rna1794, rna1794 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1794
Unique Name	rna1794
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4800
Alignment location	CM002458.1:150501..151717 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100095g1.10170.mrna
Orig protein id	gnl\|cribi\|Naga_100095g1.10170
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:150501..151717 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100095g1	gene1723	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1794	rna1794-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28878.1	cds1790	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:150501..151717+
coding sequence from alignment at CM002458.1:150501..151717+

mRNA sequence

>rna1794 ID=rna1794|Name=rna1794|organism=Nannochloropsis gaditana|type=mRNA|length=4800bp
GAAGGAGAACGTTCAGACTATTCCCTTATAGCACCAGGGGCCCGGCGCCT
CCAGGATACCGTACTTGAAATGCCAAAAACCAAGAAAACACGCATTGAGA
AAAATTATTGTACCGACACAAGGTTTAATTCTCCCACAGGAGGTGTGAAC
TCCAAAAAATGAACACTTGGCGTGTTACAGTCACTCAAAAGGACGCCACA
TACTAGTCTTTCACAGGGAGGTGGTTCTGCTTCTCTCGTACGTCGTTTCC
TAGCATGTAAGATTTGCACATCGAGTGCCAGTCTTTTATTTCTCACATTT
GGATAATGTTAAAGAGGTGAAAATTCAACATCCTGGTCATGGAAAGAGGC
GTTGCAAGCACATGGATTGTGTCTCTGTGATCTGTTAGTTTTCCTCAGAC
TCGCCCGAACTTTCAGACCCTCTCAGTATCCGCCGACCACATTGTGGCTT
GTGGTCATGTACGTGCGCAAATGTCGCATCATTAGGCCCATCATTCCCAT
TGCTGGACGGATATAGGACTTGTCGACCTTTAATACAGAGCTTTCTGGTT
GGACGTGATTTTTCCCCCTCCTAGCTGCGTACTTGAAGAGCCTGACATAT
TTTCGTCTTCGCTGCTGCACCTCCCGCCCTGCCGCCCAACTGGACATATG
GTGCCAATTACTTGCCGAAGATCCACTCACGTATAGTTACAACCACAAAA
CTTAACAACAGCCCCTTCGTGCGAACACCTGAAAGTCGGCACTGCATGGG
ATGAGATTCCGGTTGGGAGAAAAAGCTCTACCTCCCACCACAGGGACACT
GCTCCGGATGCAACACAAGGTCCTCCGCCCTCTGCTGGCTCCCGCGTTTT
GTTCCATTTTCTGCACCATCGTATTTCCCTTGGTACTGGCCCAACAACCA
TCTTATGCTGACTCGCGGACAAAGCTGCCGTCTGGGGCTCGCACGGCACC
AGAAGCCAGCCCGGCCGTGGCATCCCCCCCCTTCCTAACGCCAAGCACCA
CAGCGGCCCCCGGTTTTCAAGTCTTCCGGAAATTTCTGCCTCCAAACACG
TCCACGTGGCGGGATGGACGTTTGAGCGGACAGATCGAGGAGGCCTGGAT
GCCTTTCAGGCCCCTTCCTCCGTTGGCTCTGCGGACGACCCGGGATACGA
CATGGCAATTTTTGCCACAGGACAGCTCCAAGTCCGTGCTTTTCGTGCCC
GTGGAACACTCTCTCAAATTTTTTCGCACCTTTAGGTGGGAAGAGACCTT
CACTGGCCTCTCTCCCTGGTCAAGTCGGCCTGATTTGGAGATGGTCTTTG
TGCCCATGACAGAGAGCACGGACGCCGCCGCCCTGGTTCGAGAGGCGGAG
ACAGCCTTGGCCGCCATCCCCCGAGATGCCGAGTTCTGGCTCCCTCGCAT
GCATTTCTCCCTCGACACGGTGGACAGTCTTCGGGAGAAGCATTCCTGGT
TCGCCGACTGCGTGGACGCCTGGAGCATGCCCGCCACCACGGTCGGGGTC
CTGTGGAACCCATCTGAGCGAGCAGGGCAGGCGGAAACTGCGACATCTTT
GAGCTTGTTCGACGCTACCCCGCCGATTTCGGGCCTGGCAACGCCGGGGC
CAGGGGTGCTGGGGGGATGCGGGGACGAGATTGCGGGCGGGACGTGTGGG
CATCTGGCTTTCTTTGGGAGCGCCTGTCTCGTCCAGGGGGGCGCGGGGCT
AGCGGTTCCCCCCTTGCCTGTGCAGGATGTGGAGGGGAAAGTGGCTTTGG
TCGCTCGCGGGGGGTGCTCCTTCGCGGAAAAGGTCCGGGTCGTCAAAGGG
GCAGGGGCGATTGCGGCCATAATTTACAGCGACGAGCACCCCCGGACAGC
CTGGCTGGCCACCGAAGAGGAAGGGGGCGAGGCGAAGGTCCCCTCGATGA
TCACTCCCGAGTCCTTTCCTTTGGCATTGATCGACCAGGCGCCCGGCCAG
TGGTTGCGCGACACCTTGGTCGACTCGCAGGGAGGCAGGAATATGAGTGT
GGCCCTGTTCGAACGGACTAGCGCCCCGTGGGCCTTCGCCGCTGACGGGA
CCGGTCATTTTCGGCGACTGGTTCGTGGGGACGCGTCTTTGGCAGCCGCC
ATCTTGGAAGCGACAAAATTTGAATACGAAGCGCTGGTGGCAAAGAGCAA
TCCTCCCGCGGCCGAACTGGGCCTGGGGGCCACGACGGTGACGGTCCCTG
TGATGAAGGGAGAGCAGACTGTGGGCGAGAAAGCGACCCGGATGTTGGCG
AAAGAGGTGGAGATTCCGTCGTACGTCACAGAGCGTCCCAACAGCGGTTT
GCATCTGCGGGTGCACTTGATGTGCCCGGCGCGGGCGGAGGAGAATTGTC
CGAGCCTGTCGTCGTTTGTCAAGCTGTATGCCTGTGAGGCTTCAGGGGGT
ACCGGTCCTTCCCATCGCCGCGTCCTGGATGGAGCTCCAGGATCAGAGGA
AGAAAATGGGGCCAGGGGAAGGCTTGCGCTAAGACCTGAGGGGTTCGCTC
CTGACGTGGGCAAGGCGCAGGACGTGGCGCCCCCACCGATTGACACCAGC
GGAGGTGATGGCAACGTCGGGCACGTCCGTGCGTCCTCCCTCCCGACCTC
CCCCTCCCCCTCTGCTTCCCGCCCTCCTTTCCCTACCGCCGTCGCCGCAA
CGCCGTCCTCTCCAACGAGCCTTCGTACCCCACCCAAGGGCACCTCTCCT
TTGAAAGCCACCCCGACAGGCCTCGGAGGCTCTCATGGAAAGGGCCAGGA
CGCTAGGGTCTGGGAAGGCTGTGCGGGGGAAGTGGTGGAGCTGGGTCGTC
TGGTGGCTCCGGCAGGACGGGAAATGCTGACGGTGGTGGAGGCATCGCCT
TTCTTGGCGGCCTTGCCCCTGAAAGGAGACTACCGGCGGGGGGGAAAGAG
CGAAGAATACTCGCCGCATCGGCCCGTGGTCAAGGTCTTTGTGCTCGGGG
CAGACGGGTACAATGTCAGCCTCTCCCTGCTTTTCACTGCGGCCAGTCCC
GGAGACCTGGTGCCTTTTCAAACCTTTCGGATCGACACGAGCGACCCGGG
AACGACGCAGACACGCCAAGGAGACAGCCAGTCAACGGCAGCTTCGAATT
CAAATTTCAAAATTGTGTCGTTACCCAAGGGCGTCCCTTCCTATTCGTTG
GTAGCCAGCATAACCGCCGAGGGGATTCCTCCCGGTAGTGACCTTCCCTC
GGCAGCACACACCTTCCAAGTCCAAGAACTGGCACCGAGCCTCACCTCTT
CTTCCCCCCCTCCCTCCCCCCTTACCTGGGACGTGCCCCTCCTCCTCCAA
AGCCAGCCTTTCGGGTGCTCGAACCTGACGCTGACGCGTGCGGGTGTCAT
CCCCAATCAGCTAGGGGACTGGTACTCCTCCCAGCCAGGGTTCTGCCCGG
GCTCTTCCGTGGCCTTGAAGCAGTTCGCAGTGACGCGGCCGACGGCGCCC
GAAGAAGGGGAGATCAAGGTGGTTTATCTCCAGGGGAGGGAGTCGCCAAG
GCAGGGTAGGGGCGATGGGGAGGCATTGTCCGCCTCCGGAGGGGAAGGAC
TGGTCGACTTGGAGGCCTACGTGGTCACGTACGCCTTCCTGCCCCCGACA
CCCCAAGTCTCTTCGGTGCACTTCGTCAACGTCAGCACCCCCTTCCCTCC
GTCCACGGACCCTCCGCTCCCGCCCAAAGCATCCTCCCCCACCTTGAACG
AGGCCAGCGTCAGCAGCCAGGCTGGTCGCACGACCCTGACCCTCCGCTTG
CCAGGGCCTTCGTTCGCCGACAGTCAGGACGCGCATATCCTCTTCCCGTC
CCCGACCGCGGACACCTCCCAGATCCGCATGCCCATTGACCTGTACCGAG
TCACCCTCTCCGAGAGGGTCTCGGGCGACACCTTCGTCTATACCTTTCCC
GTGGCCGCGCCGCCCGACCTGGGAGTGACCAGCGAGGGCGAGGTGCCCGT
GTCGGTAGCTCCTCCCAACAGCCAAGCGGTGCAAGTGGAGGTGGCAAACA
CCACGGCGGCCATACCCACCCTACCGACAGAGGTGGAAGGCGGCAAGGAC
GTTGAGGAAAGGGGGGGGGCGCGCGGCTTGCAAGGAGGCCGTCGTCGACT
CCCGGTAGGATCCCAAACGGAAGGACAAGGGGCATCCTCCGCCCCCCCTC
CCTCCCTCCCTCCCCCCCCTCCAATTGGTCCTGCGAAATCTCCAACCTCG
CACCGATTACTTGGTCAAAATCGCCCCCGTCTCTCCCGCGGGGCCGGGGC
GGGCGGCTGTCCTGACGGTGAACGTGCCTGGAAGCTCGACCTCTGCCCCT
TCCGCGGCCTTGCGAGACGGCAGCCCGGGCAAGGGACCGGGAGGCCAAGG
CGGGAAGGGAGATGGGCCGTCGCCAGGCACCACGATAGGCTTGGCCATGG
GCCTACTGGGGGTGGTGGCTTTGATAGGAGTGCTGGCCGTCGTTGTGTGG
AGGCGTGCTTCCCCAGGGCGCTTTGTCGGCATGGGAAGCTCAGGGGAAGA
GGAAGGGGAGGACAACAGTGGGGAAGGTTTGGGACAGGGGGGAGATCGAT
TGGGACCGAGGCACGGCCAAGGAAACAGGAACGAGGGAGAGGAATATCAC
GTGGGCAGTTTGCAACGGGAGGGAGGGATCGAGGGAAGGAGGGGGGGAGA
GAGGCCTTTTCCACCTCGATTGGACAGGCAAGGAAATCTGTGCCGGTCGA
GCAGTGGGCATGGGGAAGGGGATGGAGAGAGGAAGGGGGAAAGGGAGGGA
AGGAGGGAGGGAACAAAGGGGGAGGAAGAGGAAGAGCCCCCGACATTTGA

protein sequence of rna1794

>rna1794-protein ID=rna1794-protein|Name=rna1794|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MDLEDYLFRYDRGVFWLAQTSAASIPVFPFLQGWYFARGSRSLLSRVCWR
WLFSSSFLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLP
PPAPLYLLPQRGSSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGHTQRV
EAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFP
SLEEKVCWEEEKAKSGKGWIERYWEGRRRKFLGILV

mRNA from alignment at CM002458.1:150501..151717+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1794 ID=rna1794|Name=rna1794|organism=Nannochloropsis gaditana|type=mRNA|length=1217bp|location=Sequence derived from alignment at CM002458.1:150501..151717+ (Nannochloropsis gaditana)
CcctgtccccttcccttctacACGGGGGGGCGCGGGTCCTCCGACCTGTT
CTATTCCGAGCATTTGGAGGATATTCACGCCCTTCTAGAACGATCCAACG
CGGATTCGTACGTGGAAAGGATGGATCTCGAAGATTACCTCTTCCGATAC
GATCGAGGAGTGTTCTGGTTGGCCCAGGtaaatggagggaagagaaggag
ggaaggggggaaggaagaagtcaGGAGGTAGAAAGGAAAAttgagggggg
cggggatggtTACACACGAAGCGGAAGCCAGATCTCTGCACATGTAGACC
GAAGCCAATGTTGTATAAGAACTGTGGTGGTCAGAGCTTACAACCCGTTC
CTAAACGGGGCACCCACCCTTGGACGAtggctccctttccttcccctctt
tctgtcctccctccctccagacctccgctgcctccattcccgtcttccct
ttcctccaaggCTGGTATTTCGCGCGCGGatctcgctctctcctctcccg
ggtCTGTTGGCGTTGGCTtttttcatcctctttcctcttctccctcctgc
acgccGCCACGCCCGACCTACtggcctcccgcctcctcctcgttgctcct
tgcctccccgtcaaccaggcccccgccctcctcgcattCCTTCAcgccac
ccttcccctccctcccccggcccctctctacctccttccccagcgGGGAT
CCTCGGTGCGTCAGCCTTTTGCCTCCCATGGTCATATCCACACGCTATTT
TTGTCGGTGCATGTGTACGCCCGtttggggaaaggggaggcgcAGGGACA
CACGCAACGTGTCGAGGCCTGGGTAggcaaaaaagggggaagaacgGGTC
TGTGCACGATGAATTACTGGGACAAGTCCGTGTTTTGGAGCGGGTATCCC
CTGTACGATTGGCGGGAATACGTGTACCTCCGGCACAAATATGGCGCCGA
GGGtgttttcccttccctggaggagaaggtgtgttgggaagaagaaaaag
caaaaagcgGAAAAGGATGGATAGAGCGTTactgggaaggaaggcggagg
aaattCTTGGGCATCCTGGTCTGAGAGAAGATGAAGCATAGGAGAGAATA
GATAGGCTggtgagaagggggaagggtaAGAGGAATCGAACAAGAGTTTT
ATAAAGCAAGTAATGGCTACTAAAGCACGTGGGAGACATAAACGGTTGTA
AAGTGTTCTCAGTCAAA

Coding sequence (CDS) from alignment at CM002458.1:150501..151717+

>rna1794 ID=rna1794|Name=rna1794|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at CM002458.1:150501..151717+ (Nannochloropsis gaditana)
ATGGATCTCGAAGATTACCTCTTCCGATACGATCGAGGAGTGTTCTGGTT
GGCCCAGacctccgctgcctccattcccgtcttccctttcctccaaggCT
GGTATTTCGCGCGCGGatctcgctctctcctctcccgggtCTGTTGGCGT
TGGCTtttttcatcctctttcctcttctccctcctgcacgccGCCACGCC
CGACCTACtggcctcccgcctcctcctcgttgctccttgcctccccgtca
accaggcccccgccctcctcgcattCCTTCAcgccacccttcccctccct
cccccggcccctctctacctccttccccagcgGGGATCCTCGGTGCGTCA
GCCTTTTGCCTCCCATGGTCATATCCACACGCTATTTTTGTCGGTGCATG
TGTACGCCCGtttggggaaaggggaggcgcAGGGACACACGCAACGTGTC
GAGGCCTGGGTAggcaaaaaagggggaagaacgGGTCTGTGCACGATGAA
TTACTGGGACAAGTCCGTGTTTTGGAGCGGGTATCCCCTGTACGATTGGC
GGGAATACGTGTACCTCCGGCACAAATATGGCGCCGAGGGtgttttccct
tccctggaggagaaggtgtgttgggaagaagaaaaagcaaaaagcgGAAA
AGGATGGATAGAGCGTTactgggaaggaaggcggaggaaattCTTGGGCA
TCCTGGTCTGAATGGATCTCGAAGATTACCTCTTCCGATACGATCGAGGA
GTGTTCTGGTTGGCCCAGacctccgctgcctccattcccgtcttcccttt
cctccaaggCTGGTATTTCGCGCGCGGatctcgctctctcctctcccggg
tCTGTTGGCGTTGGCTtttttcatcctctttcctcttctccctcctgcac
gccGCCACGCCCGACCTACtggcctcccgcctcctcctcgttgctccttg
cctccccgtcaaccaggcccccgccctcctcgcattCCTTCAcgccaccc
ttcccctccctcccccggcccctctctacctccttccccagcgGGGATCC
TCGGTGCGTCAGCCTTTTGCCTCCCATGGTCATATCCACACGCTATTTTT
GTCGGTGCATGTGTACGCCCGtttggggaaaggggaggcgcAGGGACACA
CGCAACGTGTCGAGGCCTGGGTAggcaaaaaagggggaagaacgGGTCTG
TGCACGATGAATTACTGGGACAAGTCCGTGTTTTGGAGCGGGTATCCCCT
GTACGATTGGCGGGAATACGTGTACCTCCGGCACAAATATGGCGCCGAGG
Gtgttttcccttccctggaggagaaggtgtgttgggaagaagaaaaagca
aaaagcgGAAAAGGATGGATAGAGCGTTactgggaaggaaggcggaggaa
attCTTGGGCATCCTGGTCTGA

Synonyms

Publications