|
|
Properties
| Property Name | Value |
|---|
| Product | nadh ubiquinone oxidoreductase b22-like subunit |
| Orig transcript id | gnl|cribi|Naga_100133g10.1513.mrna |
| Orig protein id | gnl|cribi|Naga_100133g10.1513 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:227508..228792 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1819 ID=rna1819|Name=rna1819|organism=Nannochloropsis gaditana|type=mRNA|length=2688bp
TTCCACATATGCCTACAATGGTGGGCCACTGTCGCTGTTGTGGGCCAACG
CTGGCCTTGTCCACAACATTGTGCTTGCGATTAGTCATGGTATCCACGCC
CCTCCGAGTCGCTGTCGCTAGAACCGGAGGTAGTTGACGTGGGAAGGTTT
TAAAGAAAGCATTTTACGAGAGGTAACGCATGGAATGATAAGGTTGGTTA
AAACGGAAGCAGAACCTCATGCTCTCCTTTTTTTGGGGGGGGGGACAGGT
TTGCCCGAGCCCAGCTTTTAGTACTTCCCAAAACGCTGCCTTGGTGACGT
GTGAAGAGGGAGCAAACGGGCCGCTTGCTGGGGAGTAGAGGATCCCTTAT
ACGCGGGGGATGATAAAGAGTACTCGACGCGGTCTCGGCATCAATCAGCG
TCCTTCTTTCCTGCTTGTCGTCCTTCGTTGCATAACTTGGTCTCTAGGCA
GCGTGCACGGGCCCATCCCTGCCTCCTCCTTCACCCCTTCCTTGGGCTGT
CCTGGGAGTCTCGCACGTTCCGACCCCCTCCGTGGCGCCCTCGGAGGCGC
TTTACCTTCTCCGTGTCGGCCGTTTTTTGGTTGGAGTAAAGCAAGCGCAG
CCCTCCACGCGTCTGGTTTAGGTTGGATTTCGCCCGCGCTTCCCCGCTCC
ATCACCTCGACCGCGCCCTTCTCTTTTGGGGGGGGGCGTAAAGCGCAGGA
AGCCTCCTTCACCTCTTTCAACGGTGTGCCCGGGGGTCCTTCGCGCCTTT
TTCACGTCAAGGGTCGAACGTCCGTGCGTGCGCTTTCTTCCGCTTCGCCC
TCGGGCCCCGTCTCCACGATGATTTGCGCCATCCCCCCCGACGTCCAGGC
CGCTCTCCGCACCCTGTACACAGCCCCACCTGCGAGCCAACCCTCCCGTC
CTCCAACCCCGCCCTCCCGCCTACAGATATGCGTGTGCACCACAGGTGCC
GGTGGGGCCCTTGGTCAATGGATGCTGGGCACGGCGGGCGCGAGCAATGT
GCTTCTGGAGCTAGCGTCTCCCTATGCGAAGGGGGCGATTGCCGTGTACT
TGGCGCATGGAAGGCGCGAGCCCTCGCTTCCTCCCTCCGACGGCTCCTAC
TGCTCGGCATCGACGGCGTCTGAACTGGCACGAGCCGCGTACCACCGGGC
GGTCGCACTCGCGGTGGGAGGGGCGGAGGGAGGGAAAGACAGCGGGGAGG
AAGGCGGGAGGGAGGGCCAAGTCCGCGTGCTGCGGGAGGGGACATTCGTG
GGGGTCGCGTGCACAGCCTCCGTGGTGTCGAGCCAGGCAAAAAGGGGGGA
GCATCGTGCTCACATTGCCACGTACAGCCTGGACGTGGAAGGTCGGGTCC
TCGCCCGCGGCTACTCCCTGTCGTTGACCAAGCAGGCCCGGAGCCGCGTG
GAGGAGGACATTGCCGTCAGTAAAGCCACCCTGGCGGCACTGATGGAGGC
TACCCATCCGCTAGGGCCCGATGCCTCCTCTCCGTCTTTCTCGTGGCGGG
AATTCCTGCCCGTCGGTGTCGGGGAGGGAGGATTAGGGGGGGAGGATCGA
CTTGTCGAAGGAGAGGACGAGGCAGGGCGGGAGGAAGGGGACGCCTTGGA
TGCACTGATGGTCCACCAGACGGTGGATCGAGTCGTCTTTATTCCATGCC
CCCAGGCGCCCAACGGCTTCCGCTTGTACCCGTCTTCCACTACCGTCTTC
CCTGCCTCAACCCCGCCCTCCCCCCCGGCTTTCTCCCCTCTCATCGTCTA
CCCTGGCTCCTTCAATCCTCTGCACGAAGGCCACATTCAACTTGCCCGCG
CCGCCCAAACGCTTCTGGCCTCCCACCCGTCCTCCGCCTCTCCTTCTGTT
CCTTCTTTTTCCCCCCTTGTTCTCTTTGAAATCTCCACCTCCAATGCCGA
TAAGGGCATGACGGAAAGAAGTGCCCTCATGCCTCGCTTCTCGCAATTTG
CCTCTCTCTCTTCTGCCCTACTTGTCCTTACCCGTGCCCCACTTTTTCTC
GAAAAAGCTCGAATTTTCCCCCATTCTTGCTTCTTGATTGGGGCGGACAC
TGCCAAACGGCTGTTGCAGCCTAAATACTACGAAACGGCAGAGAGGGAAG
GAGGAGGGAAAGGAGGGCGGGATGCCCTCCTTCTGGCCTTGAACGAAATA
AGGATGCAGGGCTGTCGTTTCATCGTGGGGGGCAGGAAAGTGAAAGGGAG
CGATGGGAAAGCAGACTTCCTGACGTTGGAAGCGGTGTTAGAGGAAGCGC
GGCCGCTGGCTCTCCCCCCGTCAGTGCTTGAGATGTTTCTTGGTCTGAGT
GAGAAGCAATTTCGAATCGACCTCAGTTCCACAGAGATCAGGGCGCGCGA
AAGAATGAAAAACGTCTGAGCAAAGACGGGAGGGTTGGGAGTGAGACCCC
ACCAAGCGTACGGCGGATGATGAGCTATTGTCTCTCGACAAGAATGTTCC
GAGCATAAACCTCCGGCTCTTATGCTCGGGCTCGCGGATTTTTCCGCCTA
TCCTGTTGGACCTCCTTTGCACGCCTCGAGATCCTAGTCATCAACTCTGC
GCTTTATTAATACGGCTTGATGCGCGTGAATATGGATAGTCCTTTTATGT
CAATTTTCTTGGTATTTTGCTGTGGCTAAAACATGACCTGACCAATTAAG
GATTAATGTTTGTACGTCAGTCATATTGCATCATCTCT back to topprotein sequence of rna1819 >rna1819-protein ID=rna1819-protein|Name=rna1819|organism=Nannochloropsis gaditana|type=polypeptide|length=266bp
MANASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSE
AGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGT
LFMRNPPLPFDVVFAGHVPEDVKEEPLNIDMTPVVKGEKGDGRVLVDSAN
KAAGEHDLSICKGARMEKAWRPAMPFQGKETPIKWQKRRHARWHFSGVLK
IVFLATPTGKGVAVEPRKVGRGACVQAHMSLVAQRVGLAFVFFCFLAGLF
DEGGGSKTPPPLPTAT back to topmRNA from alignment at CM002458.1:227508..228792+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1819 ID=rna1819|Name=rna1819|organism=Nannochloropsis gaditana|type=mRNA|length=1285bp|location=Sequence derived from alignment at CM002458.1:227508..228792+ (Nannochloropsis gaditana)
ATGGCCAATGCATCCATGCGAGCCGCTGCAGCGCAGTATATCAACCCGGC
GCCGCAGCTTTCTCACAAGACGATAGTCGTTCGGCTCTATCGCAAGAGCC
TGAAGACTTTAAATTCTTGGTAGGTGCTTCTAGGCATGGCTTCATGCCCA
ACCCCATCCTCTCACATGTGCTCTGCGCATTTGTGTGGTCGTTGTTTTGT
GCATGCGAAGTTATGTCTTGAATGTTCCCTGTGCGAACCGCCAGGCGCGG
CAAGGAAACCTGGAGCGTGACGGccacctttgcctccctcccgcattACT
TTCTTACATGGGTTGCCTTTCCAACCTCTCAAACGATTTCCATGCCCTCG
ATATTTTCTTATCGTACCCTCATAGCCTATCTCCGCTAGATACACGCTAA
AAGCGTTgtctgttcctcctttccccgctACCTGTTCAATGTttgcccct
tttctttccttcccctccccatctcttGACCTCTTCTGTCATGCCACGta
ttcgtcttcctcccttcctaatCCTGTCTGcaattcctttcccccgcagG
GCTATCGACCGGGAAGTTTTCCTCTCCGAGGCCGGCAAACTCCGAGCCTC
CTTTTCGGCCAATGCACACTTGGCACCCGAGTCAGGGAAAGTGAAGGCGT
TGGTCCGAAAGGCCCACGAAGAGCTTTTGCGTTACTCCCACCCCGACAAA
TACATCCTTCCCTGGATGCCAGGCGGGACTCTCTTCATGCGGaacccccc
cttgcccttcgACGTGGTGTTTGCCGGTCACGTCCctgaggacgtgaagg
aggagccgtTGAACATCGACATGACCCCCGTCgtgaagggagagaagggc
gacGGTCGTGTTCTGGTGGACAGCGCCAACAAGGCGTATTTCtgaaaggg
aggcgaggggggaggaaagggacatGTGTATCTAGgtagggcgggggagc
aTGATTTGAGTATCTGCAAAGGAGCGAGAATGGAAAAGGCATGGAGGCCA
GCGATGCCATTCCAAGGGAAAGAAACACCCATCAAATggcagaaaaggag
gcacgCTCGCTGGCACTTTTCAGGGGTCTTGAAAATAGTCTTTCTGGCAA
CGccgacggggaagggagtggcGGTAGAGCCAAGAAaagtgggaagagga
gcatgTGTACAAGCGCACATGAGCCTTGTCGCCCAGCGTGTTGGTCTCGC
CTTCGTTTTTTTCTGTTTTTTAGCGGGGCTCTttgatgaaggaggaggaa
gcaagacgcctccccccctcccgaccgcAACCTAA back to topCoding sequence (CDS) from alignment at CM002458.1:227508..228792+ >rna1819 ID=rna1819|Name=rna1819|organism=Nannochloropsis gaditana|type=CDS|length=2403bp|location=Sequence derived from alignment at CM002458.1:227508..228792+ (Nannochloropsis gaditana)
ATGGCCAATGCATCCATGCGAGCCGCTGCAGCGCAGTATATCAACCCGGC
GCCGCAGCTTTCTCACAAGACGATAGTCGTTCGGCTCTATCGCAAGAGCC
TGAAGACTTTAAATTCTTGGGCTATCGACCGGGAAGTTTTCCTCTCCGAG
GCCGGCAAACTCCGAGCCTCCTTTTCGGCCAATGCACACTTGGCACCCGA
GTCAGGGAAAGTGAAGGCGTTGGTCCGAAAGGCCCACGAAGAGCTTTTGC
GTTACTCCCACCCCGACAAATACATCCTTCCCTGGATGCCAGGCGGGACT
CTCTTCATGCGGaacccccccttgcccttcgACGTGGTGTTTGCCGGTCA
CGTCCctgaggacgtgaaggaggagccgtTGAACATCGACATGACCCCCG
TCgtgaagggagagaagggcgacGGTCGTGTTCTGGTGGACAGCGCCAAC
AAGGCggcgggggagcaTGATTTGAGTATCTGCAAAGGAGCGAGAATGGA
AAAGGCATGGAGGCCAGCGATGCCATTCCAAGGGAAAGAAACACCCATCA
AATggcagaaaaggaggcacgCTCGCTGGCACTTTTCAGGGGTCTTGAAA
ATAGTCTTTCTGGCAACGccgacggggaagggagtggcGGTAGAGCCAAG
AAaagtgggaagaggagcatgTGTACAAGCGCACATGAGCCTTGTCGCCC
AGCGTGTTGGTCTCGCCTTCGTTTTTTTCTGTTTTTTAGCGGGGCTCTtt
gatgaaggaggaggaagcaagacgcctccccccctcccgaccgcAACCTA
AATGGCCAATGCATCCATGCGAGCCGCTGCAGCGCAGTATATCAACCCGG
CGCCGCAGCTTTCTCACAAGACGATAGTCGTTCGGCTCTATCGCAAGAGC
CTGAAGACTTTAAATTCTTGGGCTATCGACCGGGAAGTTTTCCTCTCCGA
GGCCGGCAAACTCCGAGCCTCCTTTTCGGCCAATGCACACTTGGCACCCG
AGTCAGGGAAAGTGAAGGCGTTGGTCCGAAAGGCCCACGAAGAGCTTTTG
CGTTACTCCCACCCCGACAAATACATCCTTCCCTGGATGCCAGGCGGGAC
TCTCTTCATGCGGaacccccccttgcccttcgACGTGGTGTTTGCCGGTC
ACGTCCctgaggacgtgaaggaggagccgtTGAACATCGACATGACCCCC
GTCgtgaagggagagaagggcgacGGTCGTGTTCTGGTGGACAGCGCCAA
CAAGGCggcgggggagcaTGATTTGAGTATCTGCAAAGGAGCGAGAATGG
AAAAGGCATGGAGGCCAGCGATGCCATTCCAAGGGAAAGAAACACCCATC
AAATggcagaaaaggaggcacgCTCGCTGGCACTTTTCAGGGGTCTTGAA
AATAGTCTTTCTGGCAACGccgacggggaagggagtggcGGTAGAGCCAA
GAAaagtgggaagaggagcatgTGTACAAGCGCACATGAGCCTTGTCGCC
CAGCGTGTTGGTCTCGCCTTCGTTTTTTTCTGTTTTTTAGCGGGGCTCTt
tgatgaaggaggaggaagcaagacgcctccccccctcccgaccgcAACCT
AAATGGCCAATGCATCCATGCGAGCCGCTGCAGCGCAGTATATCAACCCG
GCGCCGCAGCTTTCTCACAAGACGATAGTCGTTCGGCTCTATCGCAAGAG
CCTGAAGACTTTAAATTCTTGGGCTATCGACCGGGAAGTTTTCCTCTCCG
AGGCCGGCAAACTCCGAGCCTCCTTTTCGGCCAATGCACACTTGGCACCC
GAGTCAGGGAAAGTGAAGGCGTTGGTCCGAAAGGCCCACGAAGAGCTTTT
GCGTTACTCCCACCCCGACAAATACATCCTTCCCTGGATGCCAGGCGGGA
CTCTCTTCATGCGGaacccccccttgcccttcgACGTGGTGTTTGCCGGT
CACGTCCctgaggacgtgaaggaggagccgtTGAACATCGACATGACCCC
CGTCgtgaagggagagaagggcgacGGTCGTGTTCTGGTGGACAGCGCCA
ACAAGGCggcgggggagcaTGATTTGAGTATCTGCAAAGGAGCGAGAATG
GAAAAGGCATGGAGGCCAGCGATGCCATTCCAAGGGAAAGAAACACCCAT
CAAATggcagaaaaggaggcacgCTCGCTGGCACTTTTCAGGGGTCTTGA
AAATAGTCTTTCTGGCAACGccgacggggaagggagtggcGGTAGAGCCA
AGAAaagtgggaagaggagcatgTGTACAAGCGCACATGAGCCTTGTCGC
CCAGCGTGTTGGTCTCGCCTTCGTTTTTTTCTGTTTTTTAGCGGGGCTCT
ttgatgaaggaggaggaagcaagacgcctccccccctcccgaccgcAACC
TAA back to top
|