rna1805, rna1805 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1805
Unique Name	rna1805
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3916
Alignment location	CM002458.1:199320..201310 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100095g14.10168.mrna
Orig protein id	gnl\|cribi\|Naga_100095g14.10168
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:199320..201310 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100095g14	gene1734	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1805	rna1805-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28876.1	cds1801	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:199320..201310+
coding sequence from alignment at CM002458.1:199320..201310+

mRNA sequence

>rna1805 ID=rna1805|Name=rna1805|organism=Nannochloropsis gaditana|type=mRNA|length=3916bp
AATAACACGGCTGGCACGATCTGGCCTGCTTCTTACTCCATCGTCCGTAC
CTGCGTATTTCTGGTGTCTGAAATATAAGTGATGGTGCACCTGGCACATT
TTGAAGTTGGAGGCGAGTGTCATGACAAGCGAATGCCATGCGTATAGCCC
ACTCTACCCCTCCCCCTCCTCAAAAAAGGCAAATAGAGTAAGACGCAAAA
TCTGCCTGTTGCCATGGAGGGACGTTCGAGCCGGCCAAGTATTGAAGAAG
TTATTTGAAGTACTGCATCCAAAGGGCGTTTATCAAGATTGACGCTCGCA
CAGAGCAGGGCTGAGAATATTCCGTCTGAGATCAGCTCTGCGGTGTCTAT
GGCCGCCAAAGCAAAGGAAGGGGAGGCGCTTGCCCACCGAAGCGACGGGA
GCTGTCCAGAGAAAGATATGGTGACGGACGTGGTGGCCAAGAAGAAACGA
GGCCGTGGAAAAGACAGGAAGGTCGGCATGGTAGTGGAGTCTACCCCCCC
TCCCCCCCGGACCTTGCTGACTCGATGCACCCATGCCTGGAGGAGGATGT
ACGACCCGGACATGCGCGAGCGGATACGCGCCCATTTCGGTCAAAGCCTG
GGGGACCTGCCGGGAGATCCCGTGTGCAAGCCTTTTCACTGGTCGTTCCT
TTTGACGGCCCTGTGGTCCTCCCTAATTCTAACCGCGGCCGTGGTCGCCA
GTGCCCACATTGTCCTATCCGGGGGGGTCGTCCTCCTCTGGTTCCTCACG
CCTGCCTCCACCCTCCTCCTCTGCATCCAAGCCCGGGCCTGCTGGCCCTA
CACGTTCACCGCCATCGTCGGCGTGGAACTGACCGCCGTCTGTCTCGGAC
ACGGGCGTATCTCCCGAGACAGCTTGGCCGCCTTCATCATCATCGTGGTG
GACCTGCTCAACATCTCCCTGGGCACGCTTCTGCTTCGACCGTTGGTGGC
AGGGAGCATCCACATCGTCCGGACGTCCACCTTTGTGCGATACCTGGTGC
TCTACGTCCTCCTCATCACCCCCGCCTTCTCCCTGGTTAACGGGGGTATC
ATCGTCCTCCTCCCCTCCAACAACATCACCTGGATGGGGGGGCGGCAGCT
GGTGGTCGCCTGGCTCTTGGGTGATTTCTTCGCCACCTATTTTACCGTCT
ACGCGGTGCTCGTCTTCCGGTACACGATCGCGCAGGCCACTAAGGACACC
TACCGATGGAGGGACCTGGCCGTGTACCTGCAGGCTCGGCTCCGTGCCGG
GGGGATCTGGTTGTACCTACGTGTGGTGGAGTATGCGGGCGTGCTGGTCG
TCACCTACATGGTGGCGCACGCCGTGGCCACCTCCTCCACGTCCCCACGG
GATCACTTGGGGCCCCGGATCGTCTCCCGGTTGATGATCCCCCTGCTCGG
CTTCGTCACCTTCCGTTTCGGCCAGTTCGGCTCATGCGTGGCCCTGATCG
TGGCCGCGGCGGGGATCTTTACCGTCACCTATGGCCAGCTGGACAGGGGG
GACCGGCTCACGGACATTTTCTACCAGATCGACCTCCTCCTGGGCCCGAT
CGTCGTGGTTTTGATCACCTGGAGCATGACCTTTCTGGCCGTGGCGCTGG
CGGAGAAGCAGGATGGCTTGAGTTTGTTGGAGAAAAGAAATTTCCAGCTT
TTGGTGCAAGGCAGGGAGCTCCAGCAGGCCAAACTGGAGGCGCAGCGGGC
CCTCAGCGCCAAGACCGAATTCTTCGCCCGGGTATCATACGAGTTTCGGA
CGCCTCTCAACATCATTCTGGGATTTGCCGAGGAAATCAAACGCCAAGAC
CTGCCCCCCTACGTGCAAGAACGCATCGGTTACATCATTACGAGTGGCGA
GAGTCTTCTCAGGATTGTGGACGACATCCTGGAGCTGTTCCGCCTCTCTT
CCCAACGGCTGCAGATCGACGAATCCCTGGTCGACATTCACGCGTACTTC
ACCACCATGTGCGACCTCGTCCAAGTCATTACCGACAAGAGCCAGCGCCG
GCTGGAACGGGTTCAGGATCCCTCGCTCCCACGCTACGTCTTTCTGGACA
AGATTCGCTTCTCCCAGTTGGTCATGAATTTGTCGAGCAATGCCGCCAAA
TCGACCGGGACAGGGGGAAGGATTGTGCTCCGGCTCCGGCAGGTGAAAGG
AAGGGGGAAAAAAGGTGGCAAAGGCGTATTAATGAACTCCAGAGAGGCCA
GGGAGGCGAGGGGGAGGGAGGAACGGGAAGGGAAAGGGGTCCTAGAGGTG
GAGGAGAAAGGCGTGCGTGTGGACAAGCATGGGGGGGCTGGCGGCGGGAA
GGAGCCCGGGGAGGTGCCGGGGGAGGAAAGGATCGGAAATGATGCAGTGC
GTCACAAGAAGGGTCCAGGCAACGAGAAAACCAGCCCTAAGATAGGGTCC
CCCAAGAAGGAGAAGAGGGTGGCTGAGGGCAAGGGTATAGGGAAGAGTGG
GAGGCGACGGAGTCATCGTGTGATATGGCTTCGTTTAGAAGTGGAGGACG
ACGGGATCGGGATTCCCAAGAGCACGCAAAACCAGATTTTCAACTGCTTC
TACTCCGGTAATCAGCTGTCGGGGGGGGAGAAAGGCCATGGGTTAGGGCT
GGCGATCACCAAGGAGCTGGTGGATCTGATGAAGGGCTCCATCGAGGTCG
TGAGTGAGGTGGGGGTGGGCAGCCTGTTCACGGTGGATCTACCTGTCAAG
GTCTTGGAGGAGGAGGAGGGGAAACACAGCGCACAGAACGGGCGACAACT
GCGGAGGAGGCCTCGGGCTAAGCGGGCCGGGTCGCCGGCGGGGACGACGC
AGGGTCCCGAGGGCAATGGCCAGGACCCCGCCGGCGTGCGACCTCCTGCC
CGTGCCTCGACCCGGCCCCTGGACCCAGCGCGGGCGACAGATCCTGACAG
GGACACTCCACCAGCGCTCTCGTCTCCCGCACCCACTTTGCTTGAGGGCG
ACTTGAGAACCAGCGCGGTGGGAGTTTCCCCTCTGATGGAGGCGCCTTCT
CCTTTCCAACAGCCCCTGCATCGAAACCGACGGTTACACGGTCTGAGGAT
CATGGCTGTGGAAGACTTGTTGCCCAACCAAATGGTCCTGGGGGGAATGC
TTCGAGAAGACTCCCATTCGGTTCAATTCGTAGAAACTGCTTTTGGGGCC
CTGGAGATGCTTTCACGACATCCCGGTCATTTCGACGTGGCCCTGCTCGA
TATTGAACTCCCCGATGCGCATGGAGTCACAGTGTTGACTCGCATACGCT
CTCATCCTTCTCCCCGCATTGCGGGCATGCCTGTGGTCGTCGTAACGGCC
GTGGCCATGGATGGAGAGCGCAACCGGTGTTACCGGCACGGCGCCGATGA
TTTCGTGACTAAACCCATCCGACTTGGAACATTACGCGCCTCTTTGCTTG
CATTGTACAAAAGGGGACGCATTAAGCCAAGAGAGGGGATCAAGGTGGTA
GAAGACGGGAAGGAGGACAATGCTTAAAGAATTCATTGCAGGGAGTCCCG
TCTGGAAAAAAAAATTTGCATGGTTTGATGGTAAACATGACGTGTACAAT
GAGAAGAAAGAAATATGTCACAAATATCTTTGGAAGGATAGGTATGCACA
GATAAATTCTTTCCTGTTGCGGCAGAGGTGCGTGAAAAGCCACTAGTGAT
TACTTATCGCTCTTGCGCATGTAGCGACCACGACAATCTTTGCGAAGGCC
ACTTTCCAGAAGTGAACGGTATCTTTAAGGATAAACAAGTCAAAAAAATC
TGCGAGCGAATCATGGCACAGGCTCCGTAGAAGCTAGAGATACCAAAGAT
AGAGGAGTCTCTCTTACCTCACGTTCCATGAAAGTAGCTTTTCCGCGCAT
TGATGTGCCAAAAATATGCGAGACGTTCAAAATCTTCACATCGGTAATAT
TAAAAATAAGTATACA

protein sequence of rna1805

>rna1805-protein ID=rna1805-protein|Name=rna1805|organism=Nannochloropsis gaditana|type=polypeptide|length=552bp
MSHKNRTGKDCDHKDGLDSLLEECAVFVAPHPSSDEKMAPDSNCMNVTEE
DEWDDWETTKEPILSSTSDCSSSPLQPTLDEARVKFFQGQLQKYIQDLAD
PYILQEIESDLAKKHYKDFIEYFTDKPHMAQYTLDHELTRMSYKLVRSSG
APDRHHTYQDDMIVESYQRNSRKDSNYQHGPVDFSVSNPTEGNEFPVPKL
YVLAEDDPASIRAIHAICAQNLTWRFANQILFADMLETIQRRFFRADLEV
GVVSRDSKFVVDVDADSVEGTAIFHISLAGGTDGPVEVARLQGRIKVEVK
KQCLVQCVKLMRLLPVFDDTLARVASALVKHEHGAQEGREGEEGGWGWKT
TSHFPLTTLKKEMLAAGEGLMQAVTTVGKVLEEVAAEAALDERLQQGKGP
ESPEESCSIEEELKGSTDDPRRGCTFARGSEKGGGIVHVARDKREKGREG
GQEGGRGPTGALGWLQASESMLEGVVGGLGSLIGASGSQSGFGFHLPRGA
RVPPSPFSSKWVGAGSGGNGEEELERVQLYRREGEGEREKGTEVGGMDAC
EA

mRNA from alignment at CM002458.1:199320..201310+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1805 ID=rna1805|Name=rna1805|organism=Nannochloropsis gaditana|type=mRNA|length=1991bp|location=Sequence derived from alignment at CM002458.1:199320..201310+ (Nannochloropsis gaditana)
ACAGGGTTTCTAAACACCACCCATGAGCCATAAAAATCGCACTGGAAAAG
ACTGCGATCACAAAGACGGTTTAGATTCGCTGTTGGAGGAGTGCGCAGTC
TTCGTAGCGCCCCATCCTTCATCAGACGAAAAGATGGCTCCCGATTCGAA
CTGCATGAATGttacagaggaagacgaatggGATGATTGGGAGACTACAA
AGGAGCCAATCCTAAGCAGTACGAGTGACTGTTCTTCCAGCCCACTTCAA
CCGACGCTTGATGAGGCTCGTGTTAAGTTTTTCCAAGGGCAGCTTCAGAA
ATACATCCAAGACTTGGCAGATCCTTACATCTTGCAGGAGATCGAAAGCG
ACTTGGCCAAAAAGCATTACAAAGATTTCATTGAGTACTTCACCGATAAA
CCCCACATGGCTCAATACACATTGGATCACGAGCTTACACGTATGTCGTA
TAAGCTCGTGAGGAGCTCTGGGGCCCCTGACCGTCACCACACGTATCAGG
ATGACATGATTGTGGAGTCATATCAGAGGAACTCGAGGAAAGACTCGAAT
TATCAACATGGTCCAGTGGACTTTTCCGTATCGAATCCGACCGAGGGCAA
CGAGTTTCCGGTGCCAAAATTATATGTACTTGCTGAAGATGATCCAGCAT
CTATTAGGGCTATTCATGCGATATGCGCTCAAAATCTCACGTGGCGCTTC
GCGAATCAAATTTTGTTCGCGGATATGCTCGAAACAATACAGCGTCGCTT
CTTCCGTGCCGACTTGGAGGTCGGGGTGGTAAGCAGGGACTCAAAGTTCG
TGGTAGACGTGGATGCTGATAGCGTGGAGGGTACCGCTATTTTCCATATC
TCCCTCGCAGGGGGGACAGATGGACCTGTGGAGGTGGCAAGACTTCAGGG
GCGAATAAAAGTAGAAGTTAAAAAACAATGTTTGGTCCAGTGCGTGAAAC
TGATGCGTCTGTTGCCCGTTTTTGACGATACACTGGCCAGGGTCGCCTCT
GCGTTGGTCAAGCATGAGCATGGAgcacaggagggaagagaaggggaaga
gggaggatgggggtggaagacgaCATCGCATTTCCCACTCACAACcttga
aaaaggaaatgcTGGCGGCAGGCGAAGGTCTGATGCAAGCAGTTACCACT
GTAGGGAAAGTGCTCGAAGAGGTGGCTGCTGAAGCCGCCTTGGATGAGCG
GCTtcagcaaggaaaggggccaGAAAGCCCGGAGGAAAGTTGCTCGATTG
AGGAGGAGCTTAAAGGGAGTACAGATGATCCACGAAGAGGATGCACCTTT
GCTAGGGGAAGCGAGAAAGGCGGTGGCATCGTGCATGTTGCCCGTGacaa
gagagaaaaaggacgggaaggagggcaggaaggaggaagggggccaaCAG
GAGCCCTGGGGTGGCTTCAGGCTTCTGAAAGCATGCTGGAAGGCGTGGTG
GGCGGCCTCGGCTCTTTGATAGGGGCCAGTGGCAGCCAAAGCGGGTTTGG
GTTCCATCTACCTCGTGGGGCGCGAgtccccccttcgcccttttCATCAA
AATGGGTGGGGGCTGGATCCGGCGggaatggagaggaagagctggaaCGT
GTGCAGTTATAccgccgggaaggggaaggtgaaagggagaaagggaccGA
AGTGGGGGGAATGGACGCATGCGAAGCTTGAagacagggggaagggaggg
caggagaaaagggagggaaaacgagGACACATTTGTATTATTCGAGGCCG
TGCGGACACGCAATGCCTGCACAGCCGCTTTAAATCATCCCCAGTGCTCG
TCATGGGGTGTGGCACTACATGGTAGACGTAAAGTTGGACTCAATAGTGG
AAGCCAGCTGCGGCGTGGCTTCAAATTTCTTGAGCAAGTACCTTGTAATT
TATAATGACTTTGTTGTAATCTATGGAATACTCATTAAAGGACCTGTCGC
CTGGCGGTCACAGTAAACCATCcaaagcaagaaaagaaatC

Coding sequence (CDS) from alignment at CM002458.1:199320..201310+

>rna1805 ID=rna1805|Name=rna1805|organism=Nannochloropsis gaditana|type=CDS|length=1659bp|location=Sequence derived from alignment at CM002458.1:199320..201310+ (Nannochloropsis gaditana)
ATGAGCCATAAAAATCGCACTGGAAAAGACTGCGATCACAAAGACGGTTT
AGATTCGCTGTTGGAGGAGTGCGCAGTCTTCGTAGCGCCCCATCCTTCAT
CAGACGAAAAGATGGCTCCCGATTCGAACTGCATGAATGttacagaggaa
gacgaatggGATGATTGGGAGACTACAAAGGAGCCAATCCTAAGCAGTAC
GAGTGACTGTTCTTCCAGCCCACTTCAACCGACGCTTGATGAGGCTCGTG
TTAAGTTTTTCCAAGGGCAGCTTCAGAAATACATCCAAGACTTGGCAGAT
CCTTACATCTTGCAGGAGATCGAAAGCGACTTGGCCAAAAAGCATTACAA
AGATTTCATTGAGTACTTCACCGATAAACCCCACATGGCTCAATACACAT
TGGATCACGAGCTTACACGTATGTCGTATAAGCTCGTGAGGAGCTCTGGG
GCCCCTGACCGTCACCACACGTATCAGGATGACATGATTGTGGAGTCATA
TCAGAGGAACTCGAGGAAAGACTCGAATTATCAACATGGTCCAGTGGACT
TTTCCGTATCGAATCCGACCGAGGGCAACGAGTTTCCGGTGCCAAAATTA
TATGTACTTGCTGAAGATGATCCAGCATCTATTAGGGCTATTCATGCGAT
ATGCGCTCAAAATCTCACGTGGCGCTTCGCGAATCAAATTTTGTTCGCGG
ATATGCTCGAAACAATACAGCGTCGCTTCTTCCGTGCCGACTTGGAGGTC
GGGGTGGTAAGCAGGGACTCAAAGTTCGTGGTAGACGTGGATGCTGATAG
CGTGGAGGGTACCGCTATTTTCCATATCTCCCTCGCAGGGGGGACAGATG
GACCTGTGGAGGTGGCAAGACTTCAGGGGCGAATAAAAGTAGAAGTTAAA
AAACAATGTTTGGTCCAGTGCGTGAAACTGATGCGTCTGTTGCCCGTTTT
TGACGATACACTGGCCAGGGTCGCCTCTGCGTTGGTCAAGCATGAGCATG
GAgcacaggagggaagagaaggggaagagggaggatgggggtggaagacg
aCATCGCATTTCCCACTCACAACcttgaaaaaggaaatgcTGGCGGCAGG
CGAAGGTCTGATGCAAGCAGTTACCACTGTAGGGAAAGTGCTCGAAGAGG
TGGCTGCTGAAGCCGCCTTGGATGAGCGGCTtcagcaaggaaaggggcca
GAAAGCCCGGAGGAAAGTTGCTCGATTGAGGAGGAGCTTAAAGGGAGTAC
AGATGATCCACGAAGAGGATGCACCTTTGCTAGGGGAAGCGAGAAAGGCG
GTGGCATCGTGCATGTTGCCCGTGacaagagagaaaaaggacgggaagga
gggcaggaaggaggaagggggccaaCAGGAGCCCTGGGGTGGCTTCAGGC
TTCTGAAAGCATGCTGGAAGGCGTGGTGGGCGGCCTCGGCTCTTTGATAG
GGGCCAGTGGCAGCCAAAGCGGGTTTGGGTTCCATCTACCTCGTGGGGCG
CGAgtccccccttcgcccttttCATCAAAATGGGTGGGGGCTGGATCCGG
CGggaatggagaggaagagctggaaCGTGTGCAGTTATAccgccgggaag
gggaaggtgaaagggagaaagggaccGAAGTGGGGGGAATGGACGCATGC
GAAGCTTGA

Synonyms

Publications