EWM30543.1, cds178 (CDS) Nannochloropsis gaditana

Overview
NameEWM30543.1
Unique Namecds178
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:468739..469572 -
Alignment locationCM002455.1:468263..468565 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30543.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g40.9831.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:468739..469572 -
CM002455.1supercontigCM002455.1:468263..468565 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
Homology
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|585113207|gb|EWM30543.1| (hypothetical protein Naga_100013g40 [Nannochloropsis gaditana])

HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query:    1 MDSNRPTKRLIHHYIKQHRGWHNVCSLTAVRKAHMRVIVSGIAVLVTCLLVTNLILERRNGRGGNFLHLLRLGGINAGAPARLRQDLPLLGKARSYVSYDCGGGCAKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRLLVLKAAFFKSMGEMAEEDIQGGRRVVEARQREGVEKVKAPGHEGTH 378
            MDSNRPTKRLIHHYIKQHRGWHNVCSLTAVRKAHMRVIVSGIAVLVTCLLVTNLILERRNGRGGNFLHLLRLGGINAGAPARLRQDLPLLGKARSYVSYDCGGGCAKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRLLVLKAAFFKSMGEMAEEDIQGGRRVVEARQREGVEKVKAPGHEGTH
Sbjct:    1 MDSNRPTKRLIHHYIKQHRGWHNVCSLTAVRKAHMRVIVSGIAVLVTCLLVTNLILERRNGRGGNFLHLLRLGGINAGAPARLRQDLPLLGKARSYVSYDCGGGCAKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRLLVLKAAFFKSMGEMAEEDIQGGRRVVEARQREGVEKVKAPGHEGTH 378          
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|516083727|ref|WP_017514310.1| (MULTISPECIES: hypothetical protein [Cupriavidus] >gi|982560046|gb|KWR84253.1| hypothetical protein RN01_07030 [Cupriavidus sp. SHE])

HSP 1 Score: 125.561 bits (314), Expect = 2.539e-30
Identity = 82/226 (36.28%), Postives = 116/226 (51.33%), Query Frame = 0
Query:  106 AKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDR--YAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARL 329
            ++  ++L+QTSD  STS Y  ML     T   Y  + G  Y  + GL +G + WHATYNRI LL  L +     WVLF+D DA + D   ++   L D+  YA++    G   D FW++NIGV  FNL H    +++++W + + +   + LER     A    GQ P   DDQ MFH +L +HP    LV      E+   FN     +V    RA+N D + RL
Sbjct:    9 SEPEVILMQTSD--STSRYFDMLMVTAQTARRYCQRHGLRYQAFVGLKRGNRPWHATYNRIDLLQELVQRDFRGWVLFVDADAWIADMEFDLPAYLRDKSQYAMIAAPAGHSTDFFWNVNIGVMLFNLAHPFMRAIIRDWESFLSR---YQLERD----AIDWNGQIP---DDQGMFHQILDKHPESADLVLH----EEKSFFNSPWASFVRQAIRAENADIEQRL 218          
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|519049214|ref|WP_020205089.1| (hypothetical protein [Cupriavidus sp. WS])

HSP 1 Score: 116.701 bits (291), Expect = 6.522e-27
Identity = 82/233 (35.19%), Postives = 116/233 (49.79%), Query Frame = 0
Query:  102 GGGCAKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDR--YAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRL 332
                 + +I+++QTSD  ++S Y  M+     T   Y    G  Y  + GL +G +AWHATYNRI LL  L +     WVL++D DA + D   ++   L D+  YA++    G   D FW++NIGV  FNL H     L+++W A + +   + LER     A    GQ P   DDQ MFH +L +H   + LV       D  L N     +V    RA+N D D RL R+
Sbjct:   16 ANASGEDDIIVMQTSD--ASSRYFDMMMLTARTARRYCEHHGLRYQGFIGLKRGNRAWHATYNRIDLLQELIQRDHRGWVLYVDADAWIVDMTFDLRGYLRDKQGYAMIAAPAGHVRDFFWNVNIGVMLFNLGHPFTRRLVRDWEAFLSR---YRLERD----AIDWNGQVP---DDQGMFHQLLDKHADAEPLVLH----ADKSLLNSPWASFVRQAIRAENTDIDERLRRI 232          
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|981090778|ref|WP_059413228.1| (hypothetical protein [Cupriavidus basilensis])

HSP 1 Score: 113.62 bits (283), Expect = 7.043e-26
Identity = 84/226 (37.17%), Postives = 114/226 (50.44%), Query Frame = 0
Query:  109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDD--RYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRL 332
             I+L+QTSD  ++S Y  M+     T   Y  +    Y  + GL +G + WHATYNRI LL  L +     WVL++D DA V D   ++   L D  RYA++        D FW++NIGV  FNL H     L++EW A + +   ++LER     A    GQ P   DDQ MFH +L +H   K+LV       D  L N     +V    RA+N D D RL R+
Sbjct:   12 EIILMQTSD--ASSRYFDMMMLTGQTARGYCDRHQLRYQGFIGLKRGNRPWHATYNRIDLLCELIDRGFGGWVLYIDADAWVVDLDFDLRGWLRDKQRYAMIAAPAAHTSDYFWNVNIGVMLFNLGHPFTRRLVREWEAFLSR---YSLERD----AIDWNGQVP---DDQGMFHQLLDKHEDAKSLVLH----ADKSLLNSPWASFVRQAIRAENADIDERLRRI 221          
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|947703185|ref|WP_056365600.1| (MULTISPECIES: hypothetical protein [Sphingomonas] >gi|945667106|gb|KQX21675.1| hypothetical protein ASD17_06940 [Sphingomonas sp. Root1294] >gi|945819159|gb|KQY72990.1| hypothetical protein ASD39_00925 [Sphingomonas sp. Root50] >gi|946136124|gb|KRB88212.1| hypothetical protein ASE22_22510 [Sphingomonas sp. Root720])

HSP 1 Score: 85.1149 bits (209), Expect = 2.117e-15
Identity = 66/231 (28.57%), Postives = 108/231 (46.75%), Query Frame = 0
Query:  110 ILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDR--YAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAV-QKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKA--LVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQD--ARLLRLL 333
            +L +QT+ G     Y  ML A  + H AY A  G  +    G+ +G   W AT+NR+ +L          W L++D DA++R    ++   L  R  +A++   GG+     W+IN GV F NL  +   ++ + W+ AV Q V+   LE       +  +  G    DDQ +   VL      KA  L++R        +FNY  G++++   RA    +D   ++LR++
Sbjct:   21 MLFVQTASG---PLYETMLAATDARHRAYCAANGIDFWSHVGIRRGFHPWQATFNRVHMLADRLAEGWEGWFLYVDADAVIRQTMFDIRRYLGKRAQHALIAAPGGEQD---WNINAGVLFLNLGDERGRTIAQRWITAVGQAVSDEMLE--AMVEPWGRLPDGRDFPDDQHLLQMVLRDDEALKAGLLIER------DPIFNYRSGRFISQFIRATGAPEDRLEQMLRIM 237          
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|947702267|ref|WP_056364682.1| (MULTISPECIES: hypothetical protein [Sphingomonas] >gi|945668172|gb|KQX22738.1| hypothetical protein ASD17_05515 [Sphingomonas sp. Root1294] >gi|945814078|gb|KQY67948.1| hypothetical protein ASD39_07610 [Sphingomonas sp. Root50] >gi|946136783|gb|KRB88868.1| hypothetical protein ASE22_19960 [Sphingomonas sp. Root720])

HSP 1 Score: 85.5001 bits (210), Expect = 4.034e-15
Identity = 62/221 (28.05%), Postives = 104/221 (47.06%), Query Frame = 0
Query:  109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRY---AVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQD 326
             + +LQTSD      YS+ML A   T + Y  + GF Y  + G+ +G    HAT+NR+F+L  L +     WVL++D DA + D   ++   L D+    A++    G+   + W IN GV FFNL H    +L++EW      +    L          T+       +DQ M +  L ++      ++     ED ++FN+++ +++       +LD D
Sbjct:    2 ELTILQTSDAFK---YSRMLRATSRTAIEYCRRHGFAYESFVGIKRGFHGAHATFNRMFMLTELIDRGYRGWVLYMDADAYIYDLDFDLRAYLADKQGHSAIMTTIPGE--TVAWHINAGVLFFNLAHSSTAALIREWKRRFMAIPEERLR---------TLTSVWDYDNDQTMLYQSLDQN----VALREPVLFEDPMIFNHHEARFIRQFLH--SLDND 202          
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|806906023|ref|WP_046192789.1| (hypothetical protein [Sphingomonas sp. SRS2] >gi|806530770|gb|KKC26957.1| hypothetical protein WP12_05650 [Sphingomonas sp. SRS2])

HSP 1 Score: 83.9593 bits (206), Expect = 1.168e-14
Identity = 67/223 (30.04%), Postives = 105/223 (47.09%), Query Frame = 0
Query:  109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLL---DDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDAR 328
            ++ +LQTSD      YS+ML A   T + YA + GF Y  + G+ +G +  HA +NRI LL  +       W L++D DA V D   ++   L    DR AV+    G+   + W IN GV  FNL H    SL+ EW      +A  +L          ++       +DQ + +  L+  P+ +  V      EDA LFN++D +++     + + + D R
Sbjct:    2 DLTILQTSDA---FKYSRMLRATSRTAIEYARRHGFVYESFTGIKRGFRGAHAAFNRIMLLDEMIARGNRGWALYMDADAYVYDLDFDLHTYLADKQDRSAVMATIPGE--MVPWHINSGVLLFNLGHPAGRSLIGEWKRRFMAIAEDSLR---------SLETVWDDENDQILLYKALNEDPVLRDAVL----FEDAKLFNHHDARFIRQFLNSLDGNIDTR 206          
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|826042493|ref|WP_047166569.1| (hypothetical protein [Sphingomonas sp. Y57])

HSP 1 Score: 83.1889 bits (204), Expect = 2.112e-14
Identity = 70/247 (28.34%), Postives = 110/247 (44.53%), Query Frame = 0
Query:  109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLL---DDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRLLVLKAAFFKSMGEMAEEDIQ 352
             + +LQTSD      YS+ML A   T + Y  + GF Y  + G+ +G     A +NRIFLL  L E     W L++D DA V D   +++  L    DR A++    G+   + W IN GV FFNL H +  +L++EW      V    L          T+       +DQ M +  L +    +A         D +LFN++ G ++  L  + + D ++R  ++    A  F+         I+
Sbjct:    2 ELTILQTSDA---FKYSRMLRATSRTAIEYCRRHGFAYESFVGIKRGFHGAQAAFNRIFLLDELIERGYRGWALYMDADAYVFDLDFDLKAYLADKQDRSAIMTTIPGE--AVAWHINSGVLFFNLGHPQGVALVREWKRRFMAVPDERLR---------TLTSVWDHDNDQTMLYQALDQDCALRASALFV----DPMLFNHHQGLFIRQLLNSLDGDIESRTNKIEAAVAEIFQKAAATGTTSIE 230          
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|500996761|ref|WP_012050197.1| (hypothetical protein [Sphingomonas wittichii] >gi|148502104|gb|ABQ70358.1| hypothetical protein Swit_4013 [Sphingomonas wittichii RW1])

HSP 1 Score: 83.1889 bits (204), Expect = 2.610e-14
Identity = 61/223 (27.35%), Postives = 102/223 (45.74%), Query Frame = 0
Query:  109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRY---AVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDAR 328
             + +LQTSD      YS+ML A   T + Y  + GF Y  + G+ +G    HAT+NR+F+L  L E     W L++D DA + D   ++   L D+    A++    G+   + W IN GV FFNL H     L+ EW      +    L          T+       +DQ M +  L ++      ++     ED ++FN+++ +++     + + D + R
Sbjct:    2 ELTILQTSDAFK---YSRMLRATSRTAIEYCRRHGFAYESFVGIKRGFHGAHATFNRMFMLTELIERGYRGWALYMDADAYIYDLAFDLRAYLADKQRHSAIMTTIPGE--TVPWHINAGVLFFNLAHPSSADLIAEWKRRFMAIPEERLR---------TLTSVWDYDNDQTMLYQSLDQN----VALRDSVLFEDPMIFNHHEARFIRQFLHSLDTDIERR 206          
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|515118170|ref|WP_016747175.1| (hypothetical protein [Sphingomonas wittichii])

HSP 1 Score: 82.8037 bits (203), Expect = 2.738e-14
Identity = 62/223 (27.80%), Postives = 101/223 (45.29%), Query Frame = 0
Query:  109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRY---AVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDAR 328
             + +LQTSD      YS+ML A   T + Y  + GF Y  + G+ +G    HAT+NR+F+L  L E     W L++D DA + D   ++   L D+    A++    G+   + W IN GV FFNL H     L+ EW      +    L        Y          +DQ M +  L ++   +  V      ED ++FN+++ +++     + + D + R
Sbjct:    2 ELTILQTSDAFK---YSRMLRATSRTAIEYCRRHGFAYESFVGIKRGFHGAHATFNRMFMLTELIERGYRGWTLYMDADAYIYDLAFDLRAYLADKQRHSAIMTTIPGE--TVPWHINAGVLFFNLAHPSSADLIAEWKRRFMAIPEERLRTLTSVWDY---------DNDQTMLYQSLDQNVALRDPVL----FEDPMIFNHHEARFIRQFLHSLDTDIERR 206          
The following BLAST results are available for this feature:
BLAST of EWM30543.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113207|gb|EWM30543.1|0.000e+0100.00hypothetical protein Naga_100013g40 [Nannochlorops... [more]
gi|516083727|ref|WP_017514310.1|2.539e-3036.28MULTISPECIES: hypothetical protein [Cupriavidus] >... [more]
gi|519049214|ref|WP_020205089.1|6.522e-2735.19hypothetical protein [Cupriavidus sp. WS][more]
gi|981090778|ref|WP_059413228.1|7.043e-2637.17hypothetical protein [Cupriavidus basilensis][more]
gi|947703185|ref|WP_056365600.1|2.117e-1528.57MULTISPECIES: hypothetical protein [Sphingomonas] ... [more]
gi|947702267|ref|WP_056364682.1|4.034e-1528.05MULTISPECIES: hypothetical protein [Sphingomonas] ... [more]
gi|806906023|ref|WP_046192789.1|1.168e-1430.04hypothetical protein [Sphingomonas sp. SRS2] >gi|8... [more]
gi|826042493|ref|WP_047166569.1|2.112e-1428.34hypothetical protein [Sphingomonas sp. Y57][more]
gi|500996761|ref|WP_012050197.1|2.610e-1427.35hypothetical protein [Sphingomonas wittichii] >gi|... [more]
gi|515118170|ref|WP_016747175.1|2.738e-1427.80hypothetical protein [Sphingomonas wittichii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna178rna178Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications