EWM28887.1, cds1786 (CDS) Nannochloropsis gaditana

Overview
NameEWM28887.1
Unique Namecds1786
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:128027..128071 +
Alignment locationCM002458.1:128199..128444 +
Alignment locationCM002458.1:128556..128638 +
Alignment locationCM002458.1:128855..128936 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28887.1
Productexosome complex exonuclease rrp44
Orig transcript idgnl|cribi|Naga_100494g5.8968.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:128027..128071 +
CM002458.1supercontigCM002458.1:128199..128444 +
CM002458.1supercontigCM002458.1:128556..128638 +
CM002458.1supercontigCM002458.1:128855..128936 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|585111322|gb|EWM28887.1| (exosome complex exonuclease rrp44 [Nannochloropsis gaditana])

HSP 1 Score: 303.908 bits (777), Expect = 2.050e-104
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAYR 151
            MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAYR
Sbjct:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAYR 151          
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|299115727|emb|CBN74292.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 127.872 bits (320), Expect = 2.492e-31
Identity = 67/150 (44.67%), Postives = 94/150 (62.67%), Query Frame = 0
Query:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
            M R++AFFK+TR+GK++R++ +HYLRDDIG G+L G   S    + LVQL                 E  +K+      +LDTNV L Q+D LEN   +   L  VV+LQTV++E + N+LS++RRL +LL DDSR ++FFANEH  E +
Sbjct:    1 MHRNRAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSN---DNLVQL---------------AQESVMKR----FLVLDTNVVLNQMDLLENPSPA---LSCVVVLQTVMQEARHNNLSLFRRLKQLLKDDSRVFVFFANEHHCETF 125          
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|642030749|emb|CDQ94529.1| (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 99.3673 bits (246), Expect = 1.536e-22
Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 0
Query:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
            M++SK F K+TR G +M+I+ EHYLRDDI  G+   +EC     EE V   +  +E  L                P   + DTN+ L QID LE     + ++  V++LQTVL+EV+  S  +Y+RL  +L D  + +  F NEH  E Y
Sbjct:    1 MLKSKTFVKKTRSGGIMKIVREHYLRDDIWCGSEVCTECKQ---EETVLQKDACIESNLCSF-------------PHYLLPDTNIVLSQIDILE-----DPLIKNVIILQTVLQEVRHRSAPIYKRLKDILHDKEKHFYTFTNEHHRETY 129          
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|642030750|emb|CDQ94530.1| (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 98.9821 bits (245), Expect = 3.106e-22
Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 0
Query:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
            M++SK F K+TR G +M+I+ EHYLRDDI  G+   +EC     EE V   +  +E  L                P   + DTN+ L QID LE     + ++  V++LQTVL+EV+  S  +Y+RL  +L D  + +  F NEH  E Y
Sbjct:    1 MLKSKTFVKKTRSGGIMKIVREHYLRDDIWCGSEVCTECKQ---EETVLQKDACIESNLCSF-------------PHYLLPDTNIVLSQIDILE-----DPLIKNVIILQTVLQEVRHRSAPIYKRLKDILHDKEKHFYTFTNEHHRETY 129          
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|209732782|gb|ACI67260.1| (Exosome complex exonuclease RRP44 [Salmo salar])

HSP 1 Score: 97.8265 bits (242), Expect = 1.926e-21
Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 0
Query:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
            M++SK F K+TR G +M+I+ EHYLRDDI  G+   +EC     EE V   +  +E  L                P   + DTNV L QID LE     + ++  V++LQTVL+EV+  S  +Y+RL  +L D  + +  F NEH  E Y
Sbjct:    1 MLKSKTFVKKTRSGGIMKIVREHYLRDDIWCGSEVCTECKQ---EESVLQKDACIESNLCS-------------FPHYLLPDTNVVLSQIDILE-----DPLIKNVIILQTVLQEVRHRSAPIYKRLKDILHDKEKHFYTFTNEHHRETY 129          
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|507534042|ref|XP_004651077.1| (PREDICTED: exosome complex exonuclease RRP44 [Jaculus jaculus])

HSP 1 Score: 98.9821 bits (245), Expect = 2.856e-21
Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = 0
Query:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
            M++SK F K+TR G VM+I+ EHYLRDDIG G    + C             G   GG     +  H+       P   + DTNV L QID LE     + V+  V++LQTVL+EV+  S  +Y+R+  +  +  + +  F NEH  E Y
Sbjct:    1 MLKSKTFLKKTRAGGVMKIVREHYLRDDIGCGAPGCAAC-------------GGAHGGPALEPQPQHQASSLWPRPHYLLPDTNVLLHQIDVLE-----DPVIRNVIVLQTVLQEVRNRSAPIYKRIRDVTNNQEKHFYTFTNEHHKETY 132          
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|1176309709|ref|XP_020657498.1| (exosome complex exonuclease RRP44 [Pogona vitticeps])

HSP 1 Score: 98.5969 bits (244), Expect = 3.784e-21
Identity = 58/150 (38.67%), Postives = 79/150 (52.67%), Query Frame = 0
Query:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
            M+ S+ F KRTR G VM+++ EHYLRDDI  G      C        V+  E    G L E +  G    +    P   +LDTNV L QID LE     + V+  VV+LQTVL+EV+  S  VY+R+  ++ +  + +  F NEH  E Y
Sbjct:    1 MLTSRTFLKRTRAGAVMKVVREHYLRDDISCGAAACETCGE------VRGGEDGPSGPLLEAQPSGAASSLCPD-PHYLLLDTNVLLHQIDILE-----DPVIRNVVILQTVLQEVRKRSAPVYKRIRDVIANPEKHFYSFTNEHHKETY 138          
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|817057588|ref|XP_012269707.1| (exosome complex exonuclease RRP44 [Athalia rosae])

HSP 1 Score: 98.5969 bits (244), Expect = 4.298e-21
Identity = 53/150 (35.33%), Postives = 82/150 (54.67%), Query Frame = 0
Query:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
            M+ +K FF++T+RG +++I+ EHYLRDDI  G+   S+C   + + ++              +E           P   +LDTN+ L+QID LE     E  L  VV+LQTVLEE++  S +VY++L  ++ D  R +  F NEH  + Y
Sbjct:    1 MLTTKTFFRKTKRGNILKIVREHYLRDDIWCGSNLCSKCKHKSKDLIL--------------DEDPDSKSSLYPEPHYLVLDTNIVLDQIDVLE-----EDALCNVVILQTVLEEIRHRSSNVYKKLRDIIGDPKRKFYVFVNEHHKDTY 131          
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|545704350|ref|XP_005704498.1| (exoribonuclease R [Galdieria sulphuraria] >gi|452820942|gb|EME27978.1| exoribonuclease R [Galdieria sulphuraria])

HSP 1 Score: 98.2117 bits (243), Expect = 5.386e-21
Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 0
Query:    2 IRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
            +R K+F KRTR+G + ++ +EHYLRDDI   +   + C    P + V+L+    E  L                    I DTN+ L Q+D LE+      V+  V+LLQTVL+E +  ++SVY RL KLL D SR+++ F+NEH  E +
Sbjct:   73 VRGKSFIKRTRKGNIAKVTKEHYLRDDIPCLSPLCTTC----PHKEVKLLSNSAEFYL--------------------IPDTNIVLHQLDLLESD-----VVTDVILLQTVLQETRNRNMSVYERLKKLLNDQSRSFVSFSNEHHKETF 192          
BLAST of EWM28887.1 vs. NCBI_GenBank
Match: gi|671688627|emb|CDS02945.1| (hypothetical protein LRAMOSA00347 [Lichtheimia ramosa])

HSP 1 Score: 97.8265 bits (242), Expect = 7.599e-21
Identity = 56/150 (37.33%), Postives = 85/150 (56.67%), Query Frame = 0
Query:    1 MIRSKAFFKRTRRGKVMRILEEHYLRDDIGLGTLHGSECSALTPEELVQLMEGRVEGGLKEGEEGGHEGGVKKKTPTLTILDTNVALEQIDFLENAEASEAVLGVVVLLQTVLEEVKGNSLSVYRRLHKLLLDDSRAYIFFANEHAAEAY 150
            M+RSKAF KRTR+G V+++++EHYLRDDI   T   + C+A   + L  L +   +  L +              P   I DTNV + Q+D +E+    +     V++LQTV EE++  SL+VY RL+ +L D +R +  FANEH  + +
Sbjct:    1 MLRSKAFVKRTRKGNVVKVVKEHYLRDDI---TCSSAACNACEHQSLPILSKNPRKSELTD-------------RPHYIIPDTNVFMNQLDIMEHPSIKD-----VIVLQTVREELRHLSLAVYNRLNAILADKNRRFYLFANEHHRDTF 129          
The following BLAST results are available for this feature:
BLAST of EWM28887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111322|gb|EWM28887.1|2.050e-104100.00exosome complex exonuclease rrp44 [Nannochloropsis... [more]
gi|299115727|emb|CBN74292.1|2.492e-3144.67conserved unknown protein [Ectocarpus siliculosus][more]
gi|642030749|emb|CDQ94529.1|1.536e-2237.33unnamed protein product [Oncorhynchus mykiss][more]
gi|642030750|emb|CDQ94530.1|3.106e-2237.33unnamed protein product [Oncorhynchus mykiss][more]
gi|209732782|gb|ACI67260.1|1.926e-2138.00Exosome complex exonuclease RRP44 [Salmo salar][more]
gi|507534042|ref|XP_004651077.1|2.856e-2136.67PREDICTED: exosome complex exonuclease RRP44 [Jacu... [more]
gi|1176309709|ref|XP_020657498.1|3.784e-2138.67exosome complex exonuclease RRP44 [Pogona vitticep... [more]
gi|817057588|ref|XP_012269707.1|4.298e-2135.33exosome complex exonuclease RRP44 [Athalia rosae][more]
gi|545704350|ref|XP_005704498.1|5.386e-2137.58exoribonuclease R [Galdieria sulphuraria] >gi|4528... [more]
gi|671688627|emb|CDS02945.1|7.599e-2137.33hypothetical protein LRAMOSA00347 [Lichtheimia ram... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1790rna1790Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications