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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100095g4.10171.mrna |
| Orig protein id | gnl|cribi|Naga_100095g4.10171 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:169648..171747 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1797 ID=rna1797|Name=rna1797|organism=Nannochloropsis gaditana|type=mRNA|length=1754bp
AAAGGTAGTTTACGTGTATGTGTCCGAAAAATGCGAATATATACTTTGTG
TGGAAAACCGCTCCTGGCCACCCACTCGCCCGTGTCCTTCCCCTTGCCCT
GGCAACACCACCTTAAAGGATGGATACCCAAGTACGAAGGTGTTGTGGTA
TGATACACGTATGTCTCTTTGCACAATTCGTCAGGGAGAGAGGCAGGGCG
TCCCCGTGGCTGTGTTTTTTTTTTCCTCAGACATTCTGCTTGTAGCTCGC
TGTCGCCCGGCCCTACTGGAATGGACACGCAAGTGTATCTACCCTGGCAC
TTTACCCTCCTAGTTGCCCTTGTTACGGCGTCCTTCTAACCGACCATCAA
CCATTTTGATAACCCACACAAGTTCAGGATGGGTGGCCGACGCATTCTTG
TGGCCCTCGCTGTCATTCCTGCTGTTGCAGGATTCATGCTCTCGGGTAGT
TTCAAGGGCCAACAGTCTCAGTCTCTGCTCCGTCCCTCCATCCAAGCACA
CCGTGCTGGCGCGGGATCACTGACGATGCGCCTTTTCGATCACAAGCGTC
GAGATATGAAGTTCATTGAAGACATTATGGGGCATCCTGGCGTGGGAGAC
GAGGGACACAAGGAACCTAGCGTGACAAATCTTCGCCCTTTCCCAGGAAA
CTACCCCAAGAAACACCGAAAGGGCCGCGGGAACGCCGGGGGCGGAGGTG
GCTCGAGTGGCTACGGAATGCGCGGGCAAAATTCTCGTGGGGGGGTCCGC
CCTGGCTTCGAGGGAGGTCAGACGCCGTTGTACCGACGCACGCCCAAGTG
GCCCGGTCGCCCGATGGGCCCGGGACACAAACGAACCCGCTATGCCTTGG
TGCAGGTGGAACACCTGAACGAGGCCGCCGATTATTTCCCCAGTCGGACT
ATTATTGACCCCGGTTTCCTCCTCGATCAGTGCGTGCTTACCAAGCAAAA
ATTGGATCTCTTCAAGGTGGTGGGTGGCGACGTGCCTTTGACCCGCCCTT
TGACAGTTCTGGCCCACGGTTTCACGGCTTCGGCCGCCGCCGCCATCGAG
GCGGCCGGAGGGAAGTGCGTCTTGCTGTCGCCGACGACCAACGAGGTAGT
GGAAATGGAGGGCTTGAATGTGGACGAGATCCTTGCGCAACTGGACAAAG
AAGAGGCAGCGACAGAAGCGGAGGAGGCGGAAGGCAAATACGTGGATGTG
CCCCGACCTGGGGGCGCGCGCGAACGGATCCGTGCTGAAATCAGACGGGA
GGATAAAGAGGCCTATGCTCGGCTAAACAACGCATAGGAGCCGAGAAGGA
AGTGAACCAAGGGCTGATTAGAGGGTGGGTCCTTGGCCGAAAGAAAAGGA
GTGGGTGGCGTGGAAGTTTCTTCTATACATACGACGACAATATTGTGGAA
AGGCTGGGAGCATGCGCTCTTGGTCGACGTCCCCACAGATGATAATTCAA
GGTCCGATTGGCTGATACTCCTCACGGACATGCGTGAAAAAGCGGAAGGC
TGGTGTCTCTGATGACCTGAAATGGTGACAGAGTGATGCAAAAGGTGCTG
TGGTGATTGCACAGCACGCATTGGAGGACAAGCATAGTCATTCATACAAG
AAGGAATCTTTCGATCCAAGTTTAGTGGGATGTCGATGTTGAGGGCAGAT
CTAAAGAAGTACACGAGACTCAAACGGAGCGCGGGAGTCGAAAACGTTTG
TTATCAATTGTCACAGTGTCTTAACTCCCGATGATCCCGATGAACATGCT
CCTC back to topprotein sequence of rna1797 >rna1797-protein ID=rna1797-protein|Name=rna1797|organism=Nannochloropsis gaditana|type=polypeptide|length=639bp
MTRHIRGTPLNVRPGILRIALVVTAVFLVLPTLCVPLLRELKGMDGFPST
LRVALVLGGAAAWAIASFTSATVWLTLSLAVTLASGLSYMSILGLVQPTL
IMPATAPLFVAGLMSVPVLASFDVILLLGVMGGLGSQGVHRVQDGAHIET
FVLGTLAVLCLLASPGVIGHTASRVLSPLHTNIFTLPIPVLAAVYPFLQP
SLPNFFIGGLTLTLCLAMCLSDAPAATVAARDNARGSHWLLAALLTTLCL
LISLTPDDSHALAALNAYTLIMTGTGVAVASTSFLASTARVWGPVRSGEF
QMVTLDFVALAAYFALPLLYVLYLGLQQLLHAPLSLPFAIPPGRLPDLAW
LPKWLQPLGLSHPLGPATLLTWMVVSTQDAFEESSILWAHWLVETYTLGR
LDTRLVALLVSLQDLLRHAPSAAGASEDEVPPGTMATSNAGAKQIEDTRP
QGLEALLARTEMPRLNIFVTPGLAAAYPTLCTSLVRHGHYLGVETAAGPF
ASPWTVMDTVSRGVRAVKQALVAGGTRGDLAGYMGSDGHRNPWALWRAKS
LQLRFIAPVHRVVLGDNAGLRLCELLNPWCQGGLVKVEVGAQGSSGYVHL
AATLLDLKERAEEGGYVISALSEVCPVVKPMVLPAEQGR back to topmRNA from alignment at CM002458.1:169648..171747+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1797 ID=rna1797|Name=rna1797|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp|location=Sequence derived from alignment at CM002458.1:169648..171747+ (Nannochloropsis gaditana)
CATGTTTCAATAATCCAGTAGTCGATTTCTCTGACAAAagtctttttcct
tttcctccatagGGCCTGAATTTCGTTCGTCATGACTCGCCACATTCGCG
GCACACCTCTCAACGTCCGGCCCGGTATTCTCCGCATTGCCTTGGTAGTC
ACGGCCGTCTTCCTGGTCCTGCCTACGCTATGCGTGCCATTGCTACGTGA
GTTGAAGGGGATGGACGGCTTTCCGTCAACCTTGAGGGTCGCCCTAGTAt
tgggaggggcagcagCATGGGCGATAGCCTCTTTCACCTCTGCAACTGTT
TGGTTAACGCTCAGTCTAGCAGTCACGTTGGCCAGCGGACTTTCCTATAT
GTCGATTTTGGGGCTCGTCCAGCCCACATTAATAATGCCCGCAACCGCCC
CCTTGTTCGTCGCTGGGTTGATGAGTGTTCCTGTCCTCGCGTCGTTCGAC
GTAATTTTGCTTCTGGGCGTCATGGGTGGCCTTGGCTCGCAGGGTGTGCA
TCGTGTCCAAGACGGGGCCCACATTGAAACATTCGTGCTGGGCACGCTGG
CGGTGCTTTGCCTGCTGGCATCGCCTGGCGTGATAGGGCACACAGCGTCA
AgggtcctctcccctctccacacAAACATTTTCACACTGCCCATACCCGT
TCTGGCCGCCGTGTACCCTTTCCtacaaccctccctccccaattTCTTTA
TTGGCGGCCTCACTCTTACCCTATGTCTTGCCATGTGTTTGAGTGACGCA
CCTGCGGCCACGGTGGCGGCCCGCGACAATGCCCGGGGGTCTCATTGGTt
gcttgctgccctcctgaccaccctctgcctcctgatCAGCCTGACGCCGG
ATGACAGCCACGCTCTCGCAGCCTTGAACGCGTACACCCTCATCATGACC
GGCACcggggtggcggtggcgagcACGTCATTTCTGGCTTCCACGGCCCG
GGTCTGGGGGCCGGTGCGCTCGGGCGAATTCCAAATGGTCACCTTGGATT
TTgtggccctggccgcctatttcgcccttcctcttctctacGTCCTGTAC
CTTGGTCTTCAGCAGCTTCTGcacgcccctctttccctcccctttgcgAT
CCCCCCCGGCCGACTCCCAGACTTGGCCTGGCTCCCGAAGTGGCTGCAGC
CCTTAGGTCTCTCTCACCCCTTGGGCCCCGCCACGCTCCTGACATGGATG
GTGGTCAGTACCCAAGACGCCTTTGAAGAATCCTCCATCCTGTGGGCGCA
TTGGCTGGTGGAGACGTACACCTTGGGGCGTCTGGACACACGgctcgtcg
ccctcctcgtcagccTGCAGGACCTGCTCCGACATGCCCCTTCCGCCGCG
GGGGCctcggaggacgaggtcccACCCGGTACCATGGCTACAAGTAACGC
GGGGGCCAAGCAAATCGAAGACACGCGTCCTCAGGGTTTGGAGGCCCTCT
TGGCGCGGACGGAGATGCCTCGCTTGAACATCTTCGTCACCCCTGGTTTG
GCCGCTGCATACCCCACGCTTTGTACGTCCTTGGTACGGCACGGGCATTA
CCTTGGGGTGGAAACCGCGGCTGgccccttcgcttccccttgGACGGTCA
TGGACACGGTCTCCAGAGGCGTCCGGGCGGTCAAACAGGCCCTTGTGGCC
GGGGGAACCAGGGGGGACCTGGCGGGGTACATGGGATCGGACGGACATCG
GAATCCGTGGGCGCTTTGGCGGGCCAAAAGCTTACAATTGCGTTTCATCG
CACCTGTGCACCGGGTGGTCCTGGGAGACAACGCAGGGTTGCGCTTGTGC
GAGCTTTTGAATCCGTGGTGCCAAGGGGGGTTGGtaaaggtggaggtggg
ggcacAAGGGAGCTCAGGCTACGTACATCTGGCGGCGACTTTGCTGGATT
TGAAGGAAAgagccgaggagggagggtacgTGATCTCAGCGCTTTCGGAG
GTGTGTCCCGTGGTGAAACCCATGGTATTACCCGCCGAGCAGGGGAGATG
AAGTTGTGTCGGGGTCCGAAAATAGGTGTCAAGGTTGGTGTGGGTGCGTT
CTCATGTAAACATTGTGACATAGAAAGTCTATTCACTGAGTGCACTGATT
back to topCoding sequence (CDS) from alignment at CM002458.1:169648..171747+ >rna1797 ID=rna1797|Name=rna1797|organism=Nannochloropsis gaditana|type=CDS|length=1920bp|location=Sequence derived from alignment at CM002458.1:169648..171747+ (Nannochloropsis gaditana)
ATGACTCGCCACATTCGCGGCACACCTCTCAACGTCCGGCCCGGTATTCT
CCGCATTGCCTTGGTAGTCACGGCCGTCTTCCTGGTCCTGCCTACGCTAT
GCGTGCCATTGCTACGTGAGTTGAAGGGGATGGACGGCTTTCCGTCAACC
TTGAGGGTCGCCCTAGTAttgggaggggcagcagCATGGGCGATAGCCTC
TTTCACCTCTGCAACTGTTTGGTTAACGCTCAGTCTAGCAGTCACGTTGG
CCAGCGGACTTTCCTATATGTCGATTTTGGGGCTCGTCCAGCCCACATTA
ATAATGCCCGCAACCGCCCCCTTGTTCGTCGCTGGGTTGATGAGTGTTCC
TGTCCTCGCGTCGTTCGACGTAATTTTGCTTCTGGGCGTCATGGGTGGCC
TTGGCTCGCAGGGTGTGCATCGTGTCCAAGACGGGGCCCACATTGAAACA
TTCGTGCTGGGCACGCTGGCGGTGCTTTGCCTGCTGGCATCGCCTGGCGT
GATAGGGCACACAGCGTCAAgggtcctctcccctctccacacAAACATTT
TCACACTGCCCATACCCGTTCTGGCCGCCGTGTACCCTTTCCtacaaccc
tccctccccaattTCTTTATTGGCGGCCTCACTCTTACCCTATGTCTTGC
CATGTGTTTGAGTGACGCACCTGCGGCCACGGTGGCGGCCCGCGACAATG
CCCGGGGGTCTCATTGGTtgcttgctgccctcctgaccaccctctgcctc
ctgatCAGCCTGACGCCGGATGACAGCCACGCTCTCGCAGCCTTGAACGC
GTACACCCTCATCATGACCGGCACcggggtggcggtggcgagcACGTCAT
TTCTGGCTTCCACGGCCCGGGTCTGGGGGCCGGTGCGCTCGGGCGAATTC
CAAATGGTCACCTTGGATTTTgtggccctggccgcctatttcgcccttcc
tcttctctacGTCCTGTACCTTGGTCTTCAGCAGCTTCTGcacgcccctc
tttccctcccctttgcgATCCCCCCCGGCCGACTCCCAGACTTGGCCTGG
CTCCCGAAGTGGCTGCAGCCCTTAGGTCTCTCTCACCCCTTGGGCCCCGC
CACGCTCCTGACATGGATGGTGGTCAGTACCCAAGACGCCTTTGAAGAAT
CCTCCATCCTGTGGGCGCATTGGCTGGTGGAGACGTACACCTTGGGGCGT
CTGGACACACGgctcgtcgccctcctcgtcagccTGCAGGACCTGCTCCG
ACATGCCCCTTCCGCCGCGGGGGCctcggaggacgaggtcccACCCGGTA
CCATGGCTACAAGTAACGCGGGGGCCAAGCAAATCGAAGACACGCGTCCT
CAGGGTTTGGAGGCCCTCTTGGCGCGGACGGAGATGCCTCGCTTGAACAT
CTTCGTCACCCCTGGTTTGGCCGCTGCATACCCCACGCTTTGTACGTCCT
TGGTACGGCACGGGCATTACCTTGGGGTGGAAACCGCGGCTGgccccttc
gcttccccttgGACGGTCATGGACACGGTCTCCAGAGGCGTCCGGGCGGT
CAAACAGGCCCTTGTGGCCGGGGGAACCAGGGGGGACCTGGCGGGGTACA
TGGGATCGGACGGACATCGGAATCCGTGGGCGCTTTGGCGGGCCAAAAGC
TTACAATTGCGTTTCATCGCACCTGTGCACCGGGTGGTCCTGGGAGACAA
CGCAGGGTTGCGCTTGTGCGAGCTTTTGAATCCGTGGTGCCAAGGGGGGT
TGGtaaaggtggaggtgggggcacAAGGGAGCTCAGGCTACGTACATCTG
GCGGCGACTTTGCTGGATTTGAAGGAAAgagccgaggagggagggtacgT
GATCTCAGCGCTTTCGGAGGTGTGTCCCGTGGTGAAACCCATGGTATTAC
CCGCCGAGCAGGGGAGATGA back to top
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