EWM28868.1, cds1805 (CDS) Nannochloropsis gaditana

Overview
NameEWM28868.1
Unique Namecds1805
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:205696..205704 +
Alignment locationCM002458.1:205772..206031 +
Alignment locationCM002458.1:206075..206117 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28868.1
Productglycine dehydrogenase
Orig transcript idgnl|cribi|Naga_103328g1.4466.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:205696..205704 +
CM002458.1supercontigCM002458.1:205772..206031 +
CM002458.1supercontigCM002458.1:206075..206117 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0055114oxidation-reduction process
GO:0006546glycine catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0004375glycine dehydrogenase (decarboxylating) activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR020581GDC_P
IPR020580GDC-P_N
Homology
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|585111298|gb|EWM28868.1| (glycine dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 206.838 bits (525), Expect = 1.301e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query:    1 MPEKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFGRPCRLKWRERRPS 103
            MPEKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFGRPCRLKWRERRPS
Sbjct:    1 MPEKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFGRPCRLKWRERRPS 103          
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|298708947|emb|CBJ30901.1| (Glycine dehydrogenase (decarboxylating) [Ectocarpus siliculosus])

HSP 1 Score: 90.5077 bits (223), Expect = 4.687e-19
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 0
Query:    5 IAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFG 90
            IA RI+G+A VTA+AL  AGF V    FFDT  VDV +KG ++  +A+A   +G N+RVID   +GL+FGE++TK +V  LL  FG
Sbjct:  391 IAERINGMAAVTAAALKEAGFGVSSEQFFDTFSVDVSAKGTSSTAIAQACEAKGANVRVIDDKTIGLSFGESITKDDVVALLEGFG 476          
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|223998052|ref|XP_002288699.1| (glycine decarboxylase p-protein [Thalassiosira pseudonana CCMP1335] >gi|220975807|gb|EED94135.1| glycine decarboxylase p-protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 85.8853 bits (211), Expect = 1.827e-17
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 0
Query:    3 EKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLR-AFG 90
            + I+ RIH LA V    LS+AG+ V  +PFFDT  VDV  KG+TAA V E AA  G N+R+ID   VGL+ GE +T+ ++  LL  AFG
Sbjct:  355 KNISGRIHALARVAHRELSNAGYGVTDSPFFDTFSVDVSKKGMTAAQVQEGAASVGANVRIIDENTVGLSMGEGITRDDLSALLSGAFG 443          
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|849129732|ref|WP_047994023.1| (glycine dehydrogenase (aminomethyl-transferring) [Puniceibacterium sp. IMCC21224] >gi|846954206|gb|KMK65699.1| glycine dehydrogenase, decarboxylating [Puniceibacterium sp. IMCC21224])

HSP 1 Score: 78.5666 bits (192), Expect = 7.356e-15
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 0
Query:    5 IAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFG 90
            IA RIH      AS L +AGF V+PA FFDT+ VDVG   L   GV +AA  +G+N+R +  THVG+   ET   A +E + RAFG
Sbjct:  358 IAQRIHRKTTRLASGLEAAGFVVEPATFFDTITVDVG---LLQRGVMQAAVTQGVNLRAVGKTHVGITLDETTRPATIEAVWRAFG 440          
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|219124701|ref|XP_002182636.1| (glycine decarboxylase p- protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405982|gb|EEC45923.1| glycine decarboxylase p- protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 76.2554 bits (186), Expect = 4.126e-14
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 0
Query:    5 IAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLL 86
            IA R+H LA V    +  AGF V   PFFDT  VDV SKG+ A  V   AA  G N+RVID   VG+A GE +T+ ++  LL
Sbjct:  389 IAGRVHALAAVGHREIGKAGFKVTEGPFFDTFTVDVSSKGMNATEVQAGAASVGANVRVIDEKRVGVAMGEGITRDDLGKLL 470          
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|1210524620|dbj|GAX16520.1| (glycine dehydrogenase [Fistulifera solaris])

HSP 1 Score: 76.2554 bits (186), Expect = 4.683e-14
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 0
Query:    5 IAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLR 87
            I++RIH LA V    +  AGF V    FFDT  VDV SKG+TAA V   A   G N+RVID   VG++ GE +T+ +++ LL 
Sbjct:  392 ISSRIHALAKVAHREIGKAGFKVSNDAFFDTFTVDVSSKGMTAAEVQSGAVSVGANVRVIDNNTVGISMGEGITRDDLKALLE 474          
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|1210511917|dbj|GAX29157.1| (glycine dehydrogenase [Fistulifera solaris])

HSP 1 Score: 76.2554 bits (186), Expect = 4.728e-14
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 0
Query:    5 IAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLR 87
            I++RIH LA V    +  AGF V    FFDT  VDV SKG+TAA V   A   G N+RVID   VG++ GE +T+ +++ LL 
Sbjct:  389 ISSRIHALAKVAHREIGKAGFKVSNDAFFDTFTVDVSSKGMTAAEVQSGAVSVGANVRVIDNNTVGISMGEGITRDDLKALLE 471          
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|397566636|gb|EJK45128.1| (hypothetical protein THAOC_36273 [Thalassiosira oceanica])

HSP 1 Score: 75.8702 bits (185), Expect = 7.259e-14
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 0
Query:    3 EKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLL-RAFG 90
            + I+ RIH LA V    L  AGF V   PFFDT  VDV +KG++A  V   A   G N+RVID   VG++ GE +T+ ++  LL  AFG
Sbjct:  399 KDISGRIHALARVAHRELGEAGFGVAEGPFFDTFIVDVSTKGMSADQVQAGAVAVGANVRVIDSNTVGISMGEGITREDLSALLSSAFG 487          
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|549984088|ref|WP_022574032.1| (glycine dehydrogenase (aminomethyl-transferring) [Rhodobacteraceae bacterium HIMB11] >gi|548322560|gb|ERL96625.1| glycine dehydrogenase, decarboxylating [Rhodobacteraceae bacterium HIMB11])

HSP 1 Score: 73.9442 bits (180), Expect = 3.141e-13
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 0
Query:    3 EKIAARIHGLACVTASALSSAGFAVDPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLLRAFG 90
            + IA RIH      A  L  AGF V+PA FFDT+ VDVG   L   GV +AA  EG+N+R +  T VG++F E   +   E + RAFG
Sbjct:  356 KAIAQRIHRKTVRLAKGLEEAGFTVEPAAFFDTITVDVG---LLQKGVIQAAVNEGINLRPVGKTKVGISFDERTRRETTEAVWRAFG 440          
BLAST of EWM28868.1 vs. NCBI_GenBank
Match: gi|1072228909|gb|OEU13644.1| (glycine cleavage system P-protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 73.559 bits (179), Expect = 4.553e-13
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    3 EKIAARIHGLACVTASALSSAGFAV---DPAPFFDTLCVDVGSKGLTAAGVAEAAAEEGLNIRVIDPTHVGLAFGETVTKAEVEGLL 86
            ++I  R+H L  V A  L++ GF +   +   +FDT+ VDV SKGLTAA V   AAE G NIR+ID   VG++ GE +T+ ++  LL
Sbjct:  357 KEIGGRVHALTRVAARELTAGGFKLVLNEAGEYFDTIAVDVSSKGLTAAEVQAGAAEAGANIRIIDDNTVGVSMGEGITRDDLFALL 443          
The following BLAST results are available for this feature:
BLAST of EWM28868.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111298|gb|EWM28868.1|1.301e-67100.00glycine dehydrogenase [Nannochloropsis gaditana][more]
gi|298708947|emb|CBJ30901.1|4.687e-1951.16Glycine dehydrogenase (decarboxylating) [Ectocarpu... [more]
gi|223998052|ref|XP_002288699.1|1.827e-1750.56glycine decarboxylase p-protein [Thalassiosira pse... [more]
gi|849129732|ref|WP_047994023.1|7.356e-1548.84glycine dehydrogenase (aminomethyl-transferring) [... [more]
gi|219124701|ref|XP_002182636.1|4.126e-1448.78glycine decarboxylase p- protein [Phaeodactylum tr... [more]
gi|1210524620|dbj|GAX16520.1|4.683e-1446.99glycine dehydrogenase [Fistulifera solaris][more]
gi|1210511917|dbj|GAX29157.1|4.728e-1446.99glycine dehydrogenase [Fistulifera solaris][more]
gi|397566636|gb|EJK45128.1|7.259e-1446.07hypothetical protein THAOC_36273 [Thalassiosira oc... [more]
gi|549984088|ref|WP_022574032.1|3.141e-1345.45glycine dehydrogenase (aminomethyl-transferring) [... [more]
gi|1072228909|gb|OEU13644.1|4.553e-1344.83glycine cleavage system P-protein [Fragilariopsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1809rna1809Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications