EWM28853.1, cds1819 (CDS) Nannochloropsis gaditana

Overview
NameEWM28853.1
Unique Namecds1819
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:240039..240190 -
Alignment locationCM002458.1:239775..239971 -
Alignment locationCM002458.1:239579..239670 -

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Properties
Property NameValue
Protein idEWM28853.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100133g15.1507.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:240039..240190 -
CM002458.1supercontigCM002458.1:239775..239971 -
CM002458.1supercontigCM002458.1:239579..239670 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM28853.1 vs. NCBI_GenBank
Match: gi|585111280|gb|EWM28853.1| (hypothetical protein Naga_100133g15 [Nannochloropsis gaditana])

HSP 1 Score: 294.664 bits (753), Expect = 4.892e-101
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 
Query:    1 MATKAQQKENLEKVTDYVEESVLDADRMAKAMSSLESDKSGARAAAAKLARTAYDESAYYLSFLKETAIHTIDLSWSRQLFIHQPRLDSGTLHILYLKSFPIKRGSQISSFLKRFSSELEVTSEAAEQALKESGGDVVKALQRLLP 146
            MATKAQQKENLEKVTDYVEESVLDADRMAKAMSSLESDKSGARAAAAKLARTAYDESAYYLSFLKETAIHTIDLSWSRQLFIHQPRLDSGTLHILYLKSFPIKRGSQISSFLKRFSSELEVTSEAAEQALKESGGDVVKALQRLLP
Sbjct:    1 MATKAQQKENLEKVTDYVEESVLDADRMAKAMSSLESDKSGARAAAAKLARTAYDESAYYLSFLKETAIHTIDLSWSRQLFIHQPRLDSGTLHILYLKSFPIKRGSQISSFLKRFSSELEVTSEAAEQALKESGGDVVKALQRLLP 146
[Close]
BLAST of EWM28853.1 vs. NCBI_GenBank
Match: gi|553184764|ref|XP_005854143.1| (hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526] >gi|422294920|gb|EKU22220.1| hypothetical protein NGA_0204200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 84.3445 bits (207), Expect = 4.622e-17
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 
Query:    1 MATKAQQKENLEKVTDYVEESVLDADRMAKAMSSLESDKSG 41
            MATKAQQKENLEKVTDYVEESVLDADRMAKAMSSLESDKSG
Sbjct:  147 MATKAQQKENLEKVTDYVEESVLDADRMAKAMSSLESDKSG 187

HSP 2 Score: 60.4622 bits (145), Expect = 3.205e-8
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0 
Query:  112 LKRFSSELEVTSEAAEQALKESGGDVVKALQRLLP 146
            +K    ELEVTSEAAEQALKESGGDVVKALQRLLP
Sbjct:  210 VKFIVGELEVTSEAAEQALKESGGDVVKALQRLLP 244
The following BLAST results are available for this feature:
BLAST of EWM28853.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111280|gb|EWM28853.1|4.892e-101100.00hypothetical protein Naga_100133g15 [Nannochlorops... [more]
gi|553184764|ref|XP_005854143.1|4.622e-17100.00hypothetical protein NGA_0204200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1823rna1823Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications