rna1823, rna1823 (mRNA) Nannochloropsis gaditana

Overview
Namerna1823
Unique Namerna1823
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1429
Alignment locationCM002458.1:239579..240190 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100133g15.1507.mrna
Orig protein idgnl|cribi|Naga_100133g15.1507
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:239579..240190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100133g15gene1752Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1823rna1823-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28853.1cds1819Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1823 ID=rna1823|Name=rna1823|organism=Nannochloropsis gaditana|type=mRNA|length=1429bp
ATGGATGGACCTGCTTCACCGCCAGCTTTCGGAATTTCAACAGTGAATAT
GCCTCTTACGGAGCATTCTAACATTGCGAACAGTCCTGAAGACTTGGCTG
CATCAGTTGAGAAAAAGCTGTCCCTTGGCAGCACTGCCGCCCAACCGGAG
GAGGATGTCGAATTGCAACCCTCTGACATGAAACTTCGGGAGTTGGCCGG
TGATATGGACGATGAGCTCCTCCTGAAGGACAATCCAGGGCGTTATGTTA
TTTTCCCCATCCAACATCAAGACATCTGGGATATGTACAAACAAGCCGAG
GCCTCCTTCTGGACGGCCGAAGAGCTCGACCTCGCCCACGACAAGACGGA
CTGGGAAAAGTTAACGGACAACGAACGTCACTTTGTCTCACACGTCCTCG
CCTTCTTCGCCGCCTCGGACGGCATTGTGAACGAGAATTTGGCCTTGAAT
TTCTCAAACGAGATCCAGTTACCGGAGGCTCGATGCTTCTACGGTTTCCA
AATCGCCATCGAAAATATTCACAGTGAGGTGTATTCCCTCCTTATTGACA
CTTACATCAAGAACCCATCCGAGAAACACAAGCTCTTAAACGCCATTGAG
ACCGTCCCTTGTGTCCGACGCAAGGCGCGTTGGGCGCTCCGGTGGTGCGA
CCGCAAGTACGCGTCTTTTGCCGAGCGCTTGATCGCCTTTGCAGCCGTGG
AGGGCATCTTTTTCTCCGGCTCCTTCTGCTCGATTTTCTGGTTGAAGAAG
CGGGGCCTGATGCCGGGCCTTGCTTTCTCCAACGAGCTCATCTCCCGGGA
TGAAGGCCTGCACTGCGACTTTGCCTGCCTCCTGTACACCAAATGCAAGA
TCAAATGCCCGGAGGAGCGGGTCAAGGCAATCATCCAAGACGCGGTGGCC
ATCGAGAAGCAATTCATCACCGACGCCTTGCCGGTGGAGCTTATTGGAAT
GAACAGTCGACTCATGTGTGAGTATATCGAGTTCTGCGCCGACCGCCTCC
TCTTAGCCTTGGGCTGCGAGAAGGCGTACCATTCCCGCAACCCCTTCGAT
TGGATGGACCTGATTTCCTTGCAGGGAAAGACGAATTTTTTCGAAAAGCG
AGTGGGTGAATATGCCAAGAGCGGCGTAGGTGGGAACATCGAGGATCAAG
TCTTCTCATTAGAGGTCGACTTCTAAATCAAGCCAACCCCCCAATTTCTT
CCCTCCCGCGCGCCGGACGGACCACTTGCATGTCAACTTCTCATATGCGG
AATGGGTGCGCTCCCTGAGAGTTCTTTGTTAGGTGTATATGGGCTCCAAT
GGACGTGGGAAGTGTATCAAACAAGAGGGTGATGTAGAGGGGATGAACGC
GAGGACCGCGTCCTTAGTTAGGTATTAGCAAAGCATATACCTATCATCAT
CCCGAAAGAAAAATTAAACACAAGGGAGA
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protein sequence of rna1823

>rna1823-protein ID=rna1823-protein|Name=rna1823|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MATKAQQKENLEKVTDYVEESVLDADRMAKAMSSLESDKSGARAAAAKLA
RTAYDESAYYLSFLKETAIHTIDLSWSRQLFIHQPRLDSGTLHILYLKSF
PIKRGSQISSFLKRFSSELEVTSEAAEQALKESGGDVVKALQRLLP
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mRNA from alignment at CM002458.1:239579..240190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1823 ID=rna1823|Name=rna1823|organism=Nannochloropsis gaditana|type=mRNA|length=612bp|location=Sequence derived from alignment at CM002458.1:239579..240190- (Nannochloropsis gaditana)
ATGGCGACCAAGGCGCAACAAAAAGAAAATCTTGAAAAAGTCACAGACTA
TGTTGAAGAGAGCGTGCTGGATGCGGACCGTATGGCAAAAGCCATGTCTT
CCCTGGAGAGTGACAAGAGCGGTGCACGGGCAGCAGCCGCTAAACTAGCG
AGGTACGGCGTGACTTCATTTTTTGCAAAATTTGGTAACGAGTGGAAAGC
AAATCATGGAAACACTCAGAACAGCATATGACGAGTCGGCGTACTATTTG
AGCTTTTTAAAAGAGACAGCTATCCACACTATTGACCTCTCATGGAGTCG
CCAGTTGTTTATTCACCAGCCAAGACTTGACAGTGGTACTCTCCACATCC
TGTATCTTAAGTCATTTCCTATAAAACGGGGGAGCCAGATCTCATCTTTT
CTGAAGAGATTTTCTAGTCGCTCATCTTCTCTCTTTTCTGAACTCCCTCT
TTTCTGTATTCTTCAAGTAGCGAGTGGGCTGCGGTCAAGGTGAATCCCAA
CGACGTCAAGTTTATCGTAGGCGAGTTGGAAGTGACCAGTGAAGCGGCAG
AACAGGCACTCAAAGAAAGCGGAGGAGATGTGGTAAAAGCGTTACAACGA
CTTCTACCCTGA
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Coding sequence (CDS) from alignment at CM002458.1:239579..240190-

>rna1823 ID=rna1823|Name=rna1823|organism=Nannochloropsis gaditana|type=CDS|length=1323bp|location=Sequence derived from alignment at CM002458.1:239579..240190- (Nannochloropsis gaditana)
GCGAGTTGGAAGTGACCAGTGAAGCGGCAGAACAGGCACTCAAAGAAAGC
GGAGGAGATGTGGTAAAAGCGTTACAACGACTTCTACCCTGAAACAGCAT
ATGACGAGTCGGCGTACTATTTGAGCTTTTTAAAAGAGACAGCTATCCAC
ACTATTGACCTCTCATGGAGTCGCCAGTTGTTTATTCACCAGCCAAGACT
TGACAGTGGTACTCTCCACATCCTGTATCTTAAGTCATTTCCTATAAAAC
GGGGGAGCCAGATCTCATCTTTTCTGAAGAGATTTTCTAATGGCGACCAA
GGCGCAACAAAAAGAAAATCTTGAAAAAGTCACAGACTATGTTGAAGAGA
GCGTGCTGGATGCGGACCGTATGGCAAAAGCCATGTCTTCCCTGGAGAGT
GACAAGAGCGGTGCACGGGCAGCAGCCGCTAAACTAGCGAGGCGAGTTGG
AAGTGACCAGTGAAGCGGCAGAACAGGCACTCAAAGAAAGCGGAGGAGAT
GTGGTAAAAGCGTTACAACGACTTCTACCCTGAAACAGCATATGACGAGT
CGGCGTACTATTTGAGCTTTTTAAAAGAGACAGCTATCCACACTATTGAC
CTCTCATGGAGTCGCCAGTTGTTTATTCACCAGCCAAGACTTGACAGTGG
TACTCTCCACATCCTGTATCTTAAGTCATTTCCTATAAAACGGGGGAGCC
AGATCTCATCTTTTCTGAAGAGATTTTCTAATGGCGACCAAGGCGCAACA
AAAAGAAAATCTTGAAAAAGTCACAGACTATGTTGAAGAGAGCGTGCTGG
ATGCGGACCGTATGGCAAAAGCCATGTCTTCCCTGGAGAGTGACAAGAGC
GGTGCACGGGCAGCAGCCGCTAAACTAGCGAGGCGAGTTGGAAGTGACCA
GTGAAGCGGCAGAACAGGCACTCAAAGAAAGCGGAGGAGATGTGGTAAAA
GCGTTACAACGACTTCTACCCTGAAACAGCATATGACGAGTCGGCGTACT
ATTTGAGCTTTTTAAAAGAGACAGCTATCCACACTATTGACCTCTCATGG
AGTCGCCAGTTGTTTATTCACCAGCCAAGACTTGACAGTGGTACTCTCCA
CATCCTGTATCTTAAGTCATTTCCTATAAAACGGGGGAGCCAGATCTCAT
CTTTTCTGAAGAGATTTTCTAATGGCGACCAAGGCGCAACAAAAAGAAAA
TCTTGAAAAAGTCACAGACTATGTTGAAGAGAGCGTGCTGGATGCGGACC
GTATGGCAAAAGCCATGTCTTCCCTGGAGAGTGACAAGAGCGGTGCACGG
GCAGCAGCCGCTAAACTAGCGAG
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Synonyms
Publications