rna1800, rna1800 (mRNA) Nannochloropsis gaditana

Overview
Namerna1800
Unique Namerna1800
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1361
Alignment locationCM002458.1:179627..180601 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100095g8.10167.mrna
Orig protein idgnl|cribi|Naga_100095g8.10167
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:179627..180601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100095g8gene1729Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28875.1cds1796Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1800rna1800-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1800 ID=rna1800|Name=rna1800|organism=Nannochloropsis gaditana|type=mRNA|length=1361bp
GTAGCTCCCACAACAATGCAAACCACCTCAACCCCAATCCGACCACCAAT
AGGAATATTTTGGCGTTGTCAGAAGATTTCGATGGGGAACCACGACCATG
CTTCCTTCGAAAGCCCTTCCACGCCGGCCGCAGCTTCCTTCCCATATGCC
CCCTGGCGCCGGTCCTTGCGACACTCCAAGCGCCCTCGAGAAAGAGATAA
GAAAGAGGATGTAAATAAAAATATGGCAGAGACGTTCTTGCCTCTCTGTC
TTTGGGACTTTGAAGAAGAGGGGGAGGTTGAGGAAAGAACTGTTGTCGTG
GAGGAAGAGGTGAAGGAAGCTTATGGGGAGGATACGAGGCTCGACGAGTG
CAGTACTGAAGGACAAATTGCCAGTAACGTAACCGAACCAGATGAGGAAT
GGATGCTCGCGGACACATCAAAATTTGACGAAAAGGCTACGTCTATTCAA
TTGCGTAAGGAAGGATTGCCGATTTACGTGACCTTCGGCGCATTCAAGGG
AGTCAGCCTGCCCGCCCTCGGACGCATGGAGGGTGGTCGTCAATATCTCG
ACCAGTTCTTGGCCCGTAAACCGGGTTGGTTCGAGCGTGGCTCGGTCCCC
GCGAACATGGCTCTCCTTCGCTCCCTCTCTCGCCTCCGCCTCCTCCGGTA
CGTGACTGACCTCAACGGTAACGTCGTGCCCGCCACACGCATGGTCCGAA
ATTGGGAGCTGAGACAGGAAAGAAACCAGCAAGCCTCCCGAGAAACACGC
TGCCTGCACCGACAGAGGCAGCGACGACGGGCCAAAGCAGCGCTGAGAAA
GGGCTCGGTCGCTTTAGACAGACACATGGAAAGCGAGGTGGCGGACGAGA
GCAGAAAAGATGCGGCCACGGCGAGAGGTGGGGACAAAGCACGTGTACCA
ATGAGGCCACCGCCGCCGCGGGTGGTACGGAAAGGTACTGGCTACCAGAC
ACCGCCGCGCTGATCAGGCGGAAGGGTCACTTGCAAACCGTGGGAAGACG
CCCGGTCCACCGATCCGGTTTTCAAACCTTCGGAGACCGTGATTTCCCAA
TAAACGTGCTGTAAACATCCCCAAGACGATGCTCTCCCTTCGGGGGGTCC
CTCCAGTCTCGAACGAGGCCTTGACGCCCTTTATATGGGGGACAATTTCC
TGCGAAAACCTGCGTCATTGCGACTCAAAATCAAGTACAGCTCCTCAAAG
ATGATAGATATGCCCTTGTCCACGTAAATCAAGATCTGTGCATGCATTAA
ATCAATTGTGGTCGTGTCGCTTTTCAAGTGATCCATCTTATTTGCCAGCC
CGTAATTATCTAACCATACAAAGGAAAGACAATCGAACAGTAGCATTTAG
CTATCTACGCC
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protein sequence of rna1800

>rna1800-protein ID=rna1800-protein|Name=rna1800|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MRPAFHSHRADLFETAPGDRGELLVLCAACVGTSGVCQRLFTSSAHFPPY
PSPQVHSHRRRTFAAAFIMASVISSPKKEASVMSEPSTFPDGPGRASPGL
ALPRLRMSVSDTPGILCRPLLLPSISNQLNMEDASKNTLSNKTWQTSLTE
EEREVVRLKIMAAYKRQAKTYEDVLNVAAALQEEECFGRAPSRLDYIKDT
VQFSHRLGEAKKKLVSGRGKGSGAEKQAEVKEKEPTHSDTGGTRKRGRSE
AVEINTVSDKQIKEGHGAGEGENSKKKRGEKGQTRGREQDPCTRLEGGSN
TSAKFTMNAAGCRGKISEQPKGKE
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mRNA from alignment at CM002458.1:179627..180601-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1800 ID=rna1800|Name=rna1800|organism=Nannochloropsis gaditana|type=mRNA|length=975bp|location=Sequence derived from alignment at CM002458.1:179627..180601- (Nannochloropsis gaditana)
ATGCGACCAGCCTTCCACTCGCACAGGGCTGACCTGTTCGAAACCGCGCC
GGGTGATCGAGGAGAACTCCTCGTGCTGTGCGCTGCTTGTGTGGGGACAA
GTGGTGTATGTCAGAGACTGTTCACTTCTTCGGCACATTTTCCACCCTAC
CCTTCCCCTCAGGTACACAGCCACCGTCGACGGACCTTCGCGGCTGCTTT
TATCATGGCATCTGTGATTTCATCCCCTAAAAAGGAGGCATCAGTCATGA
GTGAACCCTCTACATTTCCTGATGGACCCGGTCGGGCTTCACCTGGTTTA
GCACTGCCTCGCCTTCGCATGTCCGTGTCCGACACGCCCGGCATCCTCTG
TCGTCCTCTATTGCTTCCGTCCATCTCGAATCAGCTCAACATGGAGGACG
CTAGTAAAAACACGCTTTCGAATAAGACATGGCAAACCTCCTTAACAGAG
GAGGAACGGGAAGTCGTTCGATTGAAAATCATGGCAGCGTACAAACGTCA
GGCAAAAACTTACGAAGATGTCTTGAATGTGGCCGCAGCTCTTCAAGAGG
AGGAATGTTTCGGCCGAGCCCCCTCGCGATTAGACTACATCAAAGACACG
GTGCAATTTAGTCATCGACTGGGTGAGGCAAAGAAAAAACTGGTGAGCGG
AAGAGGAAAGGGAAGCGGTGCAGAAAAGCAGGCGGAGGTGAAAGAGAAGG
AGCCTACGCATTCTGATACAGGCGGGACACGAAAAAGGGGACGTTCAGAG
GCTGTGGAAATAAATACTGTGAGTGACAAGCAGATCAAGGAAGGTCATGG
GGCAGGTGAGGGGGAAAACAGCAAGAAGAAGAGGGGAGAAAAGGGGCAAA
CACGTGGGAGGGAGCAGGATCCATGCACACGTTTGGAAGGAGGAAGCAAT
ACATCAGCAAAATTCACAATGAATGCAGCAGGGTGCAGGGGAAAGATATC
AGAGCAGCCAAAGGGAAAAGAATAA
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Coding sequence (CDS) from alignment at CM002458.1:179627..180601-

>rna1800 ID=rna1800|Name=rna1800|organism=Nannochloropsis gaditana|type=CDS|length=975bp|location=Sequence derived from alignment at CM002458.1:179627..180601- (Nannochloropsis gaditana)
ATGCGACCAGCCTTCCACTCGCACAGGGCTGACCTGTTCGAAACCGCGCC
GGGTGATCGAGGAGAACTCCTCGTGCTGTGCGCTGCTTGTGTGGGGACAA
GTGGTGTATGTCAGAGACTGTTCACTTCTTCGGCACATTTTCCACCCTAC
CCTTCCCCTCAGGTACACAGCCACCGTCGACGGACCTTCGCGGCTGCTTT
TATCATGGCATCTGTGATTTCATCCCCTAAAAAGGAGGCATCAGTCATGA
GTGAACCCTCTACATTTCCTGATGGACCCGGTCGGGCTTCACCTGGTTTA
GCACTGCCTCGCCTTCGCATGTCCGTGTCCGACACGCCCGGCATCCTCTG
TCGTCCTCTATTGCTTCCGTCCATCTCGAATCAGCTCAACATGGAGGACG
CTAGTAAAAACACGCTTTCGAATAAGACATGGCAAACCTCCTTAACAGAG
GAGGAACGGGAAGTCGTTCGATTGAAAATCATGGCAGCGTACAAACGTCA
GGCAAAAACTTACGAAGATGTCTTGAATGTGGCCGCAGCTCTTCAAGAGG
AGGAATGTTTCGGCCGAGCCCCCTCGCGATTAGACTACATCAAAGACACG
GTGCAATTTAGTCATCGACTGGGTGAGGCAAAGAAAAAACTGGTGAGCGG
AAGAGGAAAGGGAAGCGGTGCAGAAAAGCAGGCGGAGGTGAAAGAGAAGG
AGCCTACGCATTCTGATACAGGCGGGACACGAAAAAGGGGACGTTCAGAG
GCTGTGGAAATAAATACTGTGAGTGACAAGCAGATCAAGGAAGGTCATGG
GGCAGGTGAGGGGGAAAACAGCAAGAAGAAGAGGGGAGAAAAGGGGCAAA
CACGTGGGAGGGAGCAGGATCCATGCACACGTTTGGAAGGAGGAAGCAAT
ACATCAGCAAAATTCACAATGAATGCAGCAGGGTGCAGGGGAAAGATATC
AGAGCAGCCAAAGGGAAAAGAATAA
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Synonyms
Publications