EWM28859.1, cds1815 (CDS) Nannochloropsis gaditana

Overview
NameEWM28859.1
Unique Namecds1815
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:227508..227626 +
Alignment locationCM002458.1:228057..228392 +
Alignment locationCM002458.1:228447..228792 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28859.1
Productnadh ubiquinone oxidoreductase b22-like subunit
Orig transcript idgnl|cribi|Naga_100133g10.1513.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:227508..227626 +
CM002458.1supercontigCM002458.1:228057..228392 +
CM002458.1supercontigCM002458.1:228447..228792 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|585111286|gb|EWM28859.1| (nadh ubiquinone oxidoreductase b22-like subunit [Nannochloropsis gaditana])

HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query:    1 MANASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEEPLNIDMTPVVKGEKGDGRVLVDSANKAAGEHDLSICKGARMEKAWRPAMPFQGKETPIKWQKRRHARWHFSGVLKIVFLATPTGKGVAVEPRKVGRGACVQAHMSLVAQRVGLAFVFFCFLAGLFDEGGGSKTPPPLPTAT 266
            MANASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEEPLNIDMTPVVKGEKGDGRVLVDSANKAAGEHDLSICKGARMEKAWRPAMPFQGKETPIKWQKRRHARWHFSGVLKIVFLATPTGKGVAVEPRKVGRGACVQAHMSLVAQRVGLAFVFFCFLAGLFDEGGGSKTPPPLPTAT
Sbjct:    1 MANASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEEPLNIDMTPVVKGEKGDGRVLVDSANKAAGEHDLSICKGARMEKAWRPAMPFQGKETPIKWQKRRHARWHFSGVLKIVFLATPTGKGVAVEPRKVGRGACVQAHMSLVAQRVGLAFVFFCFLAGLFDEGGGSKTPPPLPTAT 266          
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|695432436|ref|XP_009530932.1| (hypothetical protein PHYSODRAFT_562177 [Phytophthora sojae] >gi|348673684|gb|EGZ13503.1| hypothetical protein PHYSODRAFT_562177 [Phytophthora sojae])

HSP 1 Score: 154.066 bits (388), Expect = 1.893e-43
Identity = 74/136 (54.41%), Postives = 97/136 (71.32%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPV 134
            N + R    +++  APQLSHK  V RLY++SLKTL+SW IDR ++  EA K+RA F AN  L PESG  K LVR+A E++  Y+HPD+YI  +MPGG+LFMRN P+P DV F  G++P+DV+  PL   NIDMTP+
Sbjct:   11 NKTFREVVGRFVGAAPQLSHKQKVQRLYKQSLKTLDSWVIDRRLWNEEATKIRAQFDANRELDPESGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGNIPDDVELSPLEGINIDMTPL 146          
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|675204755|ref|XP_008911262.1| (hypothetical protein PPTG_15717 [Phytophthora parasitica INRA-310] >gi|566015075|gb|ETI37986.1| hypothetical protein F443_16169 [Phytophthora parasitica P1569] >gi|567952506|gb|ETK78181.1| hypothetical protein L915_15725 [Phytophthora parasitica] >gi|567981179|gb|ETL31622.1| hypothetical protein L916_15616 [Phytophthora parasitica] >gi|568010678|gb|ETL84863.1| hypothetical protein L917_15436 [Phytophthora parasitica] >gi|568040571|gb|ETM38020.1| hypothetical protein L914_15573 [Phytophthora parasitica] >gi|568088632|gb|ETN03489.1| hypothetical protein PPTG_15717 [Phytophthora parasitica INRA-310] >gi|570318817|gb|ETO66765.1| hypothetical protein F444_16152 [Phytophthora parasitica P1976] >gi|570942611|gb|ETP07868.1| hypothetical protein F441_15997 [Phytophthora parasitica CJ01A1] >gi|570973222|gb|ETP35903.1| hypothetical protein F442_16020 [Phytophthora parasitica P10297] >gi|970633433|gb|KUF79103.1| NADH dehydrogenase 1 beta subcomplex subunit 9 [Phytophthora nicotianae])

HSP 1 Score: 153.68 bits (387), Expect = 2.856e-43
Identity = 74/136 (54.41%), Postives = 97/136 (71.32%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPV 134
            N + R    +++   PQLSHK  V RLY++SLKTL+SW IDR ++  EA K+RA F AN+ L PESG  K LVR+A E++  Y+HPD+YI  +MPGG+LFMRN P+P DV F  G++PEDV+  PL   NIDMTP+
Sbjct:   11 NKTFREVVGRFVGAPPQLSHKQKVQRLYKQSLKTLDSWVIDRRLWNEEATKIRAEFDANSKLDPESGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGNIPEDVELSPLEGINIDMTPL 146          
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|301108081|ref|XP_002903122.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097494|gb|EEY55546.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 153.68 bits (387), Expect = 3.081e-43
Identity = 74/136 (54.41%), Postives = 97/136 (71.32%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPV 134
            N + R    +++   PQLSHK  V R+Y+KSLKTL+SW IDR ++  EA K+RA F AN+ L PESG  K LVR+A E++  Y+HPD+YI  +MPGG+LFMRN P+P DV F  G++PEDV+  PL   NIDMTP+
Sbjct:   11 NKTFREVVGRFVGAPPQLSHKQKVQRVYKKSLKTLDSWVIDRRLWNEEATKIRAEFDANSKLDPESGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGNIPEDVELSPLEGINIDMTPL 146          
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|953497496|emb|CEG40983.1| (NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Plasmopara halstedii])

HSP 1 Score: 153.295 bits (386), Expect = 4.548e-43
Identity = 78/153 (50.98%), Postives = 102/153 (66.67%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPVVKGEKGDGRVLVDSANK 151
            N + R    +++N  PQLSHK  V RLY+KSLKTL+SW IDR ++  EA K+RA F AN  L P+SG  K LVR+A E++  Y+HPD+YI  +MPGG+L+MRN P+P DV F  G +P+DV+  PL   NIDMTP+   E     V VD + K
Sbjct:   11 NQTFREVVGRFVNAPPQLSHKQTVQRLYKKSLKTLDSWIIDRRLWNEEATKIRAEFDANKKLDPQSGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLYMRNAPIPLDVCFPDGIIPDDVEVSPLEGINIDMTPLPAKET----VFVDFSKK 159          
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|325187848|emb|CCA22391.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 147.902 bits (372), Expect = 4.255e-41
Identity = 73/154 (47.40%), Postives = 102/154 (66.23%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEEP---LNIDMTPVVKGEKGDGRVLVDSANKAA 153
            N ++R   A ++ P   L+H  +V RLY++SLKTL SW IDR ++  EA K+RA F AN HLAPES + K  +++A+E+L +Y+HPD+Y+  +MPGGT FMRN PLP +V F   VPEDV+  P   +NID TP+   E     V VD + K++
Sbjct:    2 NQTLREVVAHFVAPPKNLTHTQVVQRLYKQSLKTLESWVIDRRLWNEEAVKVRAQFDANRHLAPESDQAKFAIKEANEKLKKYTHPDRYVFNYMPGGTKFMRNAPLPLEVCFPNGVPEDVEVSPVEAVNIDGTPLPPKET----VFVDFSKKSS 151          
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|1214699873|gb|OWZ12573.1| (Nadh ubiquinone oxidoreductase [Phytophthora megakarya])

HSP 1 Score: 146.747 bits (369), Expect = 1.737e-40
Identity = 75/153 (49.02%), Postives = 101/153 (66.01%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPVVKGEKGDGRVLVDSANK 151
            N ++R    +++    QLSHK  V RLY+ SLKTL+SW IDR ++  EA K+RA F AN+ L PESG  K LVR+A +++  Y+HPD+YI  +MPGG+L+MRN P+P DV F  G +P+DV+  PL   NIDMTP+   E     V VD + K
Sbjct:   11 NKTLREVVGRFVGAPQQLSHKQKVQRLYKMSLKTLDSWVIDRRLWNEEATKIRAEFDANSALDPESGLAKRLVREAQDKVDHYTHPDRYIFNYMPGGSLYMRNAPIPLDVCFPDGEIPDDVELSPLEAINIDMTPLPAKET----VFVDFSKK 159          
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|299115446|emb|CBN75611.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.954 bits (328), Expect = 2.631e-34
Identity = 68/156 (43.59%), Postives = 98/156 (62.82%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEE------PLNIDMTPVVKGEKGD-GRVLVDSANK 151
            N++ R AAAQ+I+    ++HK  V RLYR SLK L+SWAIDR +FL EA K+RASF   +   P+S + KAL+R A++ +  + H D+YI P+MP G+ FMRNPP P +  +   +P++V  E       + +DM+   +G     G+VLVD A K
Sbjct:    6 NSTFRGAAAQFISKQHPITHKQEVCRLYRASLKLLDSWAIDRTIFLEEATKVRASFDEGSKCGPDSARAKALMRGAYKMIDEHVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDEVLAEFKGVPMEVEVDMSRPEEGRMSKAGQVLVDLATK 161          
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|1173948824|gb|OQR96910.1| (hypothetical protein THRCLA_21974 [Thraustotheca clavata])

HSP 1 Score: 123.25 bits (308), Expect = 2.108e-31
Identity = 69/155 (44.52%), Postives = 95/155 (61.29%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPVVKGEKGDGRVLVDSANKAA 153
            N +   AA       P LSHK  V RLY++SLK L+SW IDR ++  EA  +RA F+AN H++  +   + L+R A  +L  Y+HPD Y++  MPGG+ FMRNPPLP +V F  G +P+DV+  PL   NID TP  + E  +  VLVD   K++
Sbjct:    6 NHAFLQAALSVRGATPSLSHKQQVTRLYKRSLKLLDSWVIDRRLWNEEATLIRAQFNANMHVSQTAA--ERLIRDAQAKLNDYTHPDPYVVVHMPGGSKFMRNPPLPLEVCFPDGIIPDDVEVSPLKAINIDTTPYREDELKET-VLVDFTTKSS 157          
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|669145896|ref|XP_008608510.1| (hypothetical protein SDRG_04612 [Saprolegnia diclina VS20] >gi|813198266|ref|XP_012208716.1| hypothetical protein SPRG_22330 [Saprolegnia parasitica CBS 223.65] >gi|530739941|gb|EQC38183.1| hypothetical protein SDRG_04612 [Saprolegnia diclina VS20] >gi|641526202|gb|KDO20587.1| hypothetical protein SPRG_22330 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 122.865 bits (307), Expect = 2.225e-31
Identity = 70/155 (45.16%), Postives = 96/155 (61.94%), Query Frame = 0
Query:    3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPVVKGEKGDGRVLVDSANKAA 153
            N +   AA      AP LSHK  V RLY++SLK L+SWAIDR ++  EA K+RA F AN   +  +   + L+R A  +L+ ++HPD Y++  MPGG+ FMRNPPLP +V F  G +P+DV+  PL   NID TP  + E  +  VLVD   K++
Sbjct:    6 NHAFLQAALSVRGAAPTLSHKQQVTRLYKRSLKLLDSWAIDRRLWNDEATKIRAQFDANKFAS--AAVAERLIRDAQAKLVEFTHPDPYVVVHMPGGSKFMRNPPLPLEVCFPDGVIPDDVEVSPLKAINIDTTPYREDELKET-VLVDFPTKSS 157          
The following BLAST results are available for this feature:
BLAST of EWM28859.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111286|gb|EWM28859.1|0.000e+0100.00nadh ubiquinone oxidoreductase b22-like subunit [N... [more]
gi|695432436|ref|XP_009530932.1|1.893e-4354.41hypothetical protein PHYSODRAFT_562177 [Phytophtho... [more]
gi|675204755|ref|XP_008911262.1|2.856e-4354.41hypothetical protein PPTG_15717 [Phytophthora para... [more]
gi|301108081|ref|XP_002903122.1|3.081e-4354.41conserved hypothetical protein [Phytophthora infes... [more]
gi|953497496|emb|CEG40983.1|4.548e-4350.98NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit... [more]
gi|325187848|emb|CCA22391.1|4.255e-4147.40conserved hypothetical protein [Albugo laibachii N... [more]
gi|1214699873|gb|OWZ12573.1|1.737e-4049.02Nadh ubiquinone oxidoreductase [Phytophthora megak... [more]
gi|299115446|emb|CBN75611.1|2.631e-3443.59conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173948824|gb|OQR96910.1|2.108e-3144.52hypothetical protein THRCLA_21974 [Thraustotheca c... [more]
gi|669145896|ref|XP_008608510.1|2.225e-3145.16hypothetical protein SDRG_04612 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1819rna1819Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications