rna1816, rna1816 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1816
Unique Name	rna1816
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1288
Alignment location	CM002458.1:218357..220554 +

Link to JBrowse

Properties


Property Name	Value
Product	lipase class 3
Orig transcript id	gnl\|cribi\|Naga_100133g7.1510.mrna
Orig protein id	gnl\|cribi\|Naga_100133g7.1510
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:218357..220554 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100133g7	gene1745	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1816	rna1816-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28856.1	cds1812	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:218357..220554+
coding sequence from alignment at CM002458.1:218357..220554+

mRNA sequence

>rna1816 ID=rna1816|Name=rna1816|organism=Nannochloropsis gaditana|type=mRNA|length=1288bp
GCGCCGCCATGGCCATCGACACACTATTCCTTCGCTTAGGATACTGGAAA
ATCGTTTTTGTCTTTCTTTGTCAAACGGGGGCTCTATGCCGTGCGGCCGC
CAGGCCCTGCCCTTCGCTCGTAGATAGGCAACCGTGACAGCAGTACATCC
CAGTAGCATTCGCAAATCCTTCCATCGATCCACGCCTTTTTAATTAGCAT
CCATTTACTCGCTCGCGTCTAGCTATGGGTGCGCTTGCGGGCTTTGTGAA
TGCTCCCGTCACGAAAGGTTACTGCCTTCTGGTGGTAGGAGCCTCCCTCC
TCTCGTCCTACACCCATTCTAGTCACACTTTAAGATTGGACACGACCCGC
ATTCTCCGCAAAGGAGAGCTCTGGCGTCTTTTCACCAGTCAAATCGCCTT
TCAAGAACACCCTCAAACGGTGCTGGGCGTATTCCTGCTCTATACTTTCC
GGCACTTTGAACGGCAAATGGGCTCTCGAAAATTTGGCTCGTTTCTTGTC
CTCTCCACGCTCCTGGCAACGTCAACAGAAATGGCGATTGCTGGCTGGTT
AGGGGGCAAAGGGAGGATAGGAGAGGGGTTGGCCTTGTCTCCCGGGCCCT
TTGGGGTCGTCTACGCCTTGTTTGTCCTCTTTTATACTACCGTACCCAAA
CTCCACCCGCGCCTGCTTCGTGTCTGTGGGGCGGACTTGTCCGACAAGAG
CATGTACTACGCGGTGGGGGCACAGCTTCTCCTTGGTGGGGGCTGGAAAA
CGGCCATTCCCGCCTTGTGTGGCTTGTTTGCGGGCATCCTCTACCGGCGC
AACGTCTTTGGGATGCAATCCGTCCTTCTTCCCCAGGTCCTGTGCCGCGG
CGTGGCTTCCGTCTTGGAGCCCCTGCTCCAGGCAAGGCGCCCGACAATGC
GGGGTCGAGGTGGTGCGGAAAGGCGGCGACGGAGAGCGGGCATGGCGGGG
AGGGAACAGCTCCTGCCGGGGGGCGACCGGGCCCTAGGACGAGGGGGAGG
GGGAGGACGGGAGGGAGGACAGCTGGCACCCCCTCCGCCACCACCACCAG
CGTCGGAGGATGCAATACAGATGTTGATGGGGTTGGGCTTCGAGCGGGGG
GCGGTTGTAAGAGCCTTGCAGGGGGCGGATAACAATGTGGAAGTTGCGGC
GAACAGGCTGCTGCAAGGGGCGTGACGGGGGAGGAAAGCTTGTGGGGGGG
AGGGCAAGGCGGTAGGAGAGGCTGTAGAAAGCGTCAAGAGCGACGGCAGG
TGGTAATAAACAAGGAAAGCTGTAAATTATGCGGCGGC

protein sequence of rna1816

>rna1816-protein ID=rna1816-protein|Name=rna1816|organism=Nannochloropsis gaditana|type=polypeptide|length=421bp
MDCCKSMTTRRSQSHHELMHDCLQAYQNDHSARIHAPENLKLILSIFLLP
SLHCSFRSRKNTEKHMPLATIMLPAGLASLLLMSMVCLCRLPYSFAVEPY
SEDLARQAAVFSSIAYGDPFLVSQNKFYNSSCQLPGFTVLHTYQSQPLDH
DAFGYIGVDKEEKLVVVAFKGSNDTEDYITDLIGSLHYHFSCVIEGVDLG
HTHHGFCAFYTSLVTLGLAEEVAALAARMGEEYTVLVTGHSLGGGVASLC
AVDLGKRLNVSSLLYTFGEPRAGDVGFATAVAEYTRGSYRLVHASDCVPH
LPPCCGGVDGGHCAEVADCPFHHGQEIWYDDDMSVGAQYVACPGDEDEDV
CSNGSISSVEDHHYYFGERLGTWCCFPPPPSERSSEMERKHTMIEQRIKT
LESHGRMSRSEAERTGVTAVV

mRNA from alignment at CM002458.1:218357..220554+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1816 ID=rna1816|Name=rna1816|organism=Nannochloropsis gaditana|type=mRNA|length=2198bp|location=Sequence derived from alignment at CM002458.1:218357..220554+ (Nannochloropsis gaditana)
TGTGGCTTTCACAAACTCTAATTTGGAATCCATCCAAGCTGACAATGACA
TGTCCCCTCGACAATTCCAAACGTGACATCCTTACGATTTTCCAGTATCC
TAAGCGAAGGAATAGTGTGTCGATGGCCATGGCGGCGCTCGCTCGAGTCT
CCGCGACTGCGTGTGAGCGACAGGAACCTAGACCTCCTAAAGAATGGACT
GCTGTAAGAGTATGACAACCAGAAGAAGCCAATCACACCACGAGCTCATG
CACGACTGCTTACAGGCGTATCAGAATGATCATTCTGCCAGGATACATGC
ACCCGAAAATTTAAAGTTGATTCtgtccatttttcttctaccctccctcc
attgctCTTTTCGGTCACGCAAAAATACAGAAAAGCATATGCCATTGGCA
ACAATAATGTTGCCCGCAGGCCTTGCATCCCTGCTCCTCATGTCAATGGT
CTGCCTGTGTCGCCTTCCTTATTCATTCGCGGTGGAACCTTATTCTGAAG
ACCTGGCTCGCCAAGCTGCtgttttctcttccatcgccTATGGAGATCCG
TTTCTTGTCAGCCAAAACAAATTTTACAACAGCTCCTGCCAGCTTCCTGG
CTTCACCGTTCTACATACATATCAATCCCAGCCGTTGGATCATGATGCCT
TTGGTTACATCGGTGTggacaaagaggagaagctggTGGTAGTCGCTTTC
AAGGGGAGCAATGACACGGAGGACTATATCACGGATCTAATCGGATCGCT
GCACTATCACTTCTCATGCGTTATCGAAGGCGTAGATTTAGGACACACGC
ACCACGGATTTTGTGCGTTTTATACTTCATTGGTGACGTTGGggttggcg
gaggaggtcgccgccttggcggcgcgAATGGGAGAGGAGTACACTGTGCT
CGTGACTGGCCACTCTTTGGGTAAGAAAGAGTAGTAGGGAACGGATGAGG
ACAATAGAGAGACAAATAAAACGAAGGACAACAGCGAGATGTGCGTGGGG
ACGAGAGAGATGCCAAATCAAGCCGTCCTacggcctccctgccccctcat
gcccatcgcttcccccccgtctccctcggCCGCGTGCTCCCTTATATCCC
TTTTCAGGTGGCGGGGTGGCATCCCTCTGCGCCGTGGACCTGGGCAAGCG
CCTGAACGTATCCTCCCTGCTTTATACCTTCGGGGAACCCCGTGCCGGGG
ACGTTGGGTTCGCAACGGCTGTCGCGGAATATACCCGGGGTAGCTACCGC
CTGGTCCACGCCTCGGACTGCGTCCCACATTTGCCGCCTTGTTGTGGTGG
AGTGGATGGGGGTAATcatgcgggggagggaggaatggaaagaaaatgag
ggaggaagggaggagggaggaagggagggcgggcccgGGATGCCCAATTT
TCCGTTCGAAGGAGTAGAGGCCGTGGGGGAGACTGACAAGGCGTCCCCTT
GTTCGCTTTCCTCACACGGATGACACAGGGCATTGCGCGGAGGTGGCTGA
CTGCCCTTTCCACCATGGGCAAGAAATTTGGTACGACGACGACATGAGCG
TGGGGGCACAATACGTGGCATGTCCCGGGGATGAGGTAGGAGagcggggc
aaggggaaagggggggcgagcATCCATGGAATTGGCAAGgtcttgttgct
gttgctgatcGAACAGATCGTTATTTGGAAAGGGGGATGGCAAAACGGTG
GTTTCTTCGCTGATTGTCTCCTATTTTTTTTTCAGGATGAGGATGTGTGT
AGCAACGGCTCGATAAGCAGCGTGGAGGACCACCATTACTACTTCGGGGA
GAGGCTCGGAACCTGGTGCTgctttccaccgcctccgtccgAGAGGTCTT
CTGAGATGGAGAGAAAGCATACAATGATTGAGCAGAGAATCAAGACCTTG
GAGAGTCATGGTCGAATGTCGAGgagcgaggcggagagaACGGGAGTTAC
AGCTGTGGTATGATAAATCATATGGTTAAGATGTGTACGAAGGAACtgtg
gaaagaagagggagctcATCGTTTTctaaaggaaaaagaaaagccaAGCC
GTGTTCGCTACTCTTCTCAGAATCTTGCGACACTTGTTTTGATACTCGTC
CTCCCAGAGATTCGTCTACGTGTACAGTTATTTGATTCCTTACGGACAAA
ATGGTATGAAAAATCGCCTCTTACTTACGTTGGGCGCTCATGATAATT

Coding sequence (CDS) from alignment at CM002458.1:218357..220554+

>rna1816 ID=rna1816|Name=rna1816|organism=Nannochloropsis gaditana|type=CDS|length=5064bp|location=Sequence derived from alignment at CM002458.1:218357..220554+ (Nannochloropsis gaditana)
ATGGACTGCTGTAAGAGTATGACAACCAGAAGAAGCCAATCACACCACGA
GCTCATGCACGACTGCTTACAGGCGTATCAGAATGATCATTCTGCCAGGA
TACATGCACCCGAAAATTTAAAGTTGATTCtgtccatttttcttctaccc
tccctccattgctCTTTTCGGTCACGCAAAAATACAGAAAAGCATATGCC
ATTGGCAACAATAATGTTGCCCGCAGGCCTTGCATCCCTGCTCCTCATGT
CAATGGTCTGCCTGTGTCGCCTTCCTTATTCATTCGCGGTGGAACCTTAT
TCTGAAGACCTGGCTCGCCAAGCTGCtgttttctcttccatcgccTATGG
AGATCCGTTTCTTGTCAGCCAAAACAAATTTTACAACAGCTCCTGCCAGC
TTCCTGGCTTCACCGTTCTACATACATATCAATCCCAGCCGTTGGATCAT
GATGCCTTTGGTTACATCGGTGTggacaaagaggagaagctggTGGTAGT
CGCTTTCAAGGGGAGCAATGACACGGAGGACTATATCACGGATCTAATCG
GATCGCTGCACTATCACTTCTCATGCGTTATCGAAGGCGTAGATTTAGGA
CACACGCACCACGGATTTTGTGCGTTTTATACTTCATTGGTGACGTTGGg
gttggcggaggaggtcgccgccttggcggcgcgAATGGGAGAGGAGTACA
CTGTGCTCGTGACTGGCCACTCTTTGGGTGGCGGGGTGGCATCCCTCTGC
GCCGTGGACCTGGGCAAGCGCCTGAACGTATCCTCCCTGCTTTATACCTT
CGGGGAACCCCGTGCCGGGGACGTTGGGTTCGCAACGGCTGTCGCGGAAT
ATACCCGGGGTAGCTACCGCCTGGTCCACGCCTCGGACTGCGTCCCACAT
TTGCCGCCTTGTTGTGGTGGAGTGGATGGGGGGCATTGCGCGGAGGTGGC
TGACTGCCCTTTCCACCATGGGCAAGAAATTTGGTACGACGACGACATGA
GCGTGGGGGCACAATACGTGGCATGTCCCGGGGATGAGGATGAGGATGTG
TGTAGCAACGGCTCGATAAGCAGCGTGGAGGACCACCATTACTACTTCGG
GGAGAGGCTCGGAACCTGGTGCTgctttccaccgcctccgtccgAGAGGT
CTTCTGAGATGGAGAGAAAGCATACAATGATTGAGCAGAGAATCAAGACC
TTGGAGAGTCATGGTCGAATGTCGAGgagcgaggcggagagaACGGGAGT
TACAGCTGTGGTATGAATGGACTGCTGTAAGAGTATGACAACCAGAAGAA
GCCAATCACACCACGAGCTCATGCACGACTGCTTACAGGCGTATCAGAAT
GATCATTCTGCCAGGATACATGCACCCGAAAATTTAAAGTTGATTCtgtc
catttttcttctaccctccctccattgctCTTTTCGGTCACGCAAAAATA
CAGAAAAGCATATGCCATTGGCAACAATAATGTTGCCCGCAGGCCTTGCA
TCCCTGCTCCTCATGTCAATGGTCTGCCTGTGTCGCCTTCCTTATTCATT
CGCGGTGGAACCTTATTCTGAAGACCTGGCTCGCCAAGCTGCtgttttct
cttccatcgccTATGGAGATCCGTTTCTTGTCAGCCAAAACAAATTTTAC
AACAGCTCCTGCCAGCTTCCTGGCTTCACCGTTCTACATACATATCAATC
CCAGCCGTTGGATCATGATGCCTTTGGTTACATCGGTGTggacaaagagg
agaagctggTGGTAGTCGCTTTCAAGGGGAGCAATGACACGGAGGACTAT
ATCACGGATCTAATCGGATCGCTGCACTATCACTTCTCATGCGTTATCGA
AGGCGTAGATTTAGGACACACGCACCACGGATTTTGTGCGTTTTATACTT
CATTGGTGACGTTGGggttggcggaggaggtcgccgccttggcggcgcgA
ATGGGAGAGGAGTACACTGTGCTCGTGACTGGCCACTCTTTGGGTGGCGG
GGTGGCATCCCTCTGCGCCGTGGACCTGGGCAAGCGCCTGAACGTATCCT
CCCTGCTTTATACCTTCGGGGAACCCCGTGCCGGGGACGTTGGGTTCGCA
ACGGCTGTCGCGGAATATACCCGGGGTAGCTACCGCCTGGTCCACGCCTC
GGACTGCGTCCCACATTTGCCGCCTTGTTGTGGTGGAGTGGATGGGGGGC
ATTGCGCGGAGGTGGCTGACTGCCCTTTCCACCATGGGCAAGAAATTTGG
TACGACGACGACATGAGCGTGGGGGCACAATACGTGGCATGTCCCGGGGA
TGAGGATGAGGATGTGTGTAGCAACGGCTCGATAAGCAGCGTGGAGGACC
ACCATTACTACTTCGGGGAGAGGCTCGGAACCTGGTGCTgctttccaccg
cctccgtccgAGAGGTCTTCTGAGATGGAGAGAAAGCATACAATGATTGA
GCAGAGAATCAAGACCTTGGAGAGTCATGGTCGAATGTCGAGgagcgagg
cggagagaACGGGAGTTACAGCTGTGGTATGAATGGACTGCTGTAAGAGT
ATGACAACCAGAAGAAGCCAATCACACCACGAGCTCATGCACGACTGCTT
ACAGGCGTATCAGAATGATCATTCTGCCAGGATACATGCACCCGAAAATT
TAAAGTTGATTCtgtccatttttcttctaccctccctccattgctCTTTT
CGGTCACGCAAAAATACAGAAAAGCATATGCCATTGGCAACAATAATGTT
GCCCGCAGGCCTTGCATCCCTGCTCCTCATGTCAATGGTCTGCCTGTGTC
GCCTTCCTTATTCATTCGCGGTGGAACCTTATTCTGAAGACCTGGCTCGC
CAAGCTGCtgttttctcttccatcgccTATGGAGATCCGTTTCTTGTCAG
CCAAAACAAATTTTACAACAGCTCCTGCCAGCTTCCTGGCTTCACCGTTC
TACATACATATCAATCCCAGCCGTTGGATCATGATGCCTTTGGTTACATC
GGTGTggacaaagaggagaagctggTGGTAGTCGCTTTCAAGGGGAGCAA
TGACACGGAGGACTATATCACGGATCTAATCGGATCGCTGCACTATCACT
TCTCATGCGTTATCGAAGGCGTAGATTTAGGACACACGCACCACGGATTT
TGTGCGTTTTATACTTCATTGGTGACGTTGGggttggcggaggaggtcgc
cgccttggcggcgcgAATGGGAGAGGAGTACACTGTGCTCGTGACTGGCC
ACTCTTTGGGTGGCGGGGTGGCATCCCTCTGCGCCGTGGACCTGGGCAAG
CGCCTGAACGTATCCTCCCTGCTTTATACCTTCGGGGAACCCCGTGCCGG
GGACGTTGGGTTCGCAACGGCTGTCGCGGAATATACCCGGGGTAGCTACC
GCCTGGTCCACGCCTCGGACTGCGTCCCACATTTGCCGCCTTGTTGTGGT
GGAGTGGATGGGGGGCATTGCGCGGAGGTGGCTGACTGCCCTTTCCACCA
TGGGCAAGAAATTTGGTACGACGACGACATGAGCGTGGGGGCACAATACG
TGGCATGTCCCGGGGATGAGGATGAGGATGTGTGTAGCAACGGCTCGATA
AGCAGCGTGGAGGACCACCATTACTACTTCGGGGAGAGGCTCGGAACCTG
GTGCTgctttccaccgcctccgtccgAGAGGTCTTCTGAGATGGAGAGAA
AGCATACAATGATTGAGCAGAGAATCAAGACCTTGGAGAGTCATGGTCGA
ATGTCGAGgagcgaggcggagagaACGGGAGTTACAGCTGTGGTATGAAT
GGACTGCTGTAAGAGTATGACAACCAGAAGAAGCCAATCACACCACGAGC
TCATGCACGACTGCTTACAGGCGTATCAGAATGATCATTCTGCCAGGATA
CATGCACCCGAAAATTTAAAGTTGATTCtgtccatttttcttctaccctc
cctccattgctCTTTTCGGTCACGCAAAAATACAGAAAAGCATATGCCAT
TGGCAACAATAATGTTGCCCGCAGGCCTTGCATCCCTGCTCCTCATGTCA
ATGGTCTGCCTGTGTCGCCTTCCTTATTCATTCGCGGTGGAACCTTATTC
TGAAGACCTGGCTCGCCAAGCTGCtgttttctcttccatcgccTATGGAG
ATCCGTTTCTTGTCAGCCAAAACAAATTTTACAACAGCTCCTGCCAGCTT
CCTGGCTTCACCGTTCTACATACATATCAATCCCAGCCGTTGGATCATGA
TGCCTTTGGTTACATCGGTGTggacaaagaggagaagctggTGGTAGTCG
CTTTCAAGGGGAGCAATGACACGGAGGACTATATCACGGATCTAATCGGA
TCGCTGCACTATCACTTCTCATGCGTTATCGAAGGCGTAGATTTAGGACA
CACGCACCACGGATTTTGTGCGTTTTATACTTCATTGGTGACGTTGGggt
tggcggaggaggtcgccgccttggcggcgcgAATGGGAGAGGAGTACACT
GTGCTCGTGACTGGCCACTCTTTGGGTGGCGGGGTGGCATCCCTCTGCGC
CGTGGACCTGGGCAAGCGCCTGAACGTATCCTCCCTGCTTTATACCTTCG
GGGAACCCCGTGCCGGGGACGTTGGGTTCGCAACGGCTGTCGCGGAATAT
ACCCGGGGTAGCTACCGCCTGGTCCACGCCTCGGACTGCGTCCCACATTT
GCCGCCTTGTTGTGGTGGAGTGGATGGGGGGCATTGCGCGGAGGTGGCTG
ACTGCCCTTTCCACCATGGGCAAGAAATTTGGTACGACGACGACATGAGC
GTGGGGGCACAATACGTGGCATGTCCCGGGGATGAGGATGAGGATGTGTG
TAGCAACGGCTCGATAAGCAGCGTGGAGGACCACCATTACTACTTCGGGG
AGAGGCTCGGAACCTGGTGCTgctttccaccgcctccgtccgAGAGGTCT
TCTGAGATGGAGAGAAAGCATACAATGATTGAGCAGAGAATCAAGACCTT
GGAGAGTCATGGTCGAATGTCGAGgagcgaggcggagagaACGGGAGTTA
CAGCTGTGGTATGA

Synonyms

Publications