rna1812, rna1812 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1812
Unique Name	rna1812
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2361
Alignment location	CM002458.1:211291..212731 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100133g3.1512.mrna
Orig protein id	gnl\|cribi\|Naga_100133g3.1512
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:211291..212731 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100133g3	gene1741	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1812	rna1812-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28858.1	cds1808	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:211291..212731+
coding sequence from alignment at CM002458.1:211291..212731+

mRNA sequence

>rna1812 ID=rna1812|Name=rna1812|organism=Nannochloropsis gaditana|type=mRNA|length=2361bp
GGGAAGCCAATATTTGGTCCACGTGGGCACTGGCAAAATGCAAGCATTTA
TACCTGTGGCACCACGCACGGGCATGGAAATATGACAGGGCTGTTATCTA
AATGCTGCAGAGGCACTTTTTGTGGCACGGAATAGTTCGGGCCCAGTATA
TGTTTCGTGTGTAATTTCAATACGCATTAGTTTTCGACCATCGAAACAGG
GAAGCGAGTGGGCGCTTTCCGTGAGGTCATGGCGTCCATATCTTGCATTA
GGCAGTCTCTAGAGCTTGAAAACTTTGAGCAAGGGGCTCCGGTAATAGAT
CGGGCCGCGACTACAAGCCCTGCCACGATCTTGGATGACCTGTCGATCCC
AGACGGGCTGGATCCACCACCTGTCGCGTACAAGGGCTGCGGAAACGACG
GGTGTGCAGAAGTTGTGGACGCTAGCTTTCCTGCCTACGACCACCTCTGT
TTTAGAGTTCATCGGAGCAGTCACAGCAGGAGTCCTGGCTTCGACCCCGC
CTCGGAGAAAAGCCCCAGCCTTGTTCCCGGTGCCGCCACGGCGTCGGGGG
TGGTGCGGGAGGTGGTTATAAGCCCGTGGAAACAGGGAGGTGGGGGCAGG
AAGAGCCCGCACGTGGCGTCCCATGAGGAGATGCCCGTGGGGCGCAGGCT
CTCAGTGACAGGCGAGCAGGGGGACGGCCCTGAAACTCCCTCTGACAGGC
ATGGCAAAGAGGACAAGGTAGCCTGCTTCCGTGCGACGAGCCAGGATCCA
ATGGAGACGTCCATAACCGGGGCCGCATGTCCACTGCGGAGCCAGCAGCC
GCCTCTCCGGCAGCAGGGAGAGGAAGGGGGGAAGGAGGAGGAGGAAGGGC
GAGGGGGTGCAGGCGAGGCGCGGTACGGGCAAAGGCCATCGCAGAGGCAG
CACGGCCAGAGGGAAGGGGAGGAGGAGGAGGAGGAGGGAAGACGAGGAGA
CGCTCCGCGGCCGTTGCGGCAGGCGGATGGGGCCGCAGAAAAGGGGGAAG
AGGAGGGGTCGATTCAGGTCTCGACGGAGGTGCAGCGTCGCCTCCCCCCC
AGCCGGGAGGGAGGGAAGGAAGGGAGAGAAGGGGAAGAGAAAGCGAGCAG
GGAGAGGAAAACCCTCCAAGCCGTGGCCCGTTTGGACCTGGACGACCAGG
CCTCCCCCCTGTGGCTCCCCGAGAGCATGGCTCGGAGCACGCCCTCCTCC
TCCCTCTCCTCCTCCTCCTCCTCCTCCTCCATCCTACGGAAGCAAAGTGC
CTTCCTCCCTCCCTCCCCCGGCCTCTCATGCTCCCCGTCCAGCAACGGCA
AAAAGGGCATCCGTTTTGCGGATGCGATGGGGCAGGCCCTGGCGGCGGTC
CGTTACTCGCAACGGTTGCAATATAGCCCAACGGCCGTCCCTCAGCGGTG
GGAGGAGGGAGGGAGGGAGGAAGGGTGGGAAGAGGTGACAGAGGAGGAGG
AAGAGTGGAACGTGGAGTGGATGGGGGAGGAGGACGGGGAGGAGGAGGAG
GAGGGGGAGCAGGAGGGCTGGTGGACCCTGTGGCCAAGCGAGCTCTCGGC
ATTTAAACGGCGGCAAATGGCGGCGGCCCGGCGTCGCCGACGGCTCCGGA
AAGAGCTGCGGAGGCGGGCCGAAGAGGAGAGAGAACAGGCCCAGCGAAAG
GCGCAGGAGGGGAAGGCGGTGGAGTTGAAGGAGGATCTTGCGGGGGGCCG
CGGGGCCGAAAAATACCGAAGGTACACGGAGGCGAAACGGAGCCGGATCC
CCCTGCCTCCCTCCCCCCCCACCTCTCCCCGTACGGTGGGCGCTCGGTTG
GTCCGAGGGAAAGCTAGCAAAGGGAGTAAGGTGGGACTGGCGCCGTGGTG
GGAGGGAGGAAAGGGGGAGGAGGACGGGGAGAAGGGGAGGGCGGGTCGGT
GGGAGGGAGCCGGGAGAAGCGCGAGGGAGGGGAAGAGAGAGATGGGGGAG
AGGGAGGGAGAAAAGGCGGCCAGGGATGTCCAAGCCCAGTGCTGTGTGGT
CTCGTAAAGGGGAAGACAGGACGGGGCCGGTGCGCAGTCGCCGCCTGGGG
AGGCGAGAAGGGAAGCTTCTCGATGTTTCTAGATGTTTTCACGCACGTCG
CTGGTGGGAGAAGCTTCTACACGTTTCTACACGCGTGGCTGCTGCGGGCC
GCGTCGCGGAGGGGGTATGAGGAGGAAGGAGGAGGGGGAAGAAGGTCGGT
CTCGCGTGATGGCTCTCTCTCGAACTGCATATTTGTAGGTAATGACGTCA
CCGCGCAACGCTTGCTTGTAATACACGTAACGATATAATTCCAGCGACAA
GTTGGAGGAAACAGGCATGACATGCCTTTTCTAGGAAGAAAAACATTTGA
TTGACGACAGA

protein sequence of rna1812

>rna1812-protein ID=rna1812-protein|Name=rna1812|organism=Nannochloropsis gaditana|type=polypeptide|length=287bp
MNGQTGSAQSRGLNASGVAFHQFYHPGGCCQSKHVSRRCMVPHPPRSSGR
HDHPEHRPQAPPARSKPHQRRRRSRRGWTLPRPPPSPGRTFLAGRGRGGG
PQRGAPREPAQAREWRVASGLGCSGEERYARVVSNSGVLLLFHVSHTMQA
APRSSFAEVDFNHGRQLAYRRPKALVGSGSKGELSRRRPSRRTLADLRLL
TCVQQWRTYLSPGPSGLKREARRRKGYQKRRASSVLGVGVFDHKEFRQGG
ASLSVTSVRTELPKEPLTPSLPPFLPPSLPPSLRASL

mRNA from alignment at CM002458.1:211291..212731+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1812 ID=rna1812|Name=rna1812|organism=Nannochloropsis gaditana|type=mRNA|length=1441bp|location=Sequence derived from alignment at CM002458.1:211291..212731+ (Nannochloropsis gaditana)
ATGAATGGACAGACAGGGTCAGCCCAAAGTCGAGGGCTGAATGCTTCGGG
TGTTGCCTTTCATCAGTTTTATCACCCTGGTGGCTGTTGTCAAAGCAAAC
ACGTTTCACGAAGATGTATGGTACCCCACCCACCGCGCTCTTCTGGACGA
CATGACCATCCCGAACATCGGCCTCAAGCCCCACCTGCGAGGTGTAAGTA
CTCATTCATCCTGGTGATGGCTTGTCTCAAAGCTTCCACAAAGCTTTGGg
actccttgtccacctgATATATGTGATCAATTACCGCCGCGGCCGTACGC
TCCTCACGATGAGGCACTCCCCGCAACTTTTCTCACCATCCGTGCCCATC
CcttgtcatcctcccctctgtgCAGCGAAGCCTCATCAACGTCGACGACG
TtcaaggcggggatggaCCCTTCCcagaccccccccctctcctgggAGAA
CCTTCCTTGccggccgtggacgaggaggaggacctcaACGGGGTGCCCCT
CGGGAACCCGCGCAGGCCCGGGAGTGGAGGGTCGCATCAGGGCTAGGTTG
CAGCGGAGAGGAGCGATACGTCTGGCAGTGAGCAGGGACGGGCGACAGTG
GGAGTCTGTCGTGGGGTAGGCCCGCGTCGTCTCGAATTCAGGTGTCCTAT
TGCTTTTTCATGTGTCTCATACCATGCAGGCGGCTCCTCGCTCGTCCTTT
GCAGAGGTGGATTTTAACCACGGCCGACAGCTCGCTTACAGGCGGCCGAA
AGCGCTCGTTGGGTCTGGCAGTAAGGGGGAGCTCTCTCGAAGACGACCCT
CCCGGAGGACTCTCGCGGACCTGAGACTTGTCGATACACGAAAATTTGAC
GAATACCACTGAATTACATGTAAATGGAGTGATGTGAGCTCACGTGTGTA
CAGCAGTGGCGAACGTATTTGTCCCCGGGACCATCCGgattgaagaggga
agcTCGCAGAAGGAAAGGTTATCAGAAACGGCGTGCCAGCAGTGTTCTGG
GAGTCGGCGTGTTCGATCACAAAGAATTTAGACAGGGCGGTGCATCTCTT
TCGGTCACGAGCGTCAGGGTTGCATTGAGTTTTCATTTTCATAAATTTGA
CGTCGACCTGAGCGTCCAGACGGCCTCTGCCTGCGTATTCATCCACCTAG
ACCCTTTGCACAGCTCTCGCGTTGCACTATTGGTACAATACAATCGATTC
ACTCCCCGCGCTCGCACGAATCTCGGCCACCACAACGGCAAACTCCACAA
GGTCACGCGCCTCTGCCATTGCCTCAAGCCCTTTCTacatcctccccttt
ccccccctcgttcctccctccctccctccctccctccccctctccctcga
gAAGACAGAGCTGCCGAAAGAacccctcactccctccctccctccctttc
tccctccctccctccctccctccctcagagCCAGTCTTTGA

Coding sequence (CDS) from alignment at CM002458.1:211291..212731+

>rna1812 ID=rna1812|Name=rna1812|organism=Nannochloropsis gaditana|type=CDS|length=4320bp|location=Sequence derived from alignment at CM002458.1:211291..212731+ (Nannochloropsis gaditana)
ATGAATGGACAGACAGGGTCAGCCCAAAGTCGAGGGCTGAATGCTTCGGG
TGTTGCCTTTCATCAGTTTTATCACCCTGGTGGCTGTTGTCAAAGCAAAC
ACGTTTCACGAAGATGTATGGTACCCCACCCACCGCGCTCTTCTGGACGA
CATGACCATCCCGAACATCGGCCTCAAGCCCCACCTGCGAGGTCGAAGCC
TCATCAACGTCGACGACGTtcaaggcggggatggaCCCTTCCcagacccc
ccccctctcctgggAGAACCTTCCTTGccggccgtggacgaggaggagga
cctcaACGGGGTGCCCCTCGGGAACCCGCGCAGGCCCGGGAGTGGAGGGT
CGCATCAGGGCTAGGTTGCAGCGGAGAGGAGCGATACGCCCGCGTCGTCT
CGAATTCAGGTGTCCTATTGCTTTTTCATGTGTCTCATACCATGCAGGCG
GCTCCTCGCTCGTCCTTTGCAGAGGTGGATTTTAACCACGGCCGACAGCT
CGCTTACAGGCGGCCGAAAGCGCTCGTTGGGTCTGGCAGTAAGGGGGAGC
TCTCTCGAAGACGACCCTCCCGGAGGACTCTCGCGGACCTGAGACTTCTC
ACGTGTGTACAGCAGTGGCGAACGTATTTGTCCCCGGGACCATCCGgatt
gaagagggaagcTCGCAGAAGGAAAGGTTATCAGAAACGGCGTGCCAGCA
GTGTTCTGGGAGTCGGCGTGTTCGATCACAAAGAATTTAGACAGGGCGGT
GCATCTCTTTCGGTCACGAGCGTCAGGACAGAGCTGCCGAAAGAacccct
cactccctccctccctccctttctccctccctccctccctccctccctca
gagCCAGTCTTTGAATGAATGGACAGACAGGGTCAGCCCAAAGTCGAGGG
CTGAATGCTTCGGGTGTTGCCTTTCATCAGTTTTATCACCCTGGTGGCTG
TTGTCAAAGCAAACACGTTTCACGAAGATGTATGGTACCCCACCCACCGC
GCTCTTCTGGACGACATGACCATCCCGAACATCGGCCTCAAGCCCCACCT
GCGAGGTCGAAGCCTCATCAACGTCGACGACGTtcaaggcggggatggaC
CCTTCCcagaccccccccctctcctgggAGAACCTTCCTTGccggccgtg
gacgaggaggaggacctcaACGGGGTGCCCCTCGGGAACCCGCGCAGGCC
CGGGAGTGGAGGGTCGCATCAGGGCTAGGTTGCAGCGGAGAGGAGCGATA
CGCCCGCGTCGTCTCGAATTCAGGTGTCCTATTGCTTTTTCATGTGTCTC
ATACCATGCAGGCGGCTCCTCGCTCGTCCTTTGCAGAGGTGGATTTTAAC
CACGGCCGACAGCTCGCTTACAGGCGGCCGAAAGCGCTCGTTGGGTCTGG
CAGTAAGGGGGAGCTCTCTCGAAGACGACCCTCCCGGAGGACTCTCGCGG
ACCTGAGACTTCTCACGTGTGTACAGCAGTGGCGAACGTATTTGTCCCCG
GGACCATCCGgattgaagagggaagcTCGCAGAAGGAAAGGTTATCAGAA
ACGGCGTGCCAGCAGTGTTCTGGGAGTCGGCGTGTTCGATCACAAAGAAT
TTAGACAGGGCGGTGCATCTCTTTCGGTCACGAGCGTCAGGACAGAGCTG
CCGAAAGAacccctcactccctccctccctccctttctccctccctccct
ccctccctccctcagagCCAGTCTTTGAATGAATGGACAGACAGGGTCAG
CCCAAAGTCGAGGGCTGAATGCTTCGGGTGTTGCCTTTCATCAGTTTTAT
CACCCTGGTGGCTGTTGTCAAAGCAAACACGTTTCACGAAGATGTATGGT
ACCCCACCCACCGCGCTCTTCTGGACGACATGACCATCCCGAACATCGGC
CTCAAGCCCCACCTGCGAGGTCGAAGCCTCATCAACGTCGACGACGTtca
aggcggggatggaCCCTTCCcagaccccccccctctcctgggAGAACCTT
CCTTGccggccgtggacgaggaggaggacctcaACGGGGTGCCCCTCGGG
AACCCGCGCAGGCCCGGGAGTGGAGGGTCGCATCAGGGCTAGGTTGCAGC
GGAGAGGAGCGATACGCCCGCGTCGTCTCGAATTCAGGTGTCCTATTGCT
TTTTCATGTGTCTCATACCATGCAGGCGGCTCCTCGCTCGTCCTTTGCAG
AGGTGGATTTTAACCACGGCCGACAGCTCGCTTACAGGCGGCCGAAAGCG
CTCGTTGGGTCTGGCAGTAAGGGGGAGCTCTCTCGAAGACGACCCTCCCG
GAGGACTCTCGCGGACCTGAGACTTCTCACGTGTGTACAGCAGTGGCGAA
CGTATTTGTCCCCGGGACCATCCGgattgaagagggaagcTCGCAGAAGG
AAAGGTTATCAGAAACGGCGTGCCAGCAGTGTTCTGGGAGTCGGCGTGTT
CGATCACAAAGAATTTAGACAGGGCGGTGCATCTCTTTCGGTCACGAGCG
TCAGGACAGAGCTGCCGAAAGAacccctcactccctccctccctcccttt
ctccctccctccctccctccctccctcagagCCAGTCTTTGAATGAATGG
ACAGACAGGGTCAGCCCAAAGTCGAGGGCTGAATGCTTCGGGTGTTGCCT
TTCATCAGTTTTATCACCCTGGTGGCTGTTGTCAAAGCAAACACGTTTCA
CGAAGATGTATGGTACCCCACCCACCGCGCTCTTCTGGACGACATGACCA
TCCCGAACATCGGCCTCAAGCCCCACCTGCGAGGTCGAAGCCTCATCAAC
GTCGACGACGTtcaaggcggggatggaCCCTTCCcagaccccccccctct
cctgggAGAACCTTCCTTGccggccgtggacgaggaggaggacctcaACG
GGGTGCCCCTCGGGAACCCGCGCAGGCCCGGGAGTGGAGGGTCGCATCAG
GGCTAGGTTGCAGCGGAGAGGAGCGATACGCCCGCGTCGTCTCGAATTCA
GGTGTCCTATTGCTTTTTCATGTGTCTCATACCATGCAGGCGGCTCCTCG
CTCGTCCTTTGCAGAGGTGGATTTTAACCACGGCCGACAGCTCGCTTACA
GGCGGCCGAAAGCGCTCGTTGGGTCTGGCAGTAAGGGGGAGCTCTCTCGA
AGACGACCCTCCCGGAGGACTCTCGCGGACCTGAGACTTCTCACGTGTGT
ACAGCAGTGGCGAACGTATTTGTCCCCGGGACCATCCGgattgaagaggg
aagcTCGCAGAAGGAAAGGTTATCAGAAACGGCGTGCCAGCAGTGTTCTG
GGAGTCGGCGTGTTCGATCACAAAGAATTTAGACAGGGCGGTGCATCTCT
TTCGGTCACGAGCGTCAGGACAGAGCTGCCGAAAGAacccctcactccct
ccctccctccctttctccctccctccctccctccctccctcagagCCAGT
CTTTGAATGAATGGACAGACAGGGTCAGCCCAAAGTCGAGGGCTGAATGC
TTCGGGTGTTGCCTTTCATCAGTTTTATCACCCTGGTGGCTGTTGTCAAA
GCAAACACGTTTCACGAAGATGTATGGTACCCCACCCACCGCGCTCTTCT
GGACGACATGACCATCCCGAACATCGGCCTCAAGCCCCACCTGCGAGGTC
GAAGCCTCATCAACGTCGACGACGTtcaaggcggggatggaCCCTTCCca
gaccccccccctctcctgggAGAACCTTCCTTGccggccgtggacgagga
ggaggacctcaACGGGGTGCCCCTCGGGAACCCGCGCAGGCCCGGGAGTG
GAGGGTCGCATCAGGGCTAGGTTGCAGCGGAGAGGAGCGATACGCCCGCG
TCGTCTCGAATTCAGGTGTCCTATTGCTTTTTCATGTGTCTCATACCATG
CAGGCGGCTCCTCGCTCGTCCTTTGCAGAGGTGGATTTTAACCACGGCCG
ACAGCTCGCTTACAGGCGGCCGAAAGCGCTCGTTGGGTCTGGCAGTAAGG
GGGAGCTCTCTCGAAGACGACCCTCCCGGAGGACTCTCGCGGACCTGAGA
CTTCTCACGTGTGTACAGCAGTGGCGAACGTATTTGTCCCCGGGACCATC
CGgattgaagagggaagcTCGCAGAAGGAAAGGTTATCAGAAACGGCGTG
CCAGCAGTGTTCTGGGAGTCGGCGTGTTCGATCACAAAGAATTTAGACAG
GGCGGTGCATCTCTTTCGGTCACGAGCGTCAGGACAGAGCTGCCGAAAGA
acccctcactccctccctccctccctttctccctccctccctccctccct
ccctcagagCCAGTCTTTGA

Synonyms

Publications