rna1808, rna1808 (mRNA) Nannochloropsis gaditana

Overview
Namerna1808
Unique Namerna1808
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length679
Alignment locationCM002458.1:204897..205557 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102699g1.10364.mrna
Orig protein idgnl|cribi|Naga_102699g1.10364
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:204897..205557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102699g1gene1737Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1808rna1808-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28869.1cds1804Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1808 ID=rna1808|Name=rna1808|organism=Nannochloropsis gaditana|type=mRNA|length=679bp
CTTCTGAGTCGTTGCGAAATATCCATGCTCACCGCTCCCATGCCATATTT
TTTCCCAATGTTTATAGAGCGTATAGATTTCATCTTCACTGTCTTTTTCG
TCGACAGCACCCTGCTGTGCTCGTTTCCTTGCTGTAACAGAGCATACGCA
GGTGTAGGATGTTGGCCCGACGAGTTTTGAACCAGGTAAGCGCCGAAGAC
CAGATCCATCCTATCAACAGTGATAAGCTCACCAACAAAACCCTCTTTGT
GGTATACAGGCCATTGTGCGCCGCCACGTGGCTTGTGTCGTTGCATCTGC
CCGGAGCAGCACCGGCCTCCACAGCAACGACAGCGGATCTCGCCGCTCTT
TGCCCAAGGCATGGACCCTCCGTCCCTCCCACTCCCTCTCCACCTCCGCC
CGCCTTGGAGCGGATGTTTTCACGCCCACGGACCAATTTGCCCACCGCCA
CATTGGCCCTTCCGTGGCGGAAGAGGCGGAAATGCTGAAATTGTGCGGCT
TCAAGACCTTAGAGGCCTTGACCGAGGCGGCCGTCCCAGGCCACATCCGT
CTGAAAGCGCCGGTGGATTTGGAGCCCGCCAAGAGCGAGAGCGAGGCCTT
GACCGAACTGAAGGCCATCGCCTCCAAAAACAAGGTGCTCAAGTCCTTGA
TCGGGATGGGGTACTACGAGACGGGTAGG
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protein sequence of rna1808

>rna1808-protein ID=rna1808-protein|Name=rna1808|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MAITRSERSSLSRRTPTPRTSASFRPVGNLWASRSWLETTGLSISPPKST
VGPSSSTPTPMERWMPTTSLCSGRTRPTSWSWQRRT
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mRNA from alignment at CM002458.1:204897..205557+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1808 ID=rna1808|Name=rna1808|organism=Nannochloropsis gaditana|type=mRNA|length=661bp|location=Sequence derived from alignment at CM002458.1:204897..205557+ (Nannochloropsis gaditana)
ATGGCCATGTCgaatgcctccctcctggacgaggccaccgccgcggcgga
ggcgatgaGCATGTGCTACTCTCTGAAGAACCAGAAGCGAAAGAAGTTCT
TTGTCTCGAAGGACGCCCACCCCCAGAACATCGGTGAGGCTTACCtggcc
ctctctccctccctccctccctccctccctccctccctgacccTCATTAT
CTCGTCCGGTttcaccttctccccgtctccACCATGTCTGCAAGCTTTCG
Tcctgatccctccctcctccctccctcctccctccctccctccctccctc
ctccctctctccctccctccctccaggcctcctTCAGACCCGTGGGAAAC
CTCTGGGCATCGAGGTCGTGGTTGGAGACCACCGGACTGTCGATTTCACC
TCCAAAGAGTACTGTGGGGCCCTCATCCAGTACCCCAACACCTATGGAAA
GGTAAgcgcagagggagggagggagggagggagggagagaaaggacagga
gggagggaggatgatcTAATCGTCTacccctcatccctccctctcccccg
tcctccctcccctcccctatTCCCTTCCACGGCCCTAGGTGGATGCCTAC
GACGAGTTTGTGCAGCGGGCGCACGCGGCCGACGTCTTGGTCGTGGCAGC
GACGGACCTGA
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Coding sequence (CDS) from alignment at CM002458.1:204897..205557+

>rna1808 ID=rna1808|Name=rna1808|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002458.1:204897..205557+ (Nannochloropsis gaditana)
ATGGCCATAACCAGAAGCGAAAGAAGTTCTTTGTCTCGAAGGACGCCCAC
CCCCAGAACATCGgcctcctTCAGACCCGTGGGAAACCTCTGGGCATCGA
GGTCGTGGTTGGAGACCACCGGACTGTCGATTTCACCTCCAAAGAGTACT
GTGGGGCCCTCATCCAGTACCCCAACACCTATGGAAAGGTGGATGCCTAC
GACGAGTTTGTGCAGCGGGCGCACGCGGCCGACGTCTTGGTCGTGGCAGC
GACGGACCTGAATGGCCATAACCAGAAGCGAAAGAAGTTCTTTGTCTCGA
AGGACGCCCACCCCCAGAACATCGgcctcctTCAGACCCGTGGGAAACCT
CTGGGCATCGAGGTCGTGGTTGGAGACCACCGGACTGTCGATTTCACCTC
CAAAGAGTACTGTGGGGCCCTCATCCAGTACCCCAACACCTATGGAAAGG
TGGATGCCTACGACGAGTTTGTGCAGCGGGCGCACGCGGCCGACGTCTTG
GTCGTGGCAGCGACGGACCTGAATGGCCATAACCAGAAGCGAAAGAAGTT
CTTTGTCTCGAAGGACGCCCACCCCCAGAACATCGgcctcctTCAGACCC
GTGGGAAACCTCTGGGCATCGAGGTCGTGGTTGGAGACCACCGGACTGTC
GATTTCACCTCCAAAGAGTACTGTGGGGCCCTCATCCAGTACCCCAACAC
CTATGGAAAGGTGGATGCCTACGACGAGTTTGTGCAGCGGGCGCACGCGG
CCGACGTCTTGGTCGTGGCAGCGACGGACCTGAATGGCCATAACCAGAAG
CGAAAGAAGTTCTTTGTCTCGAAGGACGCCCACCCCCAGAACATCGgcct
cctTCAGACCCGTGGGAAACCTCTGGGCATCGAGGTCGTGGTTGGAGACC
ACCGGACTGTCGATTTCACCTCCAAAGAGTACTGTGGGGCCCTCATCCAG
TACCCCAACACCTATGGAAAGGTGGATGCCTACGACGAGTTTGTGCAGCG
GGCGCACGCGGCCGACGTCTTGGTCGTGGCAGCGACGGACCTGA
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Synonyms
Publications