAACGTgaaagggacgaggaggaaataaagAAACCGGAAGGCGGTGCCC
CGGGGAAAACGCAGATGAACCTGACTAAACCGGCCGATGTTGAGTTTATG
AAAAAGCAGATGGAGGTTGTGAAAGCatggcgggaggaaagcgagatATT
AGGTGGTGCAGAAAGTttgtcggaggaggagaaaagcgaAGCGGCGCGAC
GACGCAAGGAGTTGACGCTGGCTCGCACGAACGCTTTCATGAGGCGTGCA
CTTTTTGAAGCAATCGAGATTTACTACCCTGATCTGATCACAGAATCACG
GAACAATCAAGTTATCGTCCTCCGCTTGAGCGccgcggaaaaagaagaga
ggatggcagcgcgggaggcggccagaCAGTCGCGGAGGCTCAGCACAGTG
GGGATGCGATTGGTCTTCAAGGCCATGTCTGCCTGCGCCCGTCCCATCGT
CGTTCACAATGGCTTCTTTGATCTGCTTTTCATGATGGCAGCTTTCCACA
AACCATTGCCCGAGAAGCTGGTGGACTTCAAGGCCGACGTGCGGGCCTGC
TTCCCAGCCGGCGTCTACGACACCCGCCTCATTTCCACGAGGGAGGACCT
ATTGGGCAAGTCCCTGGGCGACAAGGGACTCGAGGGCCTGTGCCAAGCTC
TGGTCCAAGAAacgccggagggaggtgtggaCCTGGTGTTGGCGGAGGGG
TTCGAAAAATACGGGGGGAGCGAGCGGCAGGCGTTCGCGCACGAAGCGGG
CTACGACGCCTACTTGACCGGAGCCGTCTTTGCGCGCATGCAGGTCTTGT
TGGGAGACGCGGGCCTTGAAAAGCTGAAGATGATGGTGTTCTCCTTCCGG
AGCATGTTCGTGACGAACCTGGGCGAAGACAGGGACTGGCCTGTGTACGG
GCAGCAAGGGGAGCTGGTCTTCCATttggggtgggaaaaggaggccggCA
AGGACCTGAAGGACGCGGACCTGATGAAGTTGTTCGGGGACCGCTCGGCG
GACACCTGGATCCTCTGGATCGACGACTGCGGGGCCTTTGCCGTGctgca
ggggaaggaagggggggaggcgctgaggggggaggacgtgctTAAGGCTC
TGCCGGAAACCTCCACCGTTGTCCGGGTAACCACCTTCAAGGACTGGTGT
GCCGCgaaagaggcagagacgGAGGCTGCAGGGGAGCCtgtggaggtagg
gaaggatggatggGAGAAGGGTAAGCGGCTTCGTGTCGCCTAGACTGCGG
AAAAAGAGGTCGGAGATCACTCGCGTCCACGAAAAAGAGGCCAATCCCTA
CTGACCACATTTTCACAGGCCGCAGCGACTAAGTGAGGAAACACGAAAAG
AGACTTGTGATTTTGGATCAGCTACCCAGAAGCAACTGGAGTGCTACGAT
ATCTTGCGCGAGCTGTAAGAATTGCGTGATTTTGATGATTTTGTTAGGgt
taaccctaaccctaactgATGATTTTGTTAGAGTCGTTGGATGGACTAGT
CGCCAGATTATGTTTCAAAATCAAAGCCATCATGATTTCGATAATTAA

Coding sequence (CDS) from alignment at CM002455.1:479459..481506+

>rna183 ID=rna183|Name=rna183|organism=Nannochloropsis gaditana|type=CDS|length=3870bp|location=Sequence derived from alignment at CM002455.1:479459..481506+ (Nannochloropsis gaditana)
ATGCACATAGCGTCCCTAGGGCCATTTGCAGGCAGTCTTGAATCGACGCC
CCGGACAATGGATGTCACAAAGGCCACATTTGCCGATGTTTTGCCTGAAA
TAGAGGCAGCATTGCAGAACTGTGAGTTTGTGGCTGTCGATTTTGAAATG
TCAGGCATTAATCTTGCAGGGCAGCCGCGCATCACCTACGCTGACACCAT
GCAAGAAAGGTACGCACAACAGCGCGTGGTCGCCTCGCGCTTCAAGATCA
TCCAAATGGGAATAAGCATTGTTAGTAAAGTAGAAAAGACAGGGAGCAGC
GGTAATTCTGCGTCGCATACTTTAGTGGCCTGTCCGTATAATTTCTACAC
CTTTGCTGCGGATGGCGACGACGTGATATTGAGCCTTTCAGCAATACATT
TCCTGAAAGATCACGGGATGGATTTTAACAAATGGATCCAGGAGGGCGTA
TCATACACTAACGccgcgcgggaggaggagctgattAAAAGACTGGACTG
TGAACGTgaaagggacgaggaggaaataaagAAACCGGAAGGCGGTGCCC
CGGGGAAAACGCAGATGAACCTGACTAAACCGGCCGATGTTGAGTTTATG
AAAAAGCAGATGGAGGTTGTGAAAGCatggcgggaggaaagcgagatATT
AGGTGGTGCAGAAAGTttgtcggaggaggagaaaagcgaAGCGGCGCGAC
GACGCAAGGAGTTGACGCTGGCTCGCACGAACGCTTTCATGAGGCGTGCA
CTTTTTGAAGCAATCGAGATTTACTACCCTGATCTGATCACAGAATCACG
GAACAATCAAGTTATCGTCCTCCGCTTGAGCGccgcggaaaaagaagaga
ggatggcagcgcgggaggcggccagaCAGTCGCGGAGGCTCAGCACAGTG
GGGATGCGATTGGTCTTCAAGGCCATGTCTGCCTGCGCCCGTCCCATCGT
CGTTCACAATGGCTTCTTTGATCTGCTTTTCATGATGGCAGCTTTCCACA
AACCATTGCCCGAGAAGCTGGTGGACTTCAAGGCCGACGTGCGGGCCTGC
TTCCCAGCCGGCGTCTACGACACCCGCCTCATTTCCACGAGGGAGGACCT
ATTGGGCAAGTCCCTGGGCGACAAGGGACTCGAGGGCCTGTGCCAAGCTC
TGGTCCAAGAAacgccggagggaggtgtggaCCTGGTGTTGGCGGAGGGG
TTCGAAAAATACGGGGGGAGCGAGCGGCAGGCGTTCGCGCACGAAGCGGG
CTACGACGCCTACTTGACCGGAGCCGTCTTTGCGCGCATGCAGGTCTTGT
TGGGAGACGCGGGCCTTGAAAAGCTGAAGATGATGGTGTTCTCCTTCCGG
AGCATGTTCGTGACGAACCTGGGCGAAGACAGGGACTGGCCTGTGTACGG
GCAGCAAGGGGAGCTGGTCTTCCATttggggtgggaaaaggaggccggCA
AGGACCTGAAGGACGCGGACCTGATGAAGTTGTTCGGGGACCGCTCGGCG
GACACCTGGATCCTCTGGATCGACGACTGCGGGGCCTTTGCCGTGctgca
ggggaaggaagggggggaggcgctgaggggggaggacgtgctTAAGGCTC
TGCCGGAAACCTCCACCGTTGTCCGGGTAACCACCTTCAAGGACTGGTGT
GCCGCgaaagaggcagagacgGAGGCTGCAGGGGAGCCtgtggaggtagg
gaaggatggatggGAGAAGGTGAGGAAACACGAAAAGAGACTTGTGATTT
TGGATCAGCTACCCAGAAGCAACTGGAGTGCTACGATATCTTGCGCGAGC
TGTAAGAATTGCGTGATTTTGATGATTTTGTTAGGgttaaccctaaccct
aactgATGATTTTGTTAGAGTCGTTGGATGGACTAGTCGCCAGATTATGT
TTCAAAATCAAAGCCATCATGATTTCGATAATTAAATGCACATAGCGTCC
CTAGGGCCATTTGCAGGCAGTCTTGAATCGACGCCCCGGACAATGGATGT
CACAAAGGCCACATTTGCCGATGTTTTGCCTGAAATAGAGGCAGCATTGC
AGAACTGTGAGTTTGTGGCTGTCGATTTTGAAATGTCAGGCATTAATCTT
GCAGGGCAGCCGCGCATCACCTACGCTGACACCATGCAAGAAAGGTACGC
ACAACAGCGCGTGGTCGCCTCGCGCTTCAAGATCATCCAAATGGGAATAA
GCATTGTTAGTAAAGTAGAAAAGACAGGGAGCAGCGGTAATTCTGCGTCG
CATACTTTAGTGGCCTGTCCGTATAATTTCTACACCTTTGCTGCGGATGG
CGACGACGTGATATTGAGCCTTTCAGCAATACATTTCCTGAAAGATCACG
GGATGGATTTTAACAAATGGATCCAGGAGGGCGTATCATACACTAACGcc
gcgcgggaggaggagctgattAAAAGACTGGACTGTGAACGTgaaaggga
cgaggaggaaataaagAAACCGGAAGGCGGTGCCCCGGGGAAAACGCAGA
TGAACCTGACTAAACCGGCCGATGTTGAGTTTATGAAAAAGCAGATGGAG
GTTGTGAAAGCatggcgggaggaaagcgagatATTAGGTGGTGCAGAAAG
TttgtcggaggaggagaaaagcgaAGCGGCGCGACGACGCAAGGAGTTGA
CGCTGGCTCGCACGAACGCTTTCATGAGGCGTGCACTTTTTGAAGCAATC
GAGATTTACTACCCTGATCTGATCACAGAATCACGGAACAATCAAGTTAT
CGTCCTCCGCTTGAGCGccgcggaaaaagaagagaggatggcagcgcggg
aggcggccagaCAGTCGCGGAGGCTCAGCACAGTGGGGATGCGATTGGTC
TTCAAGGCCATGTCTGCCTGCGCCCGTCCCATCGTCGTTCACAATGGCTT
CTTTGATCTGCTTTTCATGATGGCAGCTTTCCACAAACCATTGCCCGAGA
AGCTGGTGGACTTCAAGGCCGACGTGCGGGCCTGCTTCCCAGCCGGCGTC
TACGACACCCGCCTCATTTCCACGAGGGAGGACCTATTGGGCAAGTCCCT
GGGCGACAAGGGACTCGAGGGCCTGTGCCAAGCTCTGGTCCAAGAAacgc
cggagggaggtgtggaCCTGGTGTTGGCGGAGGGGTTCGAAAAATACGGG
GGGAGCGAGCGGCAGGCGTTCGCGCACGAAGCGGGCTACGACGCCTACTT
GACCGGAGCCGTCTTTGCGCGCATGCAGGTCTTGTTGGGAGACGCGGGCC
TTGAAAAGCTGAAGATGATGGTGTTCTCCTTCCGGAGCATGTTCGTGACG
AACCTGGGCGAAGACAGGGACTGGCCTGTGTACGGGCAGCAAGGGGAGCT
GGTCTTCCATttggggtgggaaaaggaggccggCAAGGACCTGAAGGACG
CGGACCTGATGAAGTTGTTCGGGGACCGCTCGGCGGACACCTGGATCCTC
TGGATCGACGACTGCGGGGCCTTTGCCGTGctgcaggggaaggaaggggg
ggaggcgctgaggggggaggacgtgctTAAGGCTCTGCCGGAAACCTCCA
CCGTTGTCCGGGTAACCACCTTCAAGGACTGGTGTGCCGCgaaagaggca
gagacgGAGGCTGCAGGGGAGCCtgtggaggtagggaaggatggatggGA
GAAGGTGAGGAAACACGAAAAGAGACTTGTGATTTTGGATCAGCTACCCA
GAAGCAACTGGAGTGCTACGATATCTTGCGCGAGCTGTAAGAATTGCGTG
ATTTTGATGATTTTGTTAGGgttaaccctaaccctaactgATGATTTTGT
TAGAGTCGTTGGATGGACTAGTCGCCAGATTATGTTTCAAAATCAAAGCC
ATCATGATTTCGATAATTAA

Synonyms

Publications