EWM28868.1, cds1805 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|585111298|gb|EWM28868.1| (glycine dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 206.838 bits (525), Expect = 1.301e-67 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 Query: 1 MPEKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFGRPCRLKWRERRPS 103 MPEKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFGRPCRLKWRERRPS Sbjct: 1 MPEKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFGRPCRLKWRERRPS 103
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|298708947|emb|CBJ30901.1| (Glycine dehydrogenase (decarboxylating) [Ectocarpus siliculosus]) HSP 1 Score: 90.5077 bits (223), Expect = 4.687e-19 Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 0 Query: 5 IAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFG 90 IA RI+G+A VTA+AL AGF V FFDT VDV +KG ++ +A+A +G N+RVID +GL+FGE++TK +V LL FG Sbjct: 391 IAERINGMAAVTAAALKEAGFGVSSEQFFDTFSVDVSAKGTSSTAIAQACEAKGANVRVIDDKTIGLSFGESITKDDVVALLEGFG 476
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|223998052|ref|XP_002288699.1| (glycine decarboxylase p-protein [Thalassiosira pseudonana CCMP1335] >gi|220975807|gb|EED94135.1| glycine decarboxylase p-protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 85.8853 bits (211), Expect = 1.827e-17 Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 0 Query: 3 EKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLR-AFG 90 + I+ RIH LA V LS+AG+ V +PFFDT VDV KG+TAA V E AA G N+R+ID VGL+ GE +T+ ++ LL AFG Sbjct: 355 KNISGRIHALARVAHRELSNAGYGVTDSPFFDTFSVDVSKKGMTAAQVQEGAASVGANVRIIDENTVGLSMGEGITRDDLSALLSGAFG 443
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|849129732|ref|WP_047994023.1| (glycine dehydrogenase (aminomethyl-transferring) [Puniceibacterium sp. IMCC21224] >gi|846954206|gb|KMK65699.1| glycine dehydrogenase, decarboxylating [Puniceibacterium sp. IMCC21224]) HSP 1 Score: 78.5666 bits (192), Expect = 7.356e-15 Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 0 Query: 5 IAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFG 90 IA RIH AS L +AGF V+PA FFDT+ VDVG L GV +AA +G+N+R + THVG+ ET A +E + RAFG Sbjct: 358 IAQRIHRKTTRLASGLEAAGFVVEPATFFDTITVDVG---LLQRGVMQAAVTQGVNLRAVGKTHVGITLDETTRPATIEAVWRAFG 440
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|219124701|ref|XP_002182636.1| (glycine decarboxylase p- protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405982|gb|EEC45923.1| glycine decarboxylase p- protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 76.2554 bits (186), Expect = 4.126e-14 Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 0 Query: 5 IAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLL 86 IA R+H LA V + AGF V PFFDT VDV SKG+ A V AA G N+RVID VG+A GE +T+ ++ LL Sbjct: 389 IAGRVHALAAVGHREIGKAGFKVTEGPFFDTFTVDVSSKGMNATEVQAGAASVGANVRVIDEKRVGVAMGEGITRDDLGKLL 470
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|1210524620|dbj|GAX16520.1| (glycine dehydrogenase [Fistulifera solaris]) HSP 1 Score: 76.2554 bits (186), Expect = 4.683e-14 Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 0 Query: 5 IAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLR 87 I++RIH LA V + AGF V FFDT VDV SKG+TAA V A G N+RVID VG++ GE +T+ +++ LL Sbjct: 392 ISSRIHALAKVAHREIGKAGFKVSNDAFFDTFTVDVSSKGMTAAEVQSGAVSVGANVRVIDNNTVGISMGEGITRDDLKALLE 474
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|1210511917|dbj|GAX29157.1| (glycine dehydrogenase [Fistulifera solaris]) HSP 1 Score: 76.2554 bits (186), Expect = 4.728e-14 Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 0 Query: 5 IAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLR 87 I++RIH LA V + AGF V FFDT VDV SKG+TAA V A G N+RVID VG++ GE +T+ +++ LL Sbjct: 389 ISSRIHALAKVAHREIGKAGFKVSNDAFFDTFTVDVSSKGMTAAEVQSGAVSVGANVRVIDNNTVGISMGEGITRDDLKALLE 471
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|397566636|gb|EJK45128.1| (hypothetical protein THAOC_36273 [Thalassiosira oceanica]) HSP 1 Score: 75.8702 bits (185), Expect = 7.259e-14 Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 0 Query: 3 EKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLL-RAFG 90 + I+ RIH LA V L AGF V PFFDT VDV +KG++A V A G N+RVID VG++ GE +T+ ++ LL AFG Sbjct: 399 KDISGRIHALARVAHRELGEAGFGVAEGPFFDTFIVDVSTKGMSADQVQAGAVAVGANVRVIDSNTVGISMGEGITREDLSALLSSAFG 487
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|549984088|ref|WP_022574032.1| (glycine dehydrogenase (aminomethyl-transferring) [Rhodobacteraceae bacterium HIMB11] >gi|548322560|gb|ERL96625.1| glycine dehydrogenase, decarboxylating [Rhodobacteraceae bacterium HIMB11]) HSP 1 Score: 73.9442 bits (180), Expect = 3.141e-13 Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 0 Query: 3 EKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFG 90 + IA RIH A L AGF V+PA FFDT+ VDVG L GV +AA EG+N+R + T VG++F E + E + RAFG Sbjct: 356 KAIAQRIHRKTVRLAKGLEEAGFTVEPAAFFDTITVDVG---LLQKGVIQAAVNEGINLRPVGKTKVGISFDERTRRETTEAVWRAFG 440
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|1072228909|gb|OEU13644.1| (glycine cleavage system P-protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 73.559 bits (179), Expect = 4.553e-13 Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 0 Query: 3 EKIAARIHGLACVTASALSSAGFAV---DPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLL 86 ++I R+H L V A L++ GF + + +FDT+ VDV SKGLTAA V AAE G NIR+ID VG++ GE +T+ ++ LL Sbjct: 357 KEIGGRVHALTRVAARELTAGGFKLVLNEAGEYFDTIAVDVSSKGLTAAEVQAGAAEAGANIRIIDDNTVGVSMGEGITRDDLFALL 443 The following BLAST results are available for this feature:
BLAST of EWM28868.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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