EWM28859.1, cds1815 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|585111286|gb|EWM28859.1| (nadh ubiquinone oxidoreductase b22-like subunit [Nannochloropsis gaditana]) HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0 Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query: 1 MANASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEEPLNIDMTPVVKGEKGDGRVLVDSANKAAGEHDLSICKGARMEKAWRPAMPFQGKETPIKWQKRRHARWHFSGVLKIVFLATPTGKGVAVEPRKVGRGACVQAHMSLVAQRVGLAFVFFCFLAGLFDEGGGSKTPPPLPTAT 266
MANASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEEPLNIDMTPVVKGEKGDGRVLVDSANKAAGEHDLSICKGARMEKAWRPAMPFQGKETPIKWQKRRHARWHFSGVLKIVFLATPTGKGVAVEPRKVGRGACVQAHMSLVAQRVGLAFVFFCFLAGLFDEGGGSKTPPPLPTAT
Sbjct: 1 MANASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEEPLNIDMTPVVKGEKGDGRVLVDSANKAAGEHDLSICKGARMEKAWRPAMPFQGKETPIKWQKRRHARWHFSGVLKIVFLATPTGKGVAVEPRKVGRGACVQAHMSLVAQRVGLAFVFFCFLAGLFDEGGGSKTPPPLPTAT 266
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|695432436|ref|XP_009530932.1| (hypothetical protein PHYSODRAFT_562177 [Phytophthora sojae] >gi|348673684|gb|EGZ13503.1| hypothetical protein PHYSODRAFT_562177 [Phytophthora sojae]) HSP 1 Score: 154.066 bits (388), Expect = 1.893e-43 Identity = 74/136 (54.41%), Postives = 97/136 (71.32%), Query Frame = 0
Query: 3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPV 134
N + R +++ APQLSHK V RLY++SLKTL+SW IDR ++ EA K+RA F AN L PESG K LVR+A E++ Y+HPD+YI +MPGG+LFMRN P+P DV F G++P+DV+ PL NIDMTP+
Sbjct: 11 NKTFREVVGRFVGAAPQLSHKQKVQRLYKQSLKTLDSWVIDRRLWNEEATKIRAQFDANRELDPESGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGNIPDDVELSPLEGINIDMTPL 146
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|675204755|ref|XP_008911262.1| (hypothetical protein PPTG_15717 [Phytophthora parasitica INRA-310] >gi|566015075|gb|ETI37986.1| hypothetical protein F443_16169 [Phytophthora parasitica P1569] >gi|567952506|gb|ETK78181.1| hypothetical protein L915_15725 [Phytophthora parasitica] >gi|567981179|gb|ETL31622.1| hypothetical protein L916_15616 [Phytophthora parasitica] >gi|568010678|gb|ETL84863.1| hypothetical protein L917_15436 [Phytophthora parasitica] >gi|568040571|gb|ETM38020.1| hypothetical protein L914_15573 [Phytophthora parasitica] >gi|568088632|gb|ETN03489.1| hypothetical protein PPTG_15717 [Phytophthora parasitica INRA-310] >gi|570318817|gb|ETO66765.1| hypothetical protein F444_16152 [Phytophthora parasitica P1976] >gi|570942611|gb|ETP07868.1| hypothetical protein F441_15997 [Phytophthora parasitica CJ01A1] >gi|570973222|gb|ETP35903.1| hypothetical protein F442_16020 [Phytophthora parasitica P10297] >gi|970633433|gb|KUF79103.1| NADH dehydrogenase 1 beta subcomplex subunit 9 [Phytophthora nicotianae]) HSP 1 Score: 153.68 bits (387), Expect = 2.856e-43 Identity = 74/136 (54.41%), Postives = 97/136 (71.32%), Query Frame = 0
Query: 3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPV 134
N + R +++ PQLSHK V RLY++SLKTL+SW IDR ++ EA K+RA F AN+ L PESG K LVR+A E++ Y+HPD+YI +MPGG+LFMRN P+P DV F G++PEDV+ PL NIDMTP+
Sbjct: 11 NKTFREVVGRFVGAPPQLSHKQKVQRLYKQSLKTLDSWVIDRRLWNEEATKIRAEFDANSKLDPESGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGNIPEDVELSPLEGINIDMTPL 146
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|301108081|ref|XP_002903122.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097494|gb|EEY55546.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 153.68 bits (387), Expect = 3.081e-43 Identity = 74/136 (54.41%), Postives = 97/136 (71.32%), Query Frame = 0
Query: 3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPV 134
N + R +++ PQLSHK V R+Y+KSLKTL+SW IDR ++ EA K+RA F AN+ L PESG K LVR+A E++ Y+HPD+YI +MPGG+LFMRN P+P DV F G++PEDV+ PL NIDMTP+
Sbjct: 11 NKTFREVVGRFVGAPPQLSHKQKVQRVYKKSLKTLDSWVIDRRLWNEEATKIRAEFDANSKLDPESGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLFMRNAPIPLDVCFPDGNIPEDVELSPLEGINIDMTPL 146
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|953497496|emb|CEG40983.1| (NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit [Plasmopara halstedii]) HSP 1 Score: 153.295 bits (386), Expect = 4.548e-43 Identity = 78/153 (50.98%), Postives = 102/153 (66.67%), Query Frame = 0
Query: 3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPVVKGEKGDGRVLVDSANK 151
N + R +++N PQLSHK V RLY+KSLKTL+SW IDR ++ EA K+RA F AN L P+SG K LVR+A E++ Y+HPD+YI +MPGG+L+MRN P+P DV F G +P+DV+ PL NIDMTP+ E V VD + K
Sbjct: 11 NQTFREVVGRFVNAPPQLSHKQTVQRLYKKSLKTLDSWIIDRRLWNEEATKIRAEFDANKKLDPQSGLAKRLVREAQEKVDHYTHPDRYIFNYMPGGSLYMRNAPIPLDVCFPDGIIPDDVEVSPLEGINIDMTPLPAKET----VFVDFSKK 159
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|325187848|emb|CCA22391.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 147.902 bits (372), Expect = 4.255e-41 Identity = 73/154 (47.40%), Postives = 102/154 (66.23%), Query Frame = 0
Query: 3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEEP---LNIDMTPVVKGEKGDGRVLVDSANKAA 153
N ++R A ++ P L+H +V RLY++SLKTL SW IDR ++ EA K+RA F AN HLAPES + K +++A+E+L +Y+HPD+Y+ +MPGGT FMRN PLP +V F VPEDV+ P +NID TP+ E V VD + K++
Sbjct: 2 NQTLREVVAHFVAPPKNLTHTQVVQRLYKQSLKTLESWVIDRRLWNEEAVKVRAQFDANRHLAPESDQAKFAIKEANEKLKKYTHPDRYVFNYMPGGTKFMRNAPLPLEVCFPNGVPEDVEVSPVEAVNIDGTPLPPKET----VFVDFSKKSS 151
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|1214699873|gb|OWZ12573.1| (Nadh ubiquinone oxidoreductase [Phytophthora megakarya]) HSP 1 Score: 146.747 bits (369), Expect = 1.737e-40 Identity = 75/153 (49.02%), Postives = 101/153 (66.01%), Query Frame = 0
Query: 3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPVVKGEKGDGRVLVDSANK 151
N ++R +++ QLSHK V RLY+ SLKTL+SW IDR ++ EA K+RA F AN+ L PESG K LVR+A +++ Y+HPD+YI +MPGG+L+MRN P+P DV F G +P+DV+ PL NIDMTP+ E V VD + K
Sbjct: 11 NKTLREVVGRFVGAPQQLSHKQKVQRLYKMSLKTLDSWVIDRRLWNEEATKIRAEFDANSALDPESGLAKRLVREAQDKVDHYTHPDRYIFNYMPGGSLYMRNAPIPLDVCFPDGEIPDDVELSPLEAINIDMTPLPAKET----VFVDFSKK 159
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|299115446|emb|CBN75611.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 130.954 bits (328), Expect = 2.631e-34 Identity = 68/156 (43.59%), Postives = 98/156 (62.82%), Query Frame = 0
Query: 3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVFAGHVPEDVKEE------PLNIDMTPVVKGEKGD-GRVLVDSANK 151
N++ R AAAQ+I+ ++HK V RLYR SLK L+SWAIDR +FL EA K+RASF + P+S + KAL+R A++ + + H D+YI P+MP G+ FMRNPP P + + +P++V E + +DM+ +G G+VLVD A K
Sbjct: 6 NSTFRGAAAQFISKQHPITHKQEVCRLYRASLKLLDSWAIDRTIFLEEATKVRASFDEGSKCGPDSARAKALMRGAYKMIDEHVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDEVLAEFKGVPMEVEVDMSRPEEGRMSKAGQVLVDLATK 161
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|1173948824|gb|OQR96910.1| (hypothetical protein THRCLA_21974 [Thraustotheca clavata]) HSP 1 Score: 123.25 bits (308), Expect = 2.108e-31 Identity = 69/155 (44.52%), Postives = 95/155 (61.29%), Query Frame = 0
Query: 3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPVVKGEKGDGRVLVDSANKAA 153
N + AA P LSHK V RLY++SLK L+SW IDR ++ EA +RA F+AN H++ + + L+R A +L Y+HPD Y++ MPGG+ FMRNPPLP +V F G +P+DV+ PL NID TP + E + VLVD K++
Sbjct: 6 NHAFLQAALSVRGATPSLSHKQQVTRLYKRSLKLLDSWVIDRRLWNEEATLIRAQFNANMHVSQTAA--ERLIRDAQAKLNDYTHPDPYVVVHMPGGSKFMRNPPLPLEVCFPDGIIPDDVEVSPLKAINIDTTPYREDELKET-VLVDFTTKSS 157
BLAST of EWM28859.1 vs. NCBI_GenBank
Match: gi|669145896|ref|XP_008608510.1| (hypothetical protein SDRG_04612 [Saprolegnia diclina VS20] >gi|813198266|ref|XP_012208716.1| hypothetical protein SPRG_22330 [Saprolegnia parasitica CBS 223.65] >gi|530739941|gb|EQC38183.1| hypothetical protein SDRG_04612 [Saprolegnia diclina VS20] >gi|641526202|gb|KDO20587.1| hypothetical protein SPRG_22330 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 122.865 bits (307), Expect = 2.225e-31 Identity = 70/155 (45.16%), Postives = 96/155 (61.94%), Query Frame = 0
Query: 3 NASMRAAAAQYINPAPQLSHKTIVVRLYRKSLKTLNSWAIDREVFLSEAGKLRASFSANAHLAPESGKVKALVRKAHEELLRYSHPDKYILPWMPGGTLFMRNPPLPFDVVF-AGHVPEDVKEEPL---NIDMTPVVKGEKGDGRVLVDSANKAA 153
N + AA AP LSHK V RLY++SLK L+SWAIDR ++ EA K+RA F AN + + + L+R A +L+ ++HPD Y++ MPGG+ FMRNPPLP +V F G +P+DV+ PL NID TP + E + VLVD K++
Sbjct: 6 NHAFLQAALSVRGAAPTLSHKQQVTRLYKRSLKLLDSWAIDRRLWNDEATKIRAQFDANKFAS--AAVAERLIRDAQAKLVEFTHPDPYVVVHMPGGSKFMRNPPLPLEVCFPDGVIPDDVEVSPLKAINIDTTPYREDELKET-VLVDFPTKSS 157 The following BLAST results are available for this feature:
BLAST of EWM28859.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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