EWM28858.1, cds1808 (CDS) Nannochloropsis gaditana

Overview
NameEWM28858.1
Unique Namecds1808
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:211291..211483 +
Alignment locationCM002458.1:211666..211859 +
Alignment locationCM002458.1:211910..212119 +
Alignment locationCM002458.1:212179..212358 +
Alignment locationCM002458.1:212645..212731 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28858.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100133g3.1512.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:211291..211483 +
CM002458.1supercontigCM002458.1:211666..211859 +
CM002458.1supercontigCM002458.1:211910..212119 +
CM002458.1supercontigCM002458.1:212179..212358 +
CM002458.1supercontigCM002458.1:212645..212731 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM28858.1 vs. NCBI_GenBank
Match: gi|585111285|gb|EWM28858.1| (hypothetical protein Naga_100133g3 [Nannochloropsis gaditana])

HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0 
Query:    1 MNGQTGSAQSRGLNASGVAFHQFYHPGGCCQSKHVSRRCMVPHPPRSSGRHDHPEHRPQAPPARSKPHQRRRRSRRGWTLPRPPPSPGRTFLAGRGRGGGPQRGAPREPAQAREWRVASGLGCSGEERYARVVSNSGVLLLFHVSHTMQAAPRSSFAEVDFNHGRQLAYRRPKALVGSGSKGELSRRRPSRRTLADLRLLTCVQQWRTYLSPGPSGLKREARRRKGYQKRRASSVLGVGVFDHKEFRQGGASLSVTSVRTELPKEPLTPSLPPFLPPSLPPSLRASL 287
            MNGQTGSAQSRGLNASGVAFHQFYHPGGCCQSKHVSRRCMVPHPPRSSGRHDHPEHRPQAPPARSKPHQRRRRSRRGWTLPRPPPSPGRTFLAGRGRGGGPQRGAPREPAQAREWRVASGLGCSGEERYARVVSNSGVLLLFHVSHTMQAAPRSSFAEVDFNHGRQLAYRRPKALVGSGSKGELSRRRPSRRTLADLRLLTCVQQWRTYLSPGPSGLKREARRRKGYQKRRASSVLGVGVFDHKEFRQGGASLSVTSVRTELPKEPLTPSLPPFLPPSLPPSLRASL
Sbjct:    1 MNGQTGSAQSRGLNASGVAFHQFYHPGGCCQSKHVSRRCMVPHPPRSSGRHDHPEHRPQAPPARSKPHQRRRRSRRGWTLPRPPPSPGRTFLAGRGRGGGPQRGAPREPAQAREWRVASGLGCSGEERYARVVSNSGVLLLFHVSHTMQAAPRSSFAEVDFNHGRQLAYRRPKALVGSGSKGELSRRRPSRRTLADLRLLTCVQQWRTYLSPGPSGLKREARRRKGYQKRRASSVLGVGVFDHKEFRQGGASLSVTSVRTELPKEPLTPSLPPFLPPSLPPSLRASL 287
The following BLAST results are available for this feature:
BLAST of EWM28858.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111285|gb|EWM28858.1|0.000e+0100.00hypothetical protein Naga_100133g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1812rna1812Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications