rna1784, rna1784 (mRNA) Nannochloropsis gaditana

Overview
Namerna1784
Unique Namerna1784
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2388
Alignment locationCM002458.1:117828..118573 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102619g1.4564.mrna
Orig protein idgnl|cribi|Naga_102619g1.4564
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:117828..118573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102619g1gene1714Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28893.1cds1780Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1784rna1784-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1784 ID=rna1784|Name=rna1784|organism=Nannochloropsis gaditana|type=mRNA|length=2388bp
GAAGGAATAGATTGAAGATGGGCAATGCGATGGACGAAACCCGGCGTATT
GGCGCTCAGTCACCATGTATCACGCATTTTGGCTTCAGGTTTTTCGTCTG
GACTTGGTTCCTGTTCCCGGATACCCTTCCACATTTCCCGCTTGAGCTGT
GCCTTCTCCTCTGCGTGTTATCTCCCTGCACATCTTGATTGCTTTCCAAG
TGCCGTGTTTTCCCCCTCCTCTCCTTTCACACACACATCTTTTCCTTGTT
CTTCACGCTCCCCCTTTGTCCCTCCCAGACGACATGAACCTTTCCCCCTT
ACGCGATGTGCTGGAACGTATCGCGGAAGACGCCCAAGAACGGCTCATCT
ACGTGGCAGAGCGGGTCCTGAGGGTGGAGGTGGAGGGCTTCCGGCCTACC
CCGGCGGATTTGGAGTACCCCGGGAAGCTGGAAGCCTACTGGGAAGCCAA
GCGGAGGGGACAGGAGGGTGGAAGCCAGGAAGGGAAAGAGGGAGGGGAGG
AGGAAGGGACCGCAGGGAAGGAAGGGGAAGGAGCGGCTGAGGCGGAGGAA
GGGATGCAGGCCCTGTCGAGCGGCGGCATGGGCAAGGTCCTGCCAGTGTA
CGCAACGTGGTTCCCAACGCTGCAGATGACTCTCTCCCTCTTGAGCAAAA
TTTATCGGGCGGTGGAGCTCCATGTCTTCCAAGAAATGGCCCAGCAGGCA
TTGGCCGCTTGTACTTATTCGTTTTTGGCCGCCGCAAAGGTCTTGCGGGA
GCAGAAGGGGGATATGGACGCCGATTTGTTCCTGGTCAAGCACCTCCTCA
TCCTCCGAGAGCAGCTGGTGCCCTTTGACATCGAGTTTGCGGCCATTGAA
AAGAGGCTCGATTTCAATTCCACGCGAGGTGCCTTGACCCGTTTCTTTGT
GGACAGGCACAACCTCTTCCGCATGGGCACAGACAATGCCCTCCTTTCCC
TCGCCTTGGGCTCGGTGCCCACCGTCAATGAGGAAGAGGTGGATACCAGG
AAGGAGCTAGAAGCCTCCCTCAAGAGCGCATGTAATGCTTTCATACTCCA
CGCAACCAGCCACCTTGCCGAGCCGATCGCCACCCTTTTACAGAAAGCCC
GTGCTTTCTTACCCACGTCCTCCTCCAATCCCTCCCCTCCTTCCTCCTCT
CTGCCCTACATCGACCCCACCACCCTTCAAACCCTCTCCGCACAAGCCTT
TCTTCAACCCGCACGCCTGGAGGCGACTCTCTTGGAAGCTCACGAGGGTT
TGCTCACTGCCCTGCCAGCACTATCCCACCTCCTGTCACTTTATCTGGAT
CATAACAACACCAAAGCCATTTTGTTTCGACCTGTGCGGCAGCGTATCTT
GACGCTTCTGCAGCAGCTCCGTGATTTGTTGGGGCTTCTTTTCCACACTT
CTACAGATGTGGTCAAAATTGAGGGCGGAAAAGAAGGGGGGGCAGAGGGA
AGAGTGGAGGCTGAAAAGAAGGAAAGGGGATTGCCGGAAGCGATCGAGGG
TCTTTTGACGGGCATGACACAGAGCATCAACAAAGTCTTTGAAGGAGAGC
TGGAGCATTGGATGGATGGGAGCGGAAGTCGGAGCGCCAGCGCTGCCAAT
TCTCCCACCCGAATTCGACCGTCGGACGTGGAAGAGAGCGGGATATAGGG
GCGTTTAAAGTGTCTATCGTCGCGTGTATCAGTGTGTGGAGTGTCCAGCG
GAGTGGCGTCTCGGGGGCTCAAAGGCATTGGGACGGACGCTGCCACTTGG
AGCTTTTACTCGATGCGTCCGAACGCCTGAAAAGCTTTCGGTTGCGTGGA
AATCGTCGAAGGAAGACCTACCTATTACCTATGACAACCACCGCACACCT
GCTTAACTTATAACGATCCGTTTGCCATCTTATTTTGACGTTTTGCCCAT
GACATTTTCATCCTTGATCTCATCGGCTTCCCAATGCTTGCGCGGAGAAG
TTCGGTAATGAATGGATAGTTAGCGTGAAGCGCTTGCCTATTTACCTTAT
CTAGTCCACAATTCTGAGGGAAAACTCATCCGCACGTGAATGACATGTAC
AGGCTTGAATCGAGTAAATAAATGGAAATTCAATCGATAGAAAAGCAAGC
ATCATCGGGTAGAAATATTGGATTGCTTACGAAAATGTGGGCGATAATGA
TCCGTTCGCTCGATCACATCAAGCACAGTAATGCACAAAGAAATGACTAC
TAGGTGCGAAACGTATGCTATCAGGATAATAATGGCATCAGGAAGAAGAT
GTCAAGGCGAGGGATGCGATGCAAGCAACATGTACTCGATTTAGGGCGGG
TTTGGGGACGTCATCGCTTTTCTTTTGACTGGACGTGCCATTTACAGGGA
AAATACAGCAAGTATATGAAAGAGACCAACTTTTCTGA
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protein sequence of rna1784

>rna1784-protein ID=rna1784-protein|Name=rna1784|organism=Nannochloropsis gaditana|type=polypeptide|length=145bp
FLPPLLPSLPSFPSSFDGPVRSFRLRTLFASLPPPFPLPPSPLQLYNDFF
GPPMRVIEEEGEAISLQGLPPSSSFPPAHRPYRASSQEYYESGALPQLLR
GLCIYLHETLRPLVIQEVSCPRFPPPLLPALLPALPFLLSPLTYP
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mRNA from alignment at CM002458.1:117828..118573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1784 ID=rna1784|Name=rna1784|organism=Nannochloropsis gaditana|type=mRNA|length=746bp|location=Sequence derived from alignment at CM002458.1:117828..118573- (Nannochloropsis gaditana)
TTCCTCCCTCCCCTCCTTCCCTCCCTCCCCTCCTTCCCTTCCTCCTTCGA
CGGCCCCGTTCGTTCCTTTCGCCTCCGCACACTCTTCGCTTCCCTTCCTC
CCCCTTTCCCCCTCCCTCCTTCCCCCCTCCAGCTCTACAACGATTTTTTC
GGCCCTCCCATGAGGGTCATCGAGGAGGAGGGTGAGGCCATATCCCTCCA
AGGCCTTCCTCCCTCGTCCTCTTTCCCCCCCGCGCACCGTCCCTACCGTG
CCTCTTCCCAAGAATACTACGAAAGTGGCGCCCTGCCCCAGCTCTTGCGA
GGGCTTTGCATCTATCTGCACGAAACGTTGCGACCGCTGGTCATTCAAGA
GGTCTCGTGTCCCCGCTTTCCTCCCCCTCTCCTTCCGGCCCTCCTTCCCG
CCCTCCCTTTCTTGCTTTCTCCCCTCACTTATCCTTAGAAACGTCCCTTT
CGCTCTTTGGTGCTCTAGCCATACCGGCCGGTTCGACTCTCTCCTCCCTC
CCCTCGTTCCCTCCAGTGAACGCGGCTTTGCGCCATTTCCATCGCCCTTC
GTCGCGATATCCCCATCTTCCCTCGCTTCCTCTCACATTCCTTCACCTTC
TCATCTGTCACCCTCCTTCCCTCCTTCCCACCCTTCCTCCCTCCCCCCTT
GCTGCGCTCGTGCAGGGTGACCTAGATAATCTGTGTACGCTCATTCACGT
GGCGCGAGAGGATGTTATCCAAGGTCAAATGCCCTTGCGAGGTAAA
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Coding sequence (CDS) from alignment at CM002458.1:117828..118573-

>rna1784 ID=rna1784|Name=rna1784|organism=Nannochloropsis gaditana|type=CDS|length=438bp|location=Sequence derived from alignment at CM002458.1:117828..118573- (Nannochloropsis gaditana)
TTCCTCCCTCCCCTCCTTCCCTCCCTCCCCTCCTTCCCTTCCTCCTTCGA
CGGCCCCGTTCGTTCCTTTCGCCTCCGCACACTCTTCGCTTCCCTTCCTC
CCCCTTTCCCCCTCCCTCCTTCCCCCCTCCAGCTCTACAACGATTTTTTC
GGCCCTCCCATGAGGGTCATCGAGGAGGAGGGTGAGGCCATATCCCTCCA
AGGCCTTCCTCCCTCGTCCTCTTTCCCCCCCGCGCACCGTCCCTACCGTG
CCTCTTCCCAAGAATACTACGAAAGTGGCGCCCTGCCCCAGCTCTTGCGA
GGGCTTTGCATCTATCTGCACGAAACGTTGCGACCGCTGGTCATTCAAGA
GGTCTCGTGTCCCCGCTTTCCTCCCCCTCTCCTTCCGGCCCTCCTTCCCG
CCCTCCCTTTCTTGCTTTCTCCCCTCACTTATCCTTAG
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Synonyms
Publications