EWM28878.1, cds1790 (CDS) Nannochloropsis gaditana

Overview
NameEWM28878.1
Unique Namecds1790
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:150621..150677 +
Alignment locationCM002458.1:150921..151574 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28878.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100095g1.10170.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:150621..150677 +
CM002458.1supercontigCM002458.1:150921..151574 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28878.1 vs. NCBI_GenBank
Match: gi|585111310|gb|EWM28878.1| (hypothetical protein Naga_100095g1 [Nannochloropsis gaditana])

HSP 1 Score: 481.1 bits (1237), Expect = 9.895e-172
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MDLEDYLFRYDRGVFWLAQTSAASIPVFPFLQGWYFARGSRSLLSRVCWRWLFSSSFLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPPAPLYLLPQRGSSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGHTQRVEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEKVCWEEEKAKSGKGWIERYWEGRRRKFLGILV 236
            MDLEDYLFRYDRGVFWLAQTSAASIPVFPFLQGWYFARGSRSLLSRVCWRWLFSSSFLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPPAPLYLLPQRGSSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGHTQRVEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEKVCWEEEKAKSGKGWIERYWEGRRRKFLGILV
Sbjct:    1 MDLEDYLFRYDRGVFWLAQTSAASIPVFPFLQGWYFARGSRSLLSRVCWRWLFSSSFLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPPAPLYLLPQRGSSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGHTQRVEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEKVCWEEEKAKSGKGWIERYWEGRRRKFLGILV 236          
BLAST of EWM28878.1 vs. NCBI_GenBank
Match: gi|551648584|ref|XP_005827074.1| (hypothetical protein GUITHDRAFT_164774 [Guillardia theta CCMP2712] >gi|428171175|gb|EKX40094.1| hypothetical protein GUITHDRAFT_164774 [Guillardia theta CCMP2712])

HSP 1 Score: 122.479 bits (306), Expect = 2.301e-28
Identity = 74/211 (35.07%), Postives = 115/211 (54.50%), Query Frame = 0
Query:    4 EDYLFRYDRGVFWLAQ--TSAASIPVFPFLQGWYFARGSRSLLSRVCWRWLFSSSFLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPPAPLYLLPQRGSSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGHTQRVEAWVGKKGGRTGLCTMNYWDKSVFWS-----GYPLYDWREYVYLRHKYGAEGVFPSLEEKVC 207
            EDYLFRYD G FW+A+  T  A       +    F   S  L  R+   W+FS+  LFSLL  A+   +AS+++++   +P+  A  L+  + + +P+    P++L P + SS  Q  + HGH+ +L ++V +Y R+  G    +T+ +EA + K GGR  L + N++ ++ FW         +    EY  LR KY AEGVFP+L  KVC
Sbjct:  387 EDYLFRYDYGAFWMARPMTWGAKSTRLNLVTSTLFLMTSPWL--RMFTGWMFSTRILFSLLRLASRSAIASKMIILDAYMPIRSAATLVQEVRSKVPIS--TPIWLCPVKPSSAAQLLSPHGHVKSLVVNVGIYGRVCDGRGSFYTKFLEAQIAKLGGRKMLYSQNFYSENEFWGREAPWKKTMPSESEYNQLRKKYAAEGVFPNLFVKVC 593          
BLAST of EWM28878.1 vs. NCBI_GenBank
Match: gi|1084436859|gb|OGN04071.1| (hypothetical protein A2659_02385 [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_44_24] >gi|1084449928|gb|OGN16544.1| hypothetical protein A3B99_05015 [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_02_FULL_44_12b] >gi|1084459851|gb|OGN26084.1| hypothetical protein A2925_00470 [Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_44_22])

HSP 1 Score: 70.8626 bits (172), Expect = 1.310e-10
Identity = 63/211 (29.86%), Postives = 96/211 (45.50%), Query Frame = 0
Query:    3 LEDYLFRYDRGVFWLAQTSAA--SIPVFPFLQGWYFARGSRSLLSRVCWRWLFSSSFLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPPAPLYLLPQRGSSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGHTQRVEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEKVCWEEE 211
            ++DYLFRYDRGVFWL + + +   IP         F R +R LL R         S   SL+  AT    + +  +   CLP       L F+   L +    PL+L+P R +      + +  +  L ++  V+ ++ KG+     ++VE  + +  GR  L    Y+ +  FW    +YD   Y  LR KY A  VFP L +K    E+
Sbjct:  259 IKDYLFRYDRGVFWLGRQALSFFKIP---------FTRLTRFLLDRAL------KSRTLSLVGQATS--TSQKYFVQDLCLPKENFLNFLQFVDEELHI---YPLWLVPLRPAGSLDKLSPNYILTDLVINAGVWGKI-KGDYFNVNRKVEGKLRELKGRKVLYAHAYYPRDEFWK---IYDHSWYSQLREKYFASSVFPDLYDKTHVSEK 445          
BLAST of EWM28878.1 vs. NCBI_GenBank
Match: gi|517778238|ref|WP_018948446.1| (FAD binding domain-containing protein [Thioalkalivibrio sp. ALMg11])

HSP 1 Score: 67.3958 bits (163), Expect = 1.998e-9
Identity = 62/210 (29.52%), Postives = 98/210 (46.67%), Query Frame = 0
Query:    1 MDLEDYLFRYDRGVFWLAQTSAASIPVFPFLQGWYFARGSRSLLSRVCWRWLFSSS--FLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPP--APLYLLPQRGSSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGH-TQRVEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEK 205
            + + DYL+R+D   FW ++   A +     L G       R  LS V ++ +  +S  +  SLLHA  P    S  ++    +P+  A A LA   A L + P    P +++P+ G S+ +      +I+  F  +     +   E  G+   RVEA V K GG+  L + + +D++ FW     YD   Y  L+H+   EG FP L EK
Sbjct:  250 LSIHDYLWRWDTDWFWCSRNVGAHLKPVRLLLG-------RKRLSSVTYQKIMRASRRWPLSLLHAVRP---RSEAVIQDVDIPIVNAAAFLADFEAELGIRPVWICP-FVVPEAGFSLFELRPDTAYINFGFWDI-----VRSSEPDGYYNARVEALVAKHGGKKSLYSRSTYDEATFWQN---YDRPAYEALKHECDPEGRFPGLYEK 440          
BLAST of EWM28878.1 vs. NCBI_GenBank
Match: gi|1041760734|gb|OBW65689.1| (hypothetical protein AUREO_042490 [Aureobasidium pullulans])

HSP 1 Score: 66.2402 bits (160), Expect = 4.571e-9
Identity = 63/224 (28.12%), Postives = 104/224 (46.43%), Query Frame = 0
Query:    3 LEDYLFRYDRGVFWLAQTSAASIPVFPFLQGWYFARGSRSLLSRVCWRWLFSSSFLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPPAPLYLLPQRGSSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGHTQR---VEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEKVC-WEEEKAKSGK-GWIE 221
            L DYLFRYDRG FW+ +  A +  + PF           + ++R        +S ++  LHA+       + ++    +P   A  +  F++A        PL+L P +  + +  F  HG    L ++V V+   G   A+   +R   +E+ V + GGR  L    ++ +S FW    +YD + Y+ LR KY AE   PS  +K C      +++G+ GW E
Sbjct:  188 LADYLFRYDRGAFWMGK-YAFNYFMVPF-----------NRITRWALDDFMQTSTMYHALHASGH---MQQYIIQDLAIP---AANVKDFINAVDQNFDFYPLWLCPMKPWTQQSSFHPHGIDTNLLINVGVWGPNGASTAEEGIERNRKLESLVKQHGGRKWLYAQAFYTESEFWD---IYDEKSYLDLRKKYRAE-YLPSAFDKACAIGNGTSQTGQPGWTE 389          
BLAST of EWM28878.1 vs. NCBI_GenBank
Match: gi|662525626|gb|KEQ83009.1| (FAD-binding domain-containing protein [Aureobasidium pullulans EXF-150])

HSP 1 Score: 64.6994 bits (156), Expect = 1.985e-8
Identity = 60/224 (26.79%), Postives = 99/224 (44.20%), Query Frame = 0
Query:    3 LEDYLFRYDRGVFWLAQTSAASIPVFPFLQGWYFARGSRSLLSRVCWRWLFSSSFLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPPAPLYLLPQRGSSVRQPFASHGHIHTLFLSVHVYARLGKG---EAQGHTQRVEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEKVC-WEEEKAKSGK-GWIE 221
            L DYLFRYDRG FW+ +  A +  + PF           + ++R        +S ++  LHA+       + ++    +P       +  +  T       PL+L P +  + +  F  HG    L ++V V+   G     E     +++E+ V + GGR  L    ++ +S FW    +YD + Y+ LR KY AE   PS   K C      +++G+ GW E
Sbjct:  259 LADYLFRYDRGAFWMGK-YAFNYFMVPF-----------NRITRWALDDFMQTSTMYHALHASGH---MQQYIIQDLAIPAANVKDFINAVDQTFDF---YPLWLCPMKPWTQQSSFHPHGIDTNLLINVGVWGPNGASTPEEGIERNRKLESLVKQHGGRKWLYAQAFYTESEFWD---IYDEKSYLDLRKKYRAE-YLPSAFNKACAIGNGTSQTGQPGWTE 460          
BLAST of EWM28878.1 vs. NCBI_GenBank
Match: gi|1028903474|gb|OAL05723.1| (FAD-binding domain-containing protein [Stagonospora sp. SRC1lsM3a])

HSP 1 Score: 64.3142 bits (155), Expect = 2.276e-8
Identity = 68/222 (30.63%), Postives = 102/222 (45.95%), Query Frame = 0
Query:    3 LEDYLFRYDRGVFWLAQTSAASIPVFPFLQGW---YFARGSRSLLSRVCWRWLFSSSFLFSLLH--AATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPPAPLYLLPQRGS---SVRQPFASHGHIHTLFLSVHV---------YARLGKGEAQGHTQR-VEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEKV 206
            + D+LFRYDRGVFW+A              GW    + R +R  L R+ WR    + F + ++H    TP ++          +P + A  +L++LH    +    PL+L P +     S+     S      + +++ V         + R G  EA   T R +EA V   GG   L  +NY+++  FW    +YD R Y  LR K+ AEG+ PSL EKV
Sbjct:  265 IADFLFRYDRGVFWMAA------------HGWAPLLWNRLTRFFLDRM-WR----TRFQYRVVHLIGGTPHIIQDL------AIPQSNAEDVLSYLHEEYKI---YPLWLCPIKYDPLVSMHTALTSPDPPPEMLVNIGVWGSPNYGADFLRPGTYEAFVRTNRAIEAKVTDAGGLKWLYAVNYYEEDEFWK---VYDKRRYEELRRKWSAEGL-PSLWEKV 456          
BLAST of EWM28878.1 vs. NCBI_GenBank
Match: gi|389638644|ref|XP_003716955.1| (FAD binding domain-containing protein [Magnaporthe oryzae 70-15] >gi|351642774|gb|EHA50636.1| FAD binding domain-containing protein [Magnaporthe oryzae 70-15])

HSP 1 Score: 64.3142 bits (155), Expect = 2.646e-8
Identity = 69/236 (29.24%), Postives = 103/236 (43.64%), Query Frame = 0
Query:    3 LEDYLFRYDRGVFWLAQTSAASIPVFPF--LQGWYFARGSRSLLSRVCWRWLFSSSFLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPPAPLYLLPQRG-------SSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGHTQRVEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEKVCWEEEKAKSG-----KGWIERYW 224
            L +YLFRYDRG FW+   +    P  PF  L  W+       + +R+ +R L S++  F  L     DLL          LP + A A + +    L +    PL+L P R         S  QP  S      L + +         E     +R+E  +G+ GGR  L +  Y+ +  FWS   LYD + Y  LR +YGA  + PS+ +K+  + + +  G      GW  R+W
Sbjct:  268 LPEYLFRYDRGGFWVGLEAFRYFPFVPFNRLTRWFL---DDFMHTRMLYRALQSTNRSFGFL---VQDLL----------LPYSTAEAFIDYSVEELDV---WPLWLCPLRAMRGPSFHPSTTQPGPSADPKPMLNIGLWGRGAQDLDEFVAQNRRLEERLGELGGRKVLYSHAYYTEGEFWS---LYDRKWYEELRERYGAMDL-PSVYDKIRIDAKTSSGGHRPGESGWWARFW 480          
BLAST of EWM28878.1 vs. NCBI_GenBank
Match: gi|440474188|gb|ELQ42945.1| (FAD binding domain-containing protein [Magnaporthe oryzae Y34] >gi|440484977|gb|ELQ64977.1| FAD binding domain-containing protein [Magnaporthe oryzae P131])

HSP 1 Score: 64.3142 bits (155), Expect = 2.744e-8
Identity = 69/236 (29.24%), Postives = 103/236 (43.64%), Query Frame = 0
Query:    3 LEDYLFRYDRGVFWLAQTSAASIPVFPF--LQGWYFARGSRSLLSRVCWRWLFSSSFLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPPAPLYLLPQRG-------SSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGHTQRVEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEKVCWEEEKAKSG-----KGWIERYW 224
            L +YLFRYDRG FW+   +    P  PF  L  W+       + +R+ +R L S++  F  L     DLL          LP + A A + +    L +    PL+L P R         S  QP  S      L + +         E     +R+E  +G+ GGR  L +  Y+ +  FWS   LYD + Y  LR +YGA  + PS+ +K+  + + +  G      GW  R+W
Sbjct:  267 LPEYLFRYDRGGFWVGLEAFRYFPFVPFNRLTRWFL---DDFMHTRMLYRALQSTNRSFGFL---VQDLL----------LPYSTAEAFIDYSVEELDV---WPLWLCPLRAMRGPSFHPSTTQPGPSADPKPMLNIGLWGRGAQDLDEFVAQNRRLEERLGELGGRKVLYSHAYYTEGEFWS---LYDRKWYEELRERYGAMDL-PSVYDKIRIDAKTSSGGHRPGESGWWARFW 479          
BLAST of EWM28878.1 vs. NCBI_GenBank
Match: gi|516567487|ref|WP_017942553.1| (MULTISPECIES: FAD binding domain-containing protein [Thioalkalivibrio])

HSP 1 Score: 63.5438 bits (153), Expect = 4.560e-8
Identity = 58/210 (27.62%), Postives = 96/210 (45.71%), Query Frame = 0
Query:    1 MDLEDYLFRYDRGVFWLAQTSAASIPVFPFLQGWYFARGSRSLLSRVCWRWLFSSS--FLFSLLHAATPDLLASRLLLVAPCLPVNQAPALLAFLHATLPLPPP--APLYLLPQRGSSVRQPFASHGHIHTLFLSVHVYARLGKGEAQGH-TQRVEAWVGKKGGRTGLCTMNYWDKSVFWSGYPLYDWREYVYLRHKYGAEGVFPSLEEK 205
            + + DYL+R+D   FW ++   A +     L G       R  LS V ++ +  +S  +  SLLHA  P    S  ++    +P+  A A LA   A + + P    P +++P+ G S+ Q         T +++   +  +   E  G+   RVE  V K GG+  L + + +D++ FW     YD   Y  L+ +   +G FP L EK
Sbjct:  250 LSIHDYLWRWDTDWFWCSRNVGAHLKPVRLLLG-------RKRLSSVTYQKIMRASRRWPLSLLHAVRP---RSEAVIQDVDIPIGNAAAFLADFEAEIGIRPVWICP-FVVPEAGFSLFQL-----RTDTPYINFGFWDMVRSSEPDGYYNARVEELVAKHGGKKSLYSRSTYDEATFWQN---YDREAYKALKRECDPDGRFPGLYEK 440          
The following BLAST results are available for this feature:
BLAST of EWM28878.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111310|gb|EWM28878.1|9.895e-172100.00hypothetical protein Naga_100095g1 [Nannochloropsi... [more]
gi|551648584|ref|XP_005827074.1|2.301e-2835.07hypothetical protein GUITHDRAFT_164774 [Guillardia... [more]
gi|1084436859|gb|OGN04071.1|1.310e-1029.86hypothetical protein A2659_02385 [Candidatus Yanof... [more]
gi|517778238|ref|WP_018948446.1|1.998e-929.52FAD binding domain-containing protein [Thioalkaliv... [more]
gi|1041760734|gb|OBW65689.1|4.571e-928.13hypothetical protein AUREO_042490 [Aureobasidium p... [more]
gi|662525626|gb|KEQ83009.1|1.985e-826.79FAD-binding domain-containing protein [Aureobasidi... [more]
gi|1028903474|gb|OAL05723.1|2.276e-830.63FAD-binding domain-containing protein [Stagonospor... [more]
gi|389638644|ref|XP_003716955.1|2.646e-829.24FAD binding domain-containing protein [Magnaporthe... [more]
gi|440474188|gb|ELQ42945.1|2.744e-829.24FAD binding domain-containing protein [Magnaporthe... [more]
gi|516567487|ref|WP_017942553.1|4.560e-827.62MULTISPECIES: FAD binding domain-containing protei... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1794rna1794Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications