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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100013g40.9831.mrna |
| Orig protein id | gnl|cribi|Naga_100013g40.9831 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:468263..469572 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna178 ID=rna178|Name=rna178|organism=Nannochloropsis gaditana|type=mRNA|length=5098bp
GACCTGCAAAGTCGCCCAGCTCGTGTGTCGCACGGCGCATTAAATAAGCA
TCATATTGATGAATGATGCATCTAAGTTCTTGTGTGTCACATGTTTTTTC
GGGAAATTCAATGTCCTGTACGTCTCAAACGGGCCACATTTCTTGCGTCG
GGACCGAGGCCGGAGGGAAAGAGGCGAGCGTTCCTGCAGGGACGGACATC
GGCTTACCACGTCGCGCACGAATAACACATGACAATCCATCTTCCACCAG
ATCATGCCAGTGACTCCATACCAGTAAGCTCGAGAAGCAGGCTGCAGTAC
CCGGGATCTGCCGGTTTGATTTTGGAAGTGGTGTGTAGCAAGCTGTTTGC
TGTCGGGTTGCGACGTCCTCGCTCGGTTGTTCCATAAAAAAGTCCTTTCC
CAGAAGTGGCGCTCAATTATCAAATCATCCCACTATCAAGCTTGTAGAAT
GGATCGGGCTGCTTTTAACGCCACAAGCAGGGCAAGACGGTGGCATTATC
TGCTACCTGGCCTGTTCGGATGCCTGCTCCTGGGCATTTCGTTGACTCCC
ACACCATTTTATCAAAGGGGTGTGGGGTCAAGTGATCGAGGCGTAGGCAT
CAAGAAATCGACGGATGATTTTTGGTTGCGTGCCAAGCTAACACAGTCCT
CTCAAGAGGCTCTCGTCTCTCACACGGGGAAAGTGGCTGAGAAAGACGTC
TCTTCGAGCTTATTGCAGTACTTCGCAGAGGCACGCAAAGAGGGGCAATT
GAGCGCCTCGGCTTTCGGTGAAGTCGAGAGACTCCTCCAACAGCACGAGC
AGCAACACAAGCCTACACAGAGAGATGCGACATTGTCTCAACCATCTTGG
CCCTTGTCGGGGGCCTCTGGTGGCGGAAAGAGCCGTGACGTGGCGCTTCA
GGACAAAATTTACTGGAAGGGCCGCGAGCGCCGAGAAGCCGAGTTGGCCA
AACTCCATCACAACTACTCCGCAATCAAGCCTTTCGATGGATGGGGCCCC
ATCTACATCTGGGACTGGTTCAACCCCGACTACGTCTGTTCCAGCATGGA
GCGCGTAGGCCGCGTGGGCGACGGAGGGAAGTGGATGTGTGACTTGGCGA
CCCTGCGGGCAAGGGCGGTCGAGGCGCACCGACCCTGCATCGTGTACGCC
TTCGGCATCAACGACGACACCTCCTTCGAGGAGGAGCTCGTGAATCGCAC
AGGCTGCCAAGTCTTCGCCTTCGACCCCACCGTCAAGGATCTGCCAGCCT
CCGCGGCTAACGTGACGCCCGCCCTGCAGTTCTACAAACAAGCCCTCGGT
CCCCGGGATGGACCTTCGCGGAATTTCCTCATGGAGCGAAACTTGCTGAG
CATCATGAAAGAACTGGGTCACACCTACGTGGACGTGCTCAAGGTGGACG
TGGAAGGAGCGGAGTGGGCATCGTTCGCGCCCGTCTTCGGGGCGGGGCCC
CTCCCTGTTGGGCAGCTCCTGATCGAGCTCCACTACAAGGACGTGGCCAC
CACGTTCGATTTTTTCACGAACCTGGAAGGGGCAGGCTTTCGGGCATTTT
CCCGCGAGACCAACTACCACCCTTGCGTGACGGGCAAGATGCCCGTGGCG
ATAGAGTACTCCTTCGTGCACCCATACACTTATCCCACGGGCGACCCCAC
GCCGGCCTCCAAGGCCATGCTGGCCCGCCAACCCGACTACGAGCGCAAGA
ATGGCGTGATCTACATGCTCACACAGCAGGCACGTGTGCACACACACCTT
CTTGGCATGCTGGAGGGGCTCGACAAGCACTTCAACGCGGCCCCAGGGCG
CGGTTACCCCGTCTTGATCTTCCACGACGACTATACTCCGGAGGACGAGG
CGCTCGTGCGGGCCAGCACCACCAGCAACGTCTCCTTCCACCGCGTCTCC
TTCCAGGTCCCGGCCTTTCTGGACAAGGAGCGTATCCCGGAGCGGACGGA
GTGCAGCAAGCACTCGTCCACCCTCGGCTACCGACACATGTGTCGCTTCC
TGGGCCTCCAAGTCCAGCACCTGCTCCAGGACTTCGAATGGCATTGGCGC
CTGGACGACGACTCTGTTTTTCTGGCGCCCATCGGCTACGACCCTTTCCG
GATGATGGCGGAGAACGGGAAGCGGTACGGGTTCAACCGCATCCTGCATG
ACAACGCGGACTGCGTGGTGGGCCTCTGGGACGTGGCCAAGAAGTTCGCC
CGGAGCCGCGGCCTCTCCCCGACCTTCCTGGACAATTGGGATGCAGGCGT
CACCTTTTACAACAACTTCGAAATCTCGCACCGGTCCATATGGACCGACC
CCGTCGTGCAAGATTTCATGGATCACATCGATGCGCTTGGCGGGATCTAC
TACGTGCGGTGGGGGGATGCGCCCATTCGCTCGCTGGCAGTGGCCATGGT
CGTGCCCGAGACGGAGGTCCACTTTTTCTCCGACGTGGGGTACGCGCATT
TGCCCTACCATCGGCACGAGCCTCGTGCGTTGCCGTCGCCCTTGGAGGGC
GCACTCTGGCACTTGGACGGAGCCCACGAATACATCCGGGACGTGGAGGA
AGACCAACAGGTGAAAAAGGCGAGGACCATGGTGCGACGGCGGCAACACG
GGGTCGTGGTCATCTTTAGCACGCGCGAGCGCTTTGACTACCTGAAGAGG
TGCCTGGCATCCTTTGAAAAGCACTTCAACCAGCACCATGGATACCACGT
GTGGGTATGGTCTCATGGACTTAGCTACGACCAGCGCCTGGAGCTCCGAG
CCTTGTCATCGGCGCCCATGCGCATCGACCTGCTTGATCAGCCCCTGAAC
CTCACCGCCCCAACAAGCGCCACGGAGGCGGCCAGGACGCCGTGTGGACC
CCGGGATGCCCACTCCTCGCGGCTCCGTGGGTGGGAGGTGTCGCGGGTCA
TCGCCAAGCGATACTTCTGGCAGTGGCGCCTTGCGGACGACGCCGTCTTT
ACGGAGGACCTGGTGGAGGACCCGTTTTTGAGGATGGCACGGAACAAAGC
GACCTACGGCGTGGCGGCCGTGCGCCCTGTCCCCCTGTCGGCTGGCGCCT
GTGTGGGACGCTTGGTCGAGGAGGCGACCAGAGGGTTGGGATTGGAAGGG
GAGGCGGTAGCGGAGGTCCGTGACATGGTGGAGTCGGTCTACTTCGATCC
AAGCTTTGAGGTCTCCCACCAGAGTGTCTGGACAGATTCCAAGTGGAATG
CCCTGATCGAAGTCCTCGAGACCAGCGGGCTCGCTGTAGACGGCGACGGG
GAGAGCCCAACGTCCTTTCTGGGGAATGTGGACGACGCTTTCCTCCGGAG
TCTAGGTGTTGCCTTACACCTGCAGGGAGGCATGGGCGCCTTCCACATTT
TTGACGACTTGCACCCGGTGGACCTCTCCGCAAGCCTGTTGCCATGGTCG
GAGCCGCCCTCCCACCCGACCCAGGAGTCGCATATCCGCGTGGGAGAACA
CCGGGTGACAGTGTCGCAGGACTCGCATTCGCTCACCGCCTTATTCCGCC
CCCGGCACCTTGGCTTCCTGGATGCCGAACTGGGGCCGCCCGTCCCTATT
CCGCGGCATGTGTCTTCTTCCGACGCCACTAGGTCGGGAGAGCCAGATAC
CGACTTGGATATCGCCTGGATTTTGGGTAAGACTCGCATTGGCCACTTGA
ATAACACCAAGCCAGAAGTCGCCTTCGAGCTGGATGACGCGGTGGCCATG
CTCTCTGCCGCCGAGGGGGACGCTGACTTCTTTTGGAGGCACACGGGCAG
TCAACGTGCACCCAACGCGATCTTCAACGACGGCACGTTGGGGGCTCACC
AGGCCCTGGTGCCCACCGCGGGCTTGGCGGTGGTCCCTGAGGACCATCCG
GATGAGCTCCGTCTTGTCGTGCTCTGCCAGATCCGAAATGTCAGCGGAAA
CGTCTATGAAGGACAGCGCACCCAACTGGGCTCGGCGATAGCGGTGGTGA
GTAATGCCCATCAGAGGCCTGAACTGTGGGAGTACGACATGCGGCGGATC
CCCGGTACACATACCTGGAGCGGATGGCACACCGCCCTGACCCTGGTCGA
TGGGAGCAGCGTCTCCCGAAGACCATCGACGGACTACGTTTACATCTTGG
GGGAGCGAGCCGCCAACATCACGACACATGACTCCTCTTACATCAAACGG
GAGCACCTCGTGGGCAAGCTGCCTGTATCCTCGTTGCTGGCTATGTCGAT
GGAGGCCATGGAATTCTTCGTTGGCCGGGCCCCAGGGGATACGAGCCGGG
AAACGAACGGGAGCAAGGGTCAGTGGGCGTCCTTCGCGGAGCATTTCCTG
CCGGCCCATGGCCAAGTCGAGGCTGGCATGCCCTCGGTCGAGGCCCTCTT
CCCGTCGGCGGACGGCAAGGCGACGGCCTTGGCGGCCGAGAGCGTGGGGA
TGGGCTATTTGCCAGGACCGAATCTGTGGTTCGTCGGCGACATTGTCCCG
CCTGCCCAAGGGCGCCATGGGCTCGGAAAACGTCTTGTCCTTAAAACGGC
CGAGGCGGTCACGGGGCCCTGGGAGGACCACAGTGTGGTGGAGTTGCCTC
TGGATTATTCAAGGCGCCAATACGTCTGCCCCAGCCTGTACGTCCTCCCC
AGCTACTCGCGAGACCGGGCGTGGGAGGCCGCGATAGGCCTTGCGTGCTC
GATCAAGGGCCACGGGGTTCGCCCGGTGATTGGAGGACGTTCCACTTCCA
CCGTCCAAGTCGGGCCCACCATGGTAAATGTGTTTCGACTCGGCTTTCAA
GCTCTCTCCGATACAGAGGTGGATGCAATACCAACACGATAGAGGAGAGG
ACGCAAGCAATGCATGGTGAGCGTCATTGCAAGCGAGAATATTAGTGCAC
ATTGTGAATAAAAGGCGAACGTGGCAAACTGAGTGAATGCGGGCGAGATG
CCTGCGCATGTTTGTAGAGACACGCGAGGTGTTCACATATGCTTGTAATG
GTTGGCGATAAAAACAACATGTCGATTAAAAATGCGAAAAATATGAACTA
AAGTGACGACAATAGGTAGCTTGTCCCAACTTCTCAATTGAAAACGAAGC
ACTTAGTTACTTTCAATTTCTTGTCGGGCTGCCGGTCGTTCAGGTCGT back to topprotein sequence of rna178 >rna178-protein ID=rna178-protein|Name=rna178|organism=Nannochloropsis gaditana|type=polypeptide|length=378bp
MDSNRPTKRLIHHYIKQHRGWHNVCSLTAVRKAHMRVIVSGIAVLVTCLL
VTNLILERRNGRGGNFLHLLRLGGINAGAPARLRQDLPLLGKARSYVSYD
CGGGCAKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWD
GLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDL
LDDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKV
APWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSG
EDAVLFNYNDGKYVAHLTRADNLDQDARLLRLLVLKAAFFKSMGEMAEED
IQGGRRVVEARQREGVEKVKAPGHEGTH back to topmRNA from alignment at CM002455.1:468263..469572- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna178 ID=rna178|Name=rna178|organism=Nannochloropsis gaditana|type=mRNA|length=1310bp|location=Sequence derived from alignment at CM002455.1:468263..469572- (Nannochloropsis gaditana)
ATGGATTCGAACCGGCCAACGAAGCGGCTTATCCATCATTACATCAAGCA
ACACCGGGGGTGGCACAACGTTTGTTCCTTGACCGCCGTCCGGAAGGCGC
ACATGCGTGTGATTGTCAGTGGGATAGCAGTACTAGTCACGTGCTTACTC
GTCACCAATTTGATATTAGAGCGTAGGAATGGTCGTGGGGGCAATTTTCT
GCATCTTCTTCGGTTAGGTGGCATAAACGCGGGGGCGCCTGCTCGACTAC
GACAAGACCTGCCTTTGCTGGGCAAGGCGCGGAGTTATGTATCGTATGAC
TGTGGAGGTGGTTGCGCCAAATCTAACATTCTCCTTTTGCAAACGTCGGA
CGGAGGCTCCACGAGCACTTACTCCAAGATGCTGGACGCTCTCCAAAGCA
CTCATCTCGCTTACGCTGCTCAACGTGGCTTCCACTACTTGCGGTGGGAC
GGGCTGATGAAAGGACGACAAGCCTGGCATGCCACCTACAATCGAATTTT
TCTACTGCACGCGCTGCATGAGTCGAGACGGTATGAGTGGGTACTCTTCC
TGGATCCAGACGCCATAGTCCGGGATCCACGCTTGAATGTGGAGGATTTG
CTCGACGATCGGTACGCCGTGCTGGGTTGCCGAGGTGGTGATGATCCCGA
CCTATTCTGGGATATAAATATTGGCGTTGCATTCTTCAATCTGCGGCACA
AGGAATTTGGAAGTTTGATGAAGGAATGGATGGCAGCCGTGCAAAAAGTG
GCGCCGTGGACCTTGGAAAGGGGGGGGGGCACGGCAGCGTACATCACCAT
GGGGCAAGGACCGCGCGTGCGGGACGATCAGCAGGTAAAGGAGAAAAAAG
GGGCTAACGTCGCTGAGCCGAAAAGAGACTTACGGAGGGTCAATCCGACT
TACGCATCCTATCGGCCATGTGCCGAGGAGGAGACAACTTTTTTGGTGGA
TGGGACGGGGCATATCATCTAATTTCTTATTATATTTCTTTTTAATTCCT
CTTTCAGATGTTCCACGACGTGCTGTCTAGACATCCTATGGGAAAGGCGC
TTGTGAAGCGCTACTATAGCGGAGAAGATGCGGTCTTATTCAATTACAAC
GATGGCAAATACGTAGCTCACTTGACACGTGCAGATAATCTGGATCAGGA
CGCTCGTCTCCTTAGACTTTTAGTGCTGAAGGCGGCCTTTTTCAAATCCA
TGGGAGAGATGGCCGAGGAGGACATTCAGGGGGGTCGTCGTGTCGTAGAG
GCGCGACAGCGCGAAGGCGTGGAGAAAGTCAAGGCCCCAGGGCACGAAGG
TACTCACTAA back to topCoding sequence (CDS) from alignment at CM002455.1:468263..469572- >rna178 ID=rna178|Name=rna178|organism=Nannochloropsis gaditana|type=CDS|length=2274bp|location=Sequence derived from alignment at CM002455.1:468263..469572- (Nannochloropsis gaditana)
ATGTTCCACGACGTGCTGTCTAGACATCCTATGGGAAAGGCGCTTGTGAA
GCGCTACTATAGCGGAGAAGATGCGGTCTTATTCAATTACAACGATGGCA
AATACGTAGCTCACTTGACACGTGCAGATAATCTGGATCAGGACGCTCGT
CTCCTTAGACTTTTAGTGCTGAAGGCGGCCTTTTTCAAATCCATGGGAGA
GATGGCCGAGGAGGACATTCAGGGGGGTCGTCGTGTCGTAGAGGCGCGAC
AGCGCGAAGGCGTGGAGAAAGTCAAGGCCCCAGGGCACGAAGGTACTCAC
TAAATGGATTCGAACCGGCCAACGAAGCGGCTTATCCATCATTACATCAA
GCAACACCGGGGGTGGCACAACGTTTGTTCCTTGACCGCCGTCCGGAAGG
CGCACATGCGTGTGATTGTCAGTGGGATAGCAGTACTAGTCACGTGCTTA
CTCGTCACCAATTTGATATTAGAGCGTAGGAATGGTCGTGGGGGCAATTT
TCTGCATCTTCTTCGGTTAGGTGGCATAAACGCGGGGGCGCCTGCTCGAC
TACGACAAGACCTGCCTTTGCTGGGCAAGGCGCGGAGTTATGTATCGTAT
GACTGTGGAGGTGGTTGCGCCAAATCTAACATTCTCCTTTTGCAAACGTC
GGACGGAGGCTCCACGAGCACTTACTCCAAGATGCTGGACGCTCTCCAAA
GCACTCATCTCGCTTACGCTGCTCAACGTGGCTTCCACTACTTGCGGTGG
GACGGGCTGATGAAAGGACGACAAGCCTGGCATGCCACCTACAATCGAAT
TTTTCTACTGCACGCGCTGCATGAGTCGAGACGGTATGAGTGGGTACTCT
TCCTGGATCCAGACGCCATAGTCCGGGATCCACGCTTGAATGTGGAGGAT
TTGCTCGACGATCGGTACGCCGTGCTGGGTTGCCGAGGTGGTGATGATCC
CGACCTATTCTGGGATATAAATATTGGCGTTGCATTCTTCAATCTGCGGC
ACAAGGAATTTGGAAGTTTGATGAAGGAATGGATGGCAGCCGTGCAAAAA
GTGGCGCCGTGGACCTTGGAAAGGGGGGGGGGCACGGCAGCGTACATCAC
CATGGGGCAAGGACCGCGCGTGCGGGACGATCAGCAGATGTTCCACGACG
TGCTGTCTAGACATCCTATGGGAAAGGCGCTTGTGAAGCGCTACTATAGC
GGAGAAGATGCGGTCTTATTCAATTACAACGATGGCAAATACGTAGCTCA
CTTGACACGTGCAGATAATCTGGATCAGGACGCTCGTCTCCTTAGACTTT
TAGTGCTGAAGGCGGCCTTTTTCAAATCCATGGGAGAGATGGCCGAGGAG
GACATTCAGGGGGGTCGTCGTGTCGTAGAGGCGCGACAGCGCGAAGGCGT
GGAGAAAGTCAAGGCCCCAGGGCACGAAGGTACTCACTAAATGGATTCGA
ACCGGCCAACGAAGCGGCTTATCCATCATTACATCAAGCAACACCGGGGG
TGGCACAACGTTTGTTCCTTGACCGCCGTCCGGAAGGCGCACATGCGTGT
GATTGTCAGTGGGATAGCAGTACTAGTCACGTGCTTACTCGTCACCAATT
TGATATTAGAGCGTAGGAATGGTCGTGGGGGCAATTTTCTGCATCTTCTT
CGGTTAGGTGGCATAAACGCGGGGGCGCCTGCTCGACTACGACAAGACCT
GCCTTTGCTGGGCAAGGCGCGGAGTTATGTATCGTATGACTGTGGAGGTG
GTTGCGCCAAATCTAACATTCTCCTTTTGCAAACGTCGGACGGAGGCTCC
ACGAGCACTTACTCCAAGATGCTGGACGCTCTCCAAAGCACTCATCTCGC
TTACGCTGCTCAACGTGGCTTCCACTACTTGCGGTGGGACGGGCTGATGA
AAGGACGACAAGCCTGGCATGCCACCTACAATCGAATTTTTCTACTGCAC
GCGCTGCATGAGTCGAGACGGTATGAGTGGGTACTCTTCCTGGATCCAGA
CGCCATAGTCCGGGATCCACGCTTGAATGTGGAGGATTTGCTCGACGATC
GGTACGCCGTGCTGGGTTGCCGAGGTGGTGATGATCCCGACCTATTCTGG
GATATAAATATTGGCGTTGCATTCTTCAATCTGCGGCACAAGGAATTTGG
AAGTTTGATGAAGGAATGGATGGCAGCCGTGCAAAAAGTGGCGCCGTGGA
CCTTGGAAAGGGGGGGGGGCACGGCAGCGTACATCACCATGGGGCAAGGA
CCGCGCGTGCGGGACGATCAGCAG back to top
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