EWM28887.1, cds1786 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|585111322|gb|EWM28887.1| (exosome complex exonuclease rrp44 [Nannochloropsis gaditana]) HSP 1 Score: 303.908 bits (777), Expect = 2.050e-104 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query: 1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAYR 151
MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAYR
Sbjct: 1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAYR 151
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|299115727|emb|CBN74292.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 127.872 bits (320), Expect = 2.492e-31 Identity = 67/150 (44.67%), Postives = 94/150 (62.67%), Query Frame = 0
Query: 1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
M R++AFFK+TR+GK++R++ +HYLRDDIG G+L G S + LVQL E +K+ +LDTNV L Q+D LEN + L VV+LQTV++E + N+LS++RRL +LL DDSR ++FFANEH E +
Sbjct: 1 MHRNRAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSN---DNLVQL---------------AQESVMKR----FLVLDTNVVLNQMDLLENPSPA---LSCVVVLQTVMQEARHNNLSLFRRLKQLLKDDSRVFVFFANEHHCETF 125
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|642030749|emb|CDQ94529.1| (unnamed protein product [Oncorhynchus mykiss]) HSP 1 Score: 99.3673 bits (246), Expect = 1.536e-22 Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 0
Query: 1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
M++SK F K+TR G +M+I+ EHYLRDDI G+ +EC EE V + +E L P + DTN+ L QID LE + ++ V++LQTVL+EV+ S +Y+RL +L D + + F NEH E Y
Sbjct: 1 MLKSKTFVKKTRSGGIMKIVREHYLRDDIWCGSEVCTECKQ---EETVLQKDACIESNLCSF-------------PHYLLPDTNIVLSQIDILE-----DPLIKNVIILQTVLQEVRHRSAPIYKRLKDILHDKEKHFYTFTNEHHRETY 129
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|642030750|emb|CDQ94530.1| (unnamed protein product [Oncorhynchus mykiss]) HSP 1 Score: 98.9821 bits (245), Expect = 3.106e-22 Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 0
Query: 1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
M++SK F K+TR G +M+I+ EHYLRDDI G+ +EC EE V + +E L P + DTN+ L QID LE + ++ V++LQTVL+EV+ S +Y+RL +L D + + F NEH E Y
Sbjct: 1 MLKSKTFVKKTRSGGIMKIVREHYLRDDIWCGSEVCTECKQ---EETVLQKDACIESNLCSF-------------PHYLLPDTNIVLSQIDILE-----DPLIKNVIILQTVLQEVRHRSAPIYKRLKDILHDKEKHFYTFTNEHHRETY 129
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|209732782|gb|ACI67260.1| (Exosome complex exonuclease RRP44 [Salmo salar]) HSP 1 Score: 97.8265 bits (242), Expect = 1.926e-21 Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 0
Query: 1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
M++SK F K+TR G +M+I+ EHYLRDDI G+ +EC EE V + +E L P + DTNV L QID LE + ++ V++LQTVL+EV+ S +Y+RL +L D + + F NEH E Y
Sbjct: 1 MLKSKTFVKKTRSGGIMKIVREHYLRDDIWCGSEVCTECKQ---EESVLQKDACIESNLCS-------------FPHYLLPDTNVVLSQIDILE-----DPLIKNVIILQTVLQEVRHRSAPIYKRLKDILHDKEKHFYTFTNEHHRETY 129
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|507534042|ref|XP_004651077.1| (PREDICTED: exosome complex exonuclease RRP44 [Jaculus jaculus]) HSP 1 Score: 98.9821 bits (245), Expect = 2.856e-21 Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = 0
Query: 1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
M++SK F K+TR G VM+I+ EHYLRDDIG G + C G GG + H+ P + DTNV L QID LE + V+ V++LQTVL+EV+ S +Y+R+ + + + + F NEH E Y
Sbjct: 1 MLKSKTFLKKTRAGGVMKIVREHYLRDDIGCGAPGCAAC-------------GGAHGGPALEPQPQHQASSLWPRPHYLLPDTNVLLHQIDVLE-----DPVIRNVIVLQTVLQEVRNRSAPIYKRIRDVTNNQEKHFYTFTNEHHKETY 132
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|1176309709|ref|XP_020657498.1| (exosome complex exonuclease RRP44 [Pogona vitticeps]) HSP 1 Score: 98.5969 bits (244), Expect = 3.784e-21 Identity = 58/150 (38.67%), Postives = 79/150 (52.67%), Query Frame = 0
Query: 1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
M+ S+ F KRTR G VM+++ EHYLRDDI G C V+ E G L E + G + P +LDTNV L QID LE + V+ VV+LQTVL+EV+ S VY+R+ ++ + + + F NEH E Y
Sbjct: 1 MLTSRTFLKRTRAGAVMKVVREHYLRDDISCGAAACETCGE------VRGGEDGPSGPLLEAQPSGAASSLCPD-PHYLLLDTNVLLHQIDILE-----DPVIRNVVILQTVLQEVRKRSAPVYKRIRDVIANPEKHFYSFTNEHHKETY 138
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|817057588|ref|XP_012269707.1| (exosome complex exonuclease RRP44 [Athalia rosae]) HSP 1 Score: 98.5969 bits (244), Expect = 4.298e-21 Identity = 53/150 (35.33%), Postives = 82/150 (54.67%), Query Frame = 0
Query: 1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
M+ +K FF++T+RG +++I+ EHYLRDDI G+ S+C + + ++ +E P +LDTN+ L+QID LE E L VV+LQTVLEE++ S +VY++L ++ D R + F NEH + Y
Sbjct: 1 MLTTKTFFRKTKRGNILKIVREHYLRDDIWCGSNLCSKCKHKSKDLIL--------------DEDPDSKSSLYPEPHYLVLDTNIVLDQIDVLE-----EDALCNVVILQTVLEEIRHRSSNVYKKLRDIIGDPKRKFYVFVNEHHKDTY 131
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|545704350|ref|XP_005704498.1| (exoribonuclease R [Galdieria sulphuraria] >gi|452820942|gb|EME27978.1| exoribonuclease R [Galdieria sulphuraria]) HSP 1 Score: 98.2117 bits (243), Expect = 5.386e-21 Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 0
Query: 2 IRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
+R K+F KRTR+G + ++ +EHYLRDDI + + C P + V+L+ E L I DTN+ L Q+D LE+ V+ V+LLQTVL+E + ++SVY RL KLL D SR+++ F+NEH E +
Sbjct: 73 VRGKSFIKRTRKGNIAKVTKEHYLRDDIPCLSPLCTTC----PHKEVKLLSNSAEFYL--------------------IPDTNIVLHQLDLLESD-----VVTDVILLQTVLQETRNRNMSVYERLKKLLNDQSRSFVSFSNEHHKETF 192
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|671688627|emb|CDS02945.1| (hypothetical protein LRAMOSA00347 [Lichtheimia ramosa]) HSP 1 Score: 97.8265 bits (242), Expect = 7.599e-21 Identity = 56/150 (37.33%), Postives = 85/150 (56.67%), Query Frame = 0
Query: 1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
M+RSKAF KRTR+G V+++++EHYLRDDI T + C+A + L L + + L + P I DTNV + Q+D +E+ + V++LQTV EE++ SL+VY RL+ +L D +R + FANEH + +
Sbjct: 1 MLRSKAFVKRTRKGNVVKVVKEHYLRDDI---TCSSAACNACEHQSLPILSKNPRKSELTD-------------RPHYIIPDTNVFMNQLDIMEHPSIKD-----VIVLQTVREELRHLSLAVYNRLNAILADKNRRFYLFANEHHRDTF 129 The following BLAST results are available for this feature:
BLAST of EWM28887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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