EWM30500.1, cds183 (CDS) Nannochloropsis gaditana

Overview
NameEWM30500.1
Unique Namecds183
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:479459..481178 +
Alignment locationCM002455.1:481292..481506 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30500.1
Productpoly -specific ribonuclease parn
Orig transcript idgnl|cribi|Naga_100013g35.9788.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:479459..481178 +
CM002455.1supercontigCM002455.1:481292..481506 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001374R3H_ss-bd
IPR006941RNase_CAF1
Homology
BLAST of EWM30500.1 vs. NCBI_GenBank
Match: gi|585113164|gb|EWM30500.1| (poly -specific ribonuclease parn [Nannochloropsis gaditana])

HSP 1 Score: 1332.39 bits (3447), Expect = 0.000e+0
Identity = 644/644 (100.00%), Postives = 644/644 (100.00%), Query Frame = 0
Query:    1 MHIASLGPFAGSLESTPRTMDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTMQERYAQQRVVASRFKIIQMGISIVSKVEKTGSSGNSASHTLVACPYNFYTFAADGDDVILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEELIKRLDCERERDEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESRNNQVIVLRLSAAEKEERMAAREAARQSRRLSTVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLLGKSLGDKGLEGLCQALVQETPEGGVDLVLAEGFEKYGGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLEKLKMMVFSFRSMFVTNLGEDRDWPVYGQQGELVFHLGWEKEAGKDLKDADLMKLFGDRSADTWILWIDDCGAFAVLQGKEGGEALRGEDVLKALPETSTVVRVTTFKDWCAAKEAETEAAGEPVEVGKDGWEKVRKHEKRLVILDQLPRSNWSATISCASCKNCVILMILLGLTLTLTDDFVRVVGWTSRQIMFQNQSHHDFDN 644
            MHIASLGPFAGSLESTPRTMDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTMQERYAQQRVVASRFKIIQMGISIVSKVEKTGSSGNSASHTLVACPYNFYTFAADGDDVILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEELIKRLDCERERDEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESRNNQVIVLRLSAAEKEERMAAREAARQSRRLSTVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLLGKSLGDKGLEGLCQALVQETPEGGVDLVLAEGFEKYGGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLEKLKMMVFSFRSMFVTNLGEDRDWPVYGQQGELVFHLGWEKEAGKDLKDADLMKLFGDRSADTWILWIDDCGAFAVLQGKEGGEALRGEDVLKALPETSTVVRVTTFKDWCAAKEAETEAAGEPVEVGKDGWEKVRKHEKRLVILDQLPRSNWSATISCASCKNCVILMILLGLTLTLTDDFVRVVGWTSRQIMFQNQSHHDFDN
Sbjct:    1 MHIASLGPFAGSLESTPRTMDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTMQERYAQQRVVASRFKIIQMGISIVSKVEKTGSSGNSASHTLVACPYNFYTFAADGDDVILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEELIKRLDCERERDEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESRNNQVIVLRLSAAEKEERMAAREAARQSRRLSTVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLLGKSLGDKGLEGLCQALVQETPEGGVDLVLAEGFEKYGGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLEKLKMMVFSFRSMFVTNLGEDRDWPVYGQQGELVFHLGWEKEAGKDLKDADLMKLFGDRSADTWILWIDDCGAFAVLQGKEGGEALRGEDVLKALPETSTVVRVTTFKDWCAAKEAETEAAGEPVEVGKDGWEKVRKHEKRLVILDQLPRSNWSATISCASCKNCVILMILLGLTLTLTDDFVRVVGWTSRQIMFQNQSHHDFDN 644          
BLAST of EWM30500.1 vs. NCBI_GenBank
Match: gi|1129213218|gb|OLQ14170.1| (Poly(A)-specific ribonuclease PARN [Symbiodinium microadriaticum])

HSP 1 Score: 225.713 bits (574), Expect = 5.062e-59
Identity = 177/544 (32.54%), Postives = 260/544 (47.79%), Query Frame = 0
Query:   18 RTMDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTMQERYAQQRVVASRFKIIQMGISIVSKVEKTGSSGNSASHTLVACPYNFYTFAADGDDVILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEELIKRLDCERERDEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESRNNQV------IVLRLSAAEKEERMAAREAARQSRRLSTVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLLGKSLGDKG---------LEGLCQALVQETPEG-------GVDLVLAEGFEKYGGSERQAFAHEAGYDAYLTGAVFARM-QVLLGDAGLEKLKMMVFSFRSMFVTNL-GED----------------RDWPVYGQQGELVFHLGWEKEAGKDLKDADLMKLFGDRSADTWILWIDDCGAFAVLQGKEG 521
            R M+VTK+ F D   E+E  L + EFVA+D EM+GI L G       D    RY++ R VAS + IIQ G+++ +K E        + +  VA  YNFYTF   G  V +  S++HF   +GMD+N WI+EGV Y       +L  +L  E           E  +P   ++ LT   D+E   K +  +K W            L+EE + +     KE  +   NA++RR + E +   +PDL  ESR  ++      + LRL+AAEK ER A   A +++     VG+R VF A++   +PI+ H   +DL+F  + F  PLPE   DFK  V   FP+ VYDT+L++  + L  KS  D G           G    +++E  E         V + LAEG E+Y  +   A  HEAG+DAY+TG  FA M + +  + G +  K  +  FR+ F  NL GED                R+   + +  + +      K  G D+ +A L     D +    I W+DD  AFA+   + G
Sbjct:  624 RAMNVTKSNFLDAAAEVERLLPSVEFVAIDEEMTGIFLPGLQEFI-GDAPSTRYSKMRRVASNYSIIQFGVALFTKEE-------GSENKFVAHAYNFYTFPETGA-VNMEASSVHFNSKNGMDWNSWIREGVPYVTREAAAKLKLQLFPE-----------ENTSPAAKRIQLTSTFDIENTDKAIASLKDW------------LAEEGQDQ-----KEFEIITCNAYLRRFMHETLRESFPDLAVESRPTKIRGLSTMVALRLTAAEKVERDARIRAEKEAEFTMKVGVRRVFAALANSKKPIIGHACLYDLMFAFSHFEGPLPESFSDFKKSVCDLFPS-VYDTQLLARSDALKLKS--DSGELQQRFKSFALGEVHRVLREEAEAQRADGVETVQITLAEGHERYATA---ASYHEAGFDAYITGCAFAYMARHVPAEEGDKTFKGRLVMFRNFFNVNLQGEDELITDGAYLHTRGLTGRNATEFTEILQSILKKIKAKPEGSDM-EATL-----DSNDSFQIRWVDDDSAFAIFPAQSG 1118          
BLAST of EWM30500.1 vs. NCBI_GenBank
Match: gi|873229979|emb|CEM11778.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 209.92 bits (533), Expect = 1.636e-56
Identity = 164/529 (31.00%), Postives = 253/529 (47.83%), Query Frame = 0
Query:   34 IEAALQNCEFVAVDFEMSGINLAGQP--RITYADTMQERYAQQRVVASRFKIIQMGISIVSKVEKTGSSGNSASHTLVACPYNFYTFAADGDD-----VILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEELIKRL-DCERERDEEEIKKPEGGAPGKTQ--MNLTKPADVEFMKKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESRNN------QVIVLRLSAAEKEERMAAREAARQSRRLSTVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLLGKSLGDKGLEGLCQALVQETPEGGVDLVLAEGFEKYGGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLEKLKMMVFSFRSM-----FVTN-----LGEDRDWPVYGQQGELVFHLGWEKEAGKDLKDADLMKLFGDRSADT------WILWIDDCGAFAVLQGK-----EGGEAL 525
             EAA+ +  F+A+D EM+GI L   P  +I+ +DT   RY + + VAS++ I Q G+ + ++ + +  SG     T    P+NFY F    +D     +++  S++ FL+ H  DF +W+ +G+SY +AA E  L + L    ++ D  ++       PG+ Q  + LT+  D+ ++   ME V A      +  GA               KEL L   N F+ RA+ E IE  +P LI E+R        Q +VL L+  EK+ER    +AA++      VG+R V+K +    +P+VVHNG +DLLF+      PLP+    FK    A  P   YDT+L+++      K     GLE L + L + +    V+ V+AEGF+ Y      A  HEAGYDAY+TG +FA     + D G+  + +       M     F TN     +GEDR   +   +G +++  G+E        + D  + F D S +          WID      V+ G      +GGE L
Sbjct:    2 FEAAVPSAAFIAIDLEMTGITLNSNPFTKISASDTPDVRYGKMQKVASQYGIAQWGVCLFAEGQDSSGSGK---RTYEVRPFNFYCFPRAHNDSFSQQLLIDSSSMDFLRSHSFDFGRWMSKGISYLDAAGERNLAESLFPTPQQLDPLDM-------PGRPQHKIELTRQDDISYLANVMESVGAM-----LQSGA---------------KELVLPNCNTFLARAVRETIEARFPHLIVETRPGKSRWIPQRVVLNLTVEEKQEREERDKAAKRKVFREQVGLRRVWKMICKSRKPVVVHNGLYDLLFLYHRMEAPLPDGAAAFKKAKAALLPT-TYDTKLLASHHP--DKQFDSTGLEDLTEQLAERS-SLPVEFVMAEGFDTYRADAGNAKFHEAGYDAYVTGRLFA---YFMADPGIPDVSVHANYLHLMRSLWDFNTNVEGDLVGEDR-LILDTDKGIILWLHGFEHA----FNNTDFQRYFSDISGEAGDALKPQFRWIDQSSMLFVVPGGRAVTLDGGEGL 488          
BLAST of EWM30500.1 vs. NCBI_GenBank
Match: gi|1099050618|emb|CCM15767.1| (hypothetical protein, conserved [Leishmania guyanensis])

HSP 1 Score: 204.527 bits (519), Expect = 4.053e-54
Identity = 161/487 (33.06%), Postives = 240/487 (49.28%), Query Frame = 0
Query:   20 MDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTM--QERYAQQRVVASRFKIIQMGISIVSKVEKTGSS-----GNSASHTLVACPYNFYTFAADGDD---------VILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEEL-------IKRLDCERER---DEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESR----NNQVIVLRLSAAEKEERMAAREAARQSRRL-STVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLLGKS-LGDKGLEGLCQALVQETPEGGVDLVLAEGFEKY--------GGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLE------KLKMMVFSFRSMFVTNLGED 460
            M V +  F  V P  +  L  C+F AVD EM+GI   G P +T   T    E Y  +R+ ASR+ IIQ+G+ +  ++  + S+     G SA    VA P+NF  F    DD         V++S SA+ FL+ HGMDF +W+ +G+++ +A+RE  L       + + +   E    D E +   E     +  +   + A  E  ++++  V ++     + GG E++   + S AAR + EL LAR                YP L   SR    +  V+ L + + E+  + A R A ++ R+L  TVG RLVF  +    +P V HN F D LF+M+A    LPE+L  +KA  R  FP  ++DTR +++R DL  +S  G+  L GL +A +  +P   V+L L  GFE Y        GGS     AHEAGYDA +TG V      LLG+AG        +L   +  FRS++  +L  D
Sbjct:    1 MQVRRDNFPAVFPHFQKLLHACDFYAVDEEMTGI---GVPEVTETITFAPSETYHSKRLAASRYSIIQVGVCLFRRIPVSSSAAATGVGASAPRRYVAYPFNFLLFPQFADDYTAEERAGDVVVSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAAAVSQPETAAESLFTDAERLWLEEARQTAQALVGRVEAAWAEARQQKVGSV-SFLASVAVEGGKEAVLPVQASRAAREQLELELARE---------------YPQLSVRSRRAGPSGYVVTLAVLSPEEVSKHAWRAAQKERRQLLDTVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPC-MWDTRYLASRHDLFPRSRFGNISLGGLHEAYMGASPHCTVELPL--GFEGYDPVTLLGRGGSNA---AHEAGYDALMTGTVLLN---LLGEAGYTLETAPAELSHKLALFRSLYAVDLRSD 459          
BLAST of EWM30500.1 vs. NCBI_GenBank
Match: gi|731697235|ref|XP_010699223.1| (poly(A)-specific ribonuclease PARN, putative [Leishmania panamensis] >gi|685204278|gb|AIN98516.1| poly(A)-specific ribonuclease PARN, putative [Leishmania panamensis])

HSP 1 Score: 195.282 bits (495), Expect = 1.061e-50
Identity = 158/487 (32.44%), Postives = 238/487 (48.87%), Query Frame = 0
Query:   20 MDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTM--QERYAQQRVVASRFKIIQMGISIVSKVEKTGSSGNSA-----SHTLVACPYNFYTFAADGDD---------VILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEEL-------IKRLDCERER---DEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESR----NNQVIVLRLSAAEKEERMAAREAARQSRRL-STVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLLGKS-LGDKGLEGLCQALVQETPEGGVDLVLAEGFEKY--------GGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLE------KLKMMVFSFRSMFVTNLGED 460
            M V +  F  V P  +  L  C+F AVD EM+GI   G P +T   T    E Y  +R+ ASR+ IIQ+G+ +  ++  + S+  +          VA P+NF  F    DD         V++S SA+ FL+ HGMDF +W+ +G+++ +A+RE  L       + + +   E    D E +   E     +  +   + A  E  ++++  V ++     + GG E++   + S AAR + EL LAR                YP L   SR    +  V+ L + + E+  + A R A ++ R+L  TVG RLVF  +    +P V HN F D LF+M+A    LPE+L  +KA  R  FP  ++DTR +++R DL  +S  G+  L GL +A +  +P   V+L L  GFE Y        GGS     AHEAGYDA +TG V      LLG+AG        +L   +  FRS++  +L  D
Sbjct:    1 MQVRRDNFPAVFPHFQKLLHACDFYAVDEEMTGI---GVPEVTETITFAPSETYHSKRLAASRYSIIQVGVCLFRRIPVSSSAAAAGVGASAPRRYVAYPFNFLLFPQFADDYTAEERAGDVVVSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAAAVSQPETAAESLFTDAERLWLEEARQTAQALVGRVEAAWAEARQQKVGSV-SFLASVAVEGGKEAVLPVQASRAAREQLELELARE---------------YPQLSVRSRRAGPSGYVVTLAVLSPEEVSKHAWRAAQKERRQLLDTVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPC-MWDTRYLASRHDLFPRSRFGNISLGGLHEAYMGASPHCTVELPL--GFEGYDPVTLLGRGGSNA---AHEAGYDALMTGTVLLN---LLGEAGYTLETAPAELSHKLALFRSLYAVDLRSD 459          
BLAST of EWM30500.1 vs. NCBI_GenBank
Match: gi|154337822|ref|XP_001565137.1| (conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] >gi|134062184|emb|CAM36572.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904])

HSP 1 Score: 193.741 bits (491), Expect = 3.220e-50
Identity = 158/487 (32.44%), Postives = 237/487 (48.67%), Query Frame = 0
Query:   20 MDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTM--QERYAQQRVVASRFKIIQMGISIVSKVEKTGSSGNSAS-----HTLVACPYNFYTFAADGDD---------VILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEEL-------IKRLDCERER---DEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESR----NNQVIVLRLSAAEKEERMAAREAARQSRRL-STVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLLGKSLGDK-GLEGLCQALVQETPEGGVDLVLAEGFEKY--------GGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLE------KLKMMVFSFRSMFVTNLGED 460
            M V +  F  V P  +  L  C+F AVD EM+GI   G P +T   T    E Y  +R+ ASR+ IIQ+G+ +  ++  + S+  +          VA P+NF  F    DD         V++S SA+ FL+ HGMDF +W+ +G+++ +A+RE  L       + + +   E    D E +   E     +  +   + A  E  ++++  V ++     + GG E++   + S AAR + EL LAR                YP L   SR    +  V+ L + + E+  + A R A ++ R+L  TVG RLVF  +    +P V HN F D LF+M+A    LPE+L  +KA  R  FP  ++DTR +++R DL  +S  D   L GL +A +  +P   V+L L  GFE Y        GGS     AHEAGYDA +TG V      LLG+AG        +L   +  FRS++  +L  D
Sbjct:    1 MQVRRDNFPAVFPHFQKLLHTCDFYAVDEEMTGI---GVPEVTETITFAPSETYHSKRLAASRYSIIQVGVCLFRRIPVSSSAAAAGVGAPAPQRYVAYPFNFLLFPQFADDYTAEERAGDVVVSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAATVSQPETAAESLFTDAERLWLEEARQTAQALVGRVEAAWAEARQQKVGSV-SFLASVAVEGGKEAVLPVQASRAAREQLELELARE---------------YPQLSVRSRRAGPSGYVVTLAVLSPEEVSKHAWRAAQKERRQLLDTVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPC-MWDTRYLASRHDLFPRSRFDNISLGGLHEAYMGASPHCTVELPL--GFEGYDPVTLLGRGGSNA---AHEAGYDALMTGTVLLN---LLGEAGYTLETAPAELSHKLALFRSLYAVDLRSD 459          
BLAST of EWM30500.1 vs. NCBI_GenBank
Match: gi|1134886869|gb|OMJ84284.1| (hypothetical protein SteCoe_14629 [Stentor coeruleus])

HSP 1 Score: 187.578 bits (475), Expect = 8.428e-49
Identity = 136/462 (29.44%), Postives = 215/462 (46.54%), Query Frame = 0
Query:   17 PRTMDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTMQERYAQQRVVASRFKIIQMGISIVSKVEKTGSSGNSASHTLVACPYNFYTFAAD----GDDVILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEELIKRLDCERERDEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITES------RNNQVIVLRLSAAEKEERMAAREAARQSRRLSTVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTR----EDLLGKSLGDKGLEGLCQALVQETPEGGVDLVLAEGFEKYGGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLEKLKMMVFSFRSMFVTNL-GEDRDW 463
            P  MDV K  F + +     ++ + + +A+D E +G+   G+P   Y D+++ERY+  R +AS +KIIQ+G+S   + E              A PYNFY F ++       VIL + AI+FLK+H MDFN W   G+ Y N A+  +L K+L    E   E+I              LTK  +   M +    ++ W E +E                        +   NA++R+ L+  +   +  +  ES      R+  +++ +    + +E  A R   +  +    +G R +F  +    +P++VHNG  D+LF +A+F + LPEK  DFK  V   FP  +YDTR +  R     +   K    KGL+ L   L       G  +VL   FEKY     + +AHEAG+DA++TG  F ++  +   A +E  K  +  F+S F   L G+D  W
Sbjct:   14 PYIMDVQKNNFGEAVELFRESINHSQIIALDLEFTGVR--GRPE-GYLDSIEERYSGLRRIASTYKIIQVGLSCFIRKENQWE----------AHPYNFYVFPSEVPGYNQRVILEVGAINFLKEHHMDFNTWFYNGIPYLNEAQSRDLEKKLSEVNEESSEDII-------------LTKTYEQIKMNEICFRIEKWLESNE--------------------AHFEIQGLNAYLRKYLYNVVRKKFKGVFMESIKVEGSRDVTLVLKKADHNQIQELEAKRLVEKTEQFYEKIGFRRIFSMLVESKKPLIVHNGCVDILFTIASFQEELPEKYSDFKTLVNRLFPI-IYDTRYLLERIPGFYEEFDKIATAKGLKELYNFL---KGNSGSQIVLGNKFEKYYN---EKYAHEAGFDAFMTGICFLKLAEV--HAEIENFKNHLPLFKSFFSIRLDGDDIMW 420          
BLAST of EWM30500.1 vs. NCBI_GenBank
Match: gi|401422399|ref|XP_003875687.1| (conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] >gi|322491926|emb|CBZ27199.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103])

HSP 1 Score: 189.504 bits (480), Expect = 1.151e-48
Identity = 153/491 (31.16%), Postives = 230/491 (46.84%), Query Frame = 0
Query:   20 MDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTM--QERYAQQRVVASRFKIIQMGISIVSKVEKTGSS-----GNSASHTLVACPYNFYTFAADGDD---------VILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEELIKRLDCERERDEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVVKAWREESE--------------ILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESR----NNQVIVLRLSAAEKEERMAAREAARQSRR-LSTVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLL-GKSLGDKGLEGLCQALVQETPEGGVDLVLAEGFEKY--------GGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLE------KLKMMVFSFRSMFVTNLGED 460
            M V +  F  VLP  +  L+ C+F A+D EM+GI   G P +T   T    E Y  +R+ ASR+ IIQ+G+ +  ++  +  +     G  A+    A P+NF  F    DD         V++S SA+ FL+ HGMDF +W+ +G+++ +A+RE  L  RL        E   +P      +  +   +      +++      A   E+               + GG E++   + S AAR + EL L R                 P +   SR    +  V+ L + + E+  + A R A ++ R+ L TVG RLVF  +    +P V HN F D LF+M+A    LPE+L  +KA  R  FP  ++DTR +++R DL  G   G   L GL +A +  +P   V+L L  GFE Y        GGS+    AHEAGYDA +TG V      LLG+ G        +L   +  FRS++  +L  D
Sbjct:    1 MQVRRDNFPAVLPHFQELLRTCDFYAIDEEMTGI---GVPEVTETITFAPSETYHSKRLAASRYSIIQVGVCLFRRIPVSSGATAAGVGTPAAPRYAAYPFNFLLFPQFADDYTAEERAGDVVVSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAAAAASQSETTAEPLFTDAERAWLEEARQTAHALVRRVEAAWAAATSEARQQKAGRVSFLASVAVEGGKEAVLPVQASRAAREQLELELGREC---------------PQVSVRSRRTGSSGYVVTLAVLSPEEVSKNAWRRAQKERRQLLDTVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPC-MWDTRYLASRRDLFPGGRFGSISLSGLHEAYLGASPHCTVELPL--GFEGYDPVTLLGRGGSDA---AHEAGYDALMTGTVLLN---LLGEVGYTVETAPAELSQKLALFRSLYAVDLRSD 464          
BLAST of EWM30500.1 vs. NCBI_GenBank
Match: gi|146087155|ref|XP_001465741.1| (conserved hypothetical protein [Leishmania infantum JPCM5] >gi|398015556|ref|XP_003860967.1| hypothetical protein, conserved [Leishmania donovani] >gi|134069841|emb|CAM68168.1| conserved hypothetical protein [Leishmania infantum JPCM5] >gi|322499191|emb|CBZ34262.1| hypothetical protein, conserved [Leishmania donovani])

HSP 1 Score: 189.504 bits (480), Expect = 1.376e-48
Identity = 156/491 (31.77%), Postives = 229/491 (46.64%), Query Frame = 0
Query:   20 MDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTM--QERYAQQRVVASRFKIIQMGISIVSKVEKTGSS-----GNSASHTLVACPYNFYTFAADGDD---------VILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEELIKRLDCERERDEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVV----------KAWR----EESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESR----NNQVIVLRLSAAEKEERMAAREAARQSRRL-STVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLLGKS-LGDKGLEGLCQALVQETPEGGVDLVLAEGFEKY--------GGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLE------KLKMMVFSFRSMFVTNLGED 460
            M V +  F  V P  +  L+ C+F A+D EM+GI   G P +T   T    E Y  +R+ ASR+ IIQ+G+ +  ++  +  +     G  A     A P+NF  F    DD         V++S SA+ FL+ HGMDF +W+ +G+++ +A+RE  L  RL        E    P      +T +   +      +++               KA R        + GG E++   + S AAR + EL LAR                YP L   SR    +  V+ L + + E+  + A R A ++ R+L  TVG RLVF  +    +P V HN F D LF+M+A    LPE+L  +KA  R  FP  ++DTR +++R DL      G   L GL +A +  +P   V+L L  GFE Y        GGS+    AHEAGYDA +TG V      LLG+ G        +L   +  FRS++  +L  D
Sbjct:    1 MQVRRDNFPAVFPHFQELLRTCDFYAIDEEMTGI---GVPEVTETITSAPSETYHSKRLAASRYSIIQVGVCLFRRIPVSSGAAAAGVGTPAPPRYAAYPFNFLLFPQFADDYTAEERAGDVVVSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAAAAASQSETTAVPLFTDAERTWLEEARQTAQALVRRVEAAWAAATAEARQKKAGRVPFLASVVVEGGKEAVLPVQASRAAREQLELELARE---------------YPQLSVRSRRTGSSGYVVTLTVLSPEEVSKNAWRTAQKEWRQLLDTVGFRLVFTELVNSRKPCVGHNCFADWLFLMSAMDSTLPEQLPQWKARARELFPC-MWDTRYLASRRDLFPSGRFGSISLGGLHEAYLGASPHCIVELPL--GFEGYDPVTLLGRGGSDA---AHEAGYDALMTGTVLLN---LLGEVGYTLETAPAELSQKLALFRSLYAVDLRND 464          
BLAST of EWM30500.1 vs. NCBI_GenBank
Match: gi|1002456671|ref|XP_015662474.1| (putative mitochondrial Poly(A)-specific ribonuclease PARN [Leptomonas pyrrhocoris] >gi|928119579|gb|KPA84035.1| putative mitochondrial Poly(A)-specific ribonuclease PARN [Leptomonas pyrrhocoris])

HSP 1 Score: 187.578 bits (475), Expect = 8.077e-48
Identity = 164/506 (32.41%), Postives = 233/506 (46.05%), Query Frame = 0
Query:   20 MDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINLAGQPRITYADTM--QERYAQQRVVASRFKIIQMGISIVSKVEKTGSSGNSASHTLVACPYNFYTFAADGDD---------VILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEELIKRLDCERERDEEEIKKPEGGAPGKTQMNLTKPADVEFMKKQMEVVKAWREES--------------------------------EILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESR----NNQVIVLRLSAAEKEERMAAREAARQSRRL-STVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFPAGVYDTRLISTREDLLGKS-LGDKGLEGLCQALVQETPEGGVDLVLAEGFEKY-----------GGSERQAFAHEAGYDAYLTGAVFARMQVLLGDAGLE------KLKMMVFSFRSMFVTNLGE 459
            M V +  F  V P  +  L+ C+F A+D EM+GIN+   P +T + T   Q+ Y  +R+ ASR+ IIQ+G+ +  KV    SS +S +H  VA P+NF  F    DD         V++S SA+ FL+ HGMDF KW+ +G+++ +  RE  L  RL  + E         +G AP  +Q+     A    +    E  KAW EE                                 E+ GG E++   + S AAR    + L R                +P L   +R    +  V+ L + + E+  + A     R  RRL  T+G RLVF  +    +P V HN F D LF+M A    LPE+L  +K  VRA FP  ++DTR +++R+DL  +   G   L GL +A V  +P   V+L L  GFE Y           GGS     AHEAGYDA +TG V      LL +AG         L   +  FRS++  N+ E
Sbjct:    1 MQVRRDNFPAVFPHFKELLETCDFYAMDEEMTGINV---PEVTESITFSPQDAYNSKRLAASRYSIIQVGVCLFRKVP---SSSSSVAH-YVAHPFNFLLFPQFKDDYTAEERAGDVVVSPSALAFLRKHGMDFQKWVYQGMAFCDGPREAALRARLAAQDEA--------KGTAP-SSQVAAAAAAAATPLFTDAE--KAWVEEGQKAAAALVSRVESSWAAAVSASAGRRPFLSSIEVAGGKEAVLPVQTSRAAREHLGVLLQRD---------------FPQLSFRARRAGPSGYVVTLVMLSPEEVAKQAWLTGQRSERRLLDTLGFRLVFSELVRSKKPCVGHNCFADWLFLMHAMDGALPEQLPQWKERVRALFPR-LWDTRYVASRQDLFPRGRFGSISLGGLYEAYVGASPHCMVELPL--GFEGYDPMTLLGTSTAGGSGSDP-AHEAGYDALMTGTVLLN---LLAEAGYTLGTAPADLSNKIALFRSLYAVNVEE 466          
The following BLAST results are available for this feature:
BLAST of EWM30500.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113164|gb|EWM30500.1|0.000e+0100.00poly -specific ribonuclease parn [Nannochloropsis ... [more]
gi|1129213218|gb|OLQ14170.1|5.062e-5932.54Poly(A)-specific ribonuclease PARN [Symbiodinium m... [more]
gi|873229979|emb|CEM11778.1|1.636e-5631.00unnamed protein product [Vitrella brassicaformis C... [more]
gi|1099050618|emb|CCM15767.1|4.053e-5433.06hypothetical protein, conserved [Leishmania guyane... [more]
gi|731697235|ref|XP_010699223.1|1.061e-5032.44poly(A)-specific ribonuclease PARN, putative [Leis... [more]
gi|154337822|ref|XP_001565137.1|3.220e-5032.44conserved hypothetical protein [Leishmania brazili... [more]
gi|1134886869|gb|OMJ84284.1|8.428e-4929.44hypothetical protein SteCoe_14629 [Stentor coerule... [more]
gi|401422399|ref|XP_003875687.1|1.151e-4831.16conserved hypothetical protein [Leishmania mexican... [more]
gi|146087155|ref|XP_001465741.1|1.376e-4831.77conserved hypothetical protein [Leishmania infantu... [more]
gi|1002456671|ref|XP_015662474.1|8.077e-4832.41putative mitochondrial Poly(A)-specific ribonuclea... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna183rna183Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications