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Properties
| Property Name | Value |
|---|
| Product | exosome complex exonuclease rrp44 |
| Orig transcript id | gnl|cribi|Naga_100494g5.8968.mrna |
| Orig protein id | gnl|cribi|Naga_100494g5.8968 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:127496..128960 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1790 ID=rna1790|Name=rna1790|organism=Nannochloropsis gaditana|type=mRNA|length=1953bp
AAACGTGACTTTCAGTTTCCTTCTCGGCGGGCGGAACACATAAATCAGCG
ACGCTGCCAACTTCCTTGCGGCGGCTACCATGGCACACGACCCACAGCCC
AATTCGTTCACTCCAAAGGCACAACAGGACGCAATGGATGGAGATACTGT
GGTTCGCTTTAATGTAGGCGGGGAGGTGTTCATGACGACCAGGTGAGTTC
AGTGACACCACGGCTGACATCACTCATGTTCAAGGATCAGCGAGGCCTGG
CACATGCCATAGGATGTCGTCCTCACAAGTGTGATATTTGGCGCATATTC
GAAGAAATGCTTATTTCAACGTCATTTCTCTTGCATAGTCTCCAAAAGTG
CATGAAAAGCAATCGCCTCCCGTATGCTTGCGTTCCCTGCTTTTCTCTCT
TGCCATTGTCCTCTGACTGTGCACCCGTGCAGTATCGAATATTTTTCCTC
CCTTGCGTTTATGTCTTGATCAGGCTCTTACGACCTTAAATCGCGGGATC
AGGTTGGGAGAGAGTCAGGGTTTGAAATCATTGCACTCGCCCCTCCCCTT
CTACCAGTGAAAGCGAGCCACATCCTACGTTCCATCTCGACCCTTCGATT
CTGCTGCCTTTGACATCGTTGCGAATGAACTCGATAGAGCCATCGTGCCG
TGTAGACGTGCCATCTAAATAATAGATGCTTTATTGCCGCTTAATCCATC
CTCAATCGTCCCCCCTTCTCCCTCCTCCACAGGGCTACCTTCACACGCAC
GCTTCCCCCCTCCTCCGTCTCCGTCTTCTTTCGTCGCCTTTGTTCCGGTT
CAGAGGACGAACGGGGGCTCCCCTTTTTAGATGCAGACCCTGCCTGCATG
CGCCACCTCCTCACCTCCCTCCGCGCCCGTCGTTACCTCCCTCCATCCAC
CCGCCTGGGGGCTTCCGCCTCTTCTTTGCCATACTCCCCCGTCCCGCACC
TGCTCCCCCTTCCTCTCCCTTCCTCTCTCTCCCCCACCGCCTGGTCCGCC
TTCCTGGCTCACACAGGTCTCGACGCTCTCCTCCCTCCCACCCACACCGC
GGCTTGCCCCCGCGTGGGGCCTCCCCGTTTCGACGTGGCCTCCTCGGGTG
TATGTTGTGCCCCGGGGGGCCAGACGGCCTTCATGGTGTACTGCCCTCAG
CTCTACGGCTTCGCCGCCTGCTCCTCTCCGCTCCCAGCCGCGGCCGGTGC
GCACTTTTCCTTGCGATGATTTTCTGCCTTTCGTGTTCCCTCCCTCCCTC
CCTTCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCTTTCCTTTTCTCGC
CCCGTCCTTTCCTTTGTTTTAGACGGTCGCTCCCGATGCTTGCTTAACAT
GCCGCGTCCTGATGATACGATTCCGCACCAACCTTGTCCCCCCCCTTCCC
TCTCTCTGATCGTTGCCTCCCCCCCCCCGGCCACCTCAGCCTTGCGTCTC
CGGGTGACCCTGGCCTCTCCCAACCCCTCTCTCGCCGTGGCGATCGGCCT
CATCGACAGCCTAGGGCGGGCTGCAGCACGGTCGTACCCTACCCTTGGCA
TCTCCAGTACCCCCGCGGGAGGCTTCGTTCACTGGGCACCTCCTTGTGCG
CTTTCCGCCCACGCACCGGCGTCAATGGCGAGTCCTGGTGGGCAGGAAGG
TGGAGAGGGAGGGGGAGGAGGGGGCGGCGCAGCGGACGGGGGCAGAGAGG
GAAGAATGCAATGGCAGGGGCTCATTGATGGCAAAAGGGTGGTAGGAGGG
ACGACGGGAGGGGCGGGAGGGGAAAGGGAAGGCGGGAGGGAGACGTTGTC
ATCGGAGAGCCGGCATACCCCGCCTTCCACGGGGGAGGAGGGGGAGGAGG
AGGAGGGTCGCTGGGGCGGGGTGCAAGACAAGGACGAGGTCTTTTTCCGG
TTGAATGAAGGGGAGGGGCGTTTGTCCATAGCGACTTGGCGGGAGGGCGG
GCG back to topprotein sequence of rna1790 >rna1790-protein ID=rna1790-protein|Name=rna1790|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQL
MEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASE
AVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY
R back to topmRNA from alignment at CM002458.1:127496..128960+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1790 ID=rna1790|Name=rna1790|organism=Nannochloropsis gaditana|type=mRNA|length=1465bp|location=Sequence derived from alignment at CM002458.1:127496..128960+ (Nannochloropsis gaditana)
CCTCAAAAACACTTAATAAGATGCCTGCGGTCTGGTAGCCCTTCAAGGAG
TTTTTGTTTTGTAGCATGCGTGACTTTGTCCCTTAGAGTAATAGAGTATC
CGTACAGGCAACAGGGACAAGCTTTCTCCCATATCATCATCAAAACCGTG
ACACCTATCCTTCCCTGATCTACAGGACTTACCCCCCTGAATGCGACTGA
ATGCCCTCCTACTATTCTTTCGACTTCAGCCTGCCGTCTTTTCTTTGCTC
GTCGGAGTTCAGGCGTCTGCACTTTAGTGTTCAGggttcctcctcgccca
ttTCGACCTCCTCCGAGAGCTGGGAGCTCCGTCAAAAGCAAGAGCGACAG
CGTCGACAGGAGTGGCAGGAGCGGGAAGAACGAGCCCTTCGGAAAGataa
agaggaaggggacgacgGCAGCAAGAcctttttatttttaaaAGGTCGGA
ATAAAGAGTAAGGCGAACAGAACCAGACGCAGTGAGCAACTACTTCGACT
TCTAGCGACGTCGAGAAAACGAATTAAAAACATGATCCGATCAAAGGCAT
TTTTCAAACGAACAAGACGGGGCAAGGTATATTAAAGCATCATCATATTT
GGGTCTGTTCGTGAAACTTATGGGTTTTTTTGAAAACTCTGATGCCTCTT
AAttattttctttccccccatcttattctctccctctgtcgACTCCTCGA
AAGGTCATGCGCATTCTGGAGGAACACTATCTACGTGATGACATCGGTCT
GGGCACGCTTCATGGTTCCGAATGCTCTGCTTTGACGCCCGAAGAGCTCG
TTCAGCTCatggagggacgggtggagggagggctgaaggaaggggaagag
ggagggcatgagggaggggtcaagaaaaagacgccTACCCTAACCATTCT
GGACACGAATGTGGCATTGGAGCAGATTGATTTCTTGGAAAACGCGGAGG
TAGGTCAGccaggtggggaggatgatgaggaaggatggggcccgcaaagg
cgagggagaaagagacagaaCCTCGCACGATGGAAATTCATGCATGATGG
GCACCTACAGGCATCAGAAGCAGTCCTAGGGGTCGTAGTTCTTCTACAga
cggtgctggaggaagTCAAGGGGAACAGCCTGTCCGTGTATCGGtgagcc
ctccttccctccctctttcccgtcctccactcctccctgccttccatccc
tctctttcctccaagcTTGTGCTGTCTATCGCTCCGCTTCGCGCACGATG
TCAATTCAAGCTTTTCTGCGTATCgctggaagaagaaaaagttatgtcgc
tctttctttccctccttctctcggctcgccctgccccttctttccccgct
GCGGTCAAGGCGCCTTCACAAACTCCTCCTTGATGACAGTCGGGCCTATA
TTTTTTTTGCCAATGAGCACGCGGCCGAGGCCTACAGgtaaggaagggga
aggaaggggacgtgg back to topCoding sequence (CDS) from alignment at CM002458.1:127496..128960+ >rna1790 ID=rna1790|Name=rna1790|organism=Nannochloropsis gaditana|type=CDS|length=1824bp|location=Sequence derived from alignment at CM002458.1:127496..128960+ (Nannochloropsis gaditana)
ATGATCCGATCAAAGGCATTTTTCAAACGAACAAGACGGGGCAAGGTCAT
GCGCATTCTGGAGGAACACTATCTACGTGATGACATCGGTCTGGGCACGC
TTCATGGTTCCGAATGCTCTGCTTTGACGCCCGAAGAGCTCGTTCAGCTC
atggagggacgggtggagggagggctgaaggaaggggaagagggagggca
tgagggaggggtcaagaaaaagacgccTACCCTAACCATTCTGGACACGA
ATGTGGCATTGGAGCAGATTGATTTCTTGGAAAACGCGGAGGCATCAGAA
GCAGTCCTAGGGGTCGTAGTTCTTCTACAgacggtgctggaggaagTCAA
GGGGAACAGCCTGTCCGTGTATCGGCGCCTTCACAAACTCCTCCTTGATG
ACAGTCGGGCCTATATTTTTTTTGCCAATGAGCACGCGGCCGAGGCCTAC
AGgtaaATGATCCGATCAAAGGCATTTTTCAAACGAACAAGACGGGGCAA
GGTCATGCGCATTCTGGAGGAACACTATCTACGTGATGACATCGGTCTGG
GCACGCTTCATGGTTCCGAATGCTCTGCTTTGACGCCCGAAGAGCTCGTT
CAGCTCatggagggacgggtggagggagggctgaaggaaggggaagaggg
agggcatgagggaggggtcaagaaaaagacgccTACCCTAACCATTCTGG
ACACGAATGTGGCATTGGAGCAGATTGATTTCTTGGAAAACGCGGAGGCA
TCAGAAGCAGTCCTAGGGGTCGTAGTTCTTCTACAgacggtgctggagga
agTCAAGGGGAACAGCCTGTCCGTGTATCGGCGCCTTCACAAACTCCTCC
TTGATGACAGTCGGGCCTATATTTTTTTTGCCAATGAGCACGCGGCCGAG
GCCTACAGgtaaATGATCCGATCAAAGGCATTTTTCAAACGAACAAGACG
GGGCAAGGTCATGCGCATTCTGGAGGAACACTATCTACGTGATGACATCG
GTCTGGGCACGCTTCATGGTTCCGAATGCTCTGCTTTGACGCCCGAAGAG
CTCGTTCAGCTCatggagggacgggtggagggagggctgaaggaagggga
agagggagggcatgagggaggggtcaagaaaaagacgccTACCCTAACCA
TTCTGGACACGAATGTGGCATTGGAGCAGATTGATTTCTTGGAAAACGCG
GAGGCATCAGAAGCAGTCCTAGGGGTCGTAGTTCTTCTACAgacggtgct
ggaggaagTCAAGGGGAACAGCCTGTCCGTGTATCGGCGCCTTCACAAAC
TCCTCCTTGATGACAGTCGGGCCTATATTTTTTTTGCCAATGAGCACGCG
GCCGAGGCCTACAGgtaaATGATCCGATCAAAGGCATTTTTCAAACGAAC
AAGACGGGGCAAGGTCATGCGCATTCTGGAGGAACACTATCTACGTGATG
ACATCGGTCTGGGCACGCTTCATGGTTCCGAATGCTCTGCTTTGACGCCC
GAAGAGCTCGTTCAGCTCatggagggacgggtggagggagggctgaagga
aggggaagagggagggcatgagggaggggtcaagaaaaagacgccTACCC
TAACCATTCTGGACACGAATGTGGCATTGGAGCAGATTGATTTCTTGGAA
AACGCGGAGGCATCAGAAGCAGTCCTAGGGGTCGTAGTTCTTCTACAgac
ggtgctggaggaagTCAAGGGGAACAGCCTGTCCGTGTATCGGCGCCTTC
ACAAACTCCTCCTTGATGACAGTCGGGCCTATATTTTTTTTGCCAATGAG
CACGCGGCCGAGGCCTACAGgtaa back to top
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