rna1809, rna1809 (mRNA) Nannochloropsis gaditana

Overview
Namerna1809
Unique Namerna1809
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length261
Alignment locationCM002458.1:205696..206117 +

Link to JBrowse

Properties
Property NameValue
Productglycine dehydrogenase
Orig transcript idgnl|cribi|Naga_103328g1.4466.mrna
Orig protein idgnl|cribi|Naga_103328g1.4466
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:205696..206117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103328g1gene1738Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1809rna1809-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28868.1cds1805Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1809 ID=rna1809|Name=rna1809|organism=Nannochloropsis gaditana|type=mRNA|length=261bp
ATGGCCATAACCAGAAGCGAAAGAAGTTCTTTGTCTCGAAGGACGCCCAC
CCCCAGAACATCGGCCTCCTTCAGACCCGTGGGAAACCTCTGGGCATCGA
GGTCGTGGTTGGAGACCACCGGACTGTCGATTTCACCTCCAAAGAGTACT
GTGGGGCCCTCATCCAGTACCCCAACACCTATGGAAAGGTGGATGCCTAC
GACGAGTTTGTGCAGCGGGCGCACGCGGCCGACGTCTTGGTCGTGGCAGC
GACGGACCTGA
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protein sequence of rna1809

>rna1809-protein ID=rna1809-protein|Name=rna1809|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MPEKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGV
AEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFGRPCRLKWRER
RPS
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mRNA from alignment at CM002458.1:205696..206117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1809 ID=rna1809|Name=rna1809|organism=Nannochloropsis gaditana|type=mRNA|length=422bp|location=Sequence derived from alignment at CM002458.1:205696..206117+ (Nannochloropsis gaditana)
ATGCCTGAagtcccttctctccctcccgccctctttccagTCCTACGGCG
TCTACCATGGTCCCGACGGACTGAAGAAAATCGCCGCGCGCATTCACGGG
CTCGCCTGCGTcacggcctccgccttgtcctctgCCGGCTTTGCGGTGGA
CCCGGCGCCTTTCTTCGACACTCTGTGCGTGGACGTGGGGAGCAAAGGTT
TGACAGCCGcgggggtggcggaggcggcggcggaggaaggcctgaACATC
CGGGTGATTGACCCGACGCACGTGGGCCTTGCCTTTGGGGAGACCGTGAC
GAAAGCCGAAGTGGAAGGCTTGCTGCGGGCCTTTGGGTTGGAGGGGGTGG
atgtggaggcggtggccgccaaggcggagTCGCCCTTGCCGGCtgaaatg
gcgcgaaagacGCCCTTCATGA
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Coding sequence (CDS) from alignment at CM002458.1:205696..206117+

>rna1809 ID=rna1809|Name=rna1809|organism=Nannochloropsis gaditana|type=CDS|length=936bp|location=Sequence derived from alignment at CM002458.1:205696..206117+ (Nannochloropsis gaditana)
ATGCCTGAaAAAATCGCCGCGCGCATTCACGGGCTCGCCTGCGTcacggc
ctccgccttgtcctctgCCGGCTTTGCGGTGGACCCGGCGCCTTTCTTCG
ACACTCTGTGCGTGGACGTGGGGAGCAAAGGTTTGACAGCCGcgggggtg
gcggaggcggcggcggaggaaggcctgaACATCCGGGTGATTGACCCGAC
GCACGTGGGCCTTGCCTTTGGGGAGACCGTGACGAAAGCCGAAGTGGAAG
GCTTGCTGCGGGCCTTTGGTCGCCCTTGCCGGCtgaaatggcgcgaaaga
cGCCCTTCATGAATGCCTGAaAAAATCGCCGCGCGCATTCACGGGCTCGC
CTGCGTcacggcctccgccttgtcctctgCCGGCTTTGCGGTGGACCCGG
CGCCTTTCTTCGACACTCTGTGCGTGGACGTGGGGAGCAAAGGTTTGACA
GCCGcgggggtggcggaggcggcggcggaggaaggcctgaACATCCGGGT
GATTGACCCGACGCACGTGGGCCTTGCCTTTGGGGAGACCGTGACGAAAG
CCGAAGTGGAAGGCTTGCTGCGGGCCTTTGGTCGCCCTTGCCGGCtgaaa
tggcgcgaaagacGCCCTTCATGAATGCCTGAaAAAATCGCCGCGCGCAT
TCACGGGCTCGCCTGCGTcacggcctccgccttgtcctctgCCGGCTTTG
CGGTGGACCCGGCGCCTTTCTTCGACACTCTGTGCGTGGACGTGGGGAGC
AAAGGTTTGACAGCCGcgggggtggcggaggcggcggcggaggaaggcct
gaACATCCGGGTGATTGACCCGACGCACGTGGGCCTTGCCTTTGGGGAGA
CCGTGACGAAAGCCGAAGTGGAAGGCTTGCTGCGGGCCTTTGGTCGCCCT
TGCCGGCtgaaatggcgcgaaagacGCCCTTCATGA
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Synonyms
Publications