EWM30543.1, cds178 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|585113207|gb|EWM30543.1| (hypothetical protein Naga_100013g40 [Nannochloropsis gaditana]) HSP 1 Score: 780.4 bits (2014), Expect = 0.000e+0 Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query: 1 MDSNRPTKRLIHHYIKQHRGWHNVCSLTAVRKAHMRVIVSGIAVLVTCLLVTNLILERRNGRGGNFLHLLRLGGINAGAPARLRQDLPLLGKARSYVSYDCGGGCAKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRLLVLKAAFFKSMGEMAEEDIQGGRRVVEARQREGVEKVKAPGHEGTH 378
MDSNRPTKRLIHHYIKQHRGWHNVCSLTAVRKAHMRVIVSGIAVLVTCLLVTNLILERRNGRGGNFLHLLRLGGINAGAPARLRQDLPLLGKARSYVSYDCGGGCAKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRLLVLKAAFFKSMGEMAEEDIQGGRRVVEARQREGVEKVKAPGHEGTH
Sbjct: 1 MDSNRPTKRLIHHYIKQHRGWHNVCSLTAVRKAHMRVIVSGIAVLVTCLLVTNLILERRNGRGGNFLHLLRLGGINAGAPARLRQDLPLLGKARSYVSYDCGGGCAKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRLLVLKAAFFKSMGEMAEEDIQGGRRVVEARQREGVEKVKAPGHEGTH 378
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|516083727|ref|WP_017514310.1| (MULTISPECIES: hypothetical protein [Cupriavidus] >gi|982560046|gb|KWR84253.1| hypothetical protein RN01_07030 [Cupriavidus sp. SHE]) HSP 1 Score: 125.561 bits (314), Expect = 2.539e-30 Identity = 82/226 (36.28%), Postives = 116/226 (51.33%), Query Frame = 0
Query: 106 AKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDR--YAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARL 329
++ ++L+QTSD STS Y ML T Y + G Y + GL +G + WHATYNRI LL L + WVLF+D DA + D ++ L D+ YA++ G D FW++NIGV FNL H +++++W + + + + LER A GQ P DDQ MFH +L +HP LV E+ FN +V RA+N D + RL
Sbjct: 9 SEPEVILMQTSD--STSRYFDMLMVTAQTARRYCQRHGLRYQAFVGLKRGNRPWHATYNRIDLLQELVQRDFRGWVLFVDADAWIADMEFDLPAYLRDKSQYAMIAAPAGHSTDFFWNVNIGVMLFNLAHPFMRAIIRDWESFLSR---YQLERD----AIDWNGQIP---DDQGMFHQILDKHPESADLVLH----EEKSFFNSPWASFVRQAIRAENADIEQRL 218
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|519049214|ref|WP_020205089.1| (hypothetical protein [Cupriavidus sp. WS]) HSP 1 Score: 116.701 bits (291), Expect = 6.522e-27 Identity = 82/233 (35.19%), Postives = 116/233 (49.79%), Query Frame = 0
Query: 102 GGGCAKSNILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDR--YAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRL 332
+ +I+++QTSD ++S Y M+ T Y G Y + GL +G +AWHATYNRI LL L + WVL++D DA + D ++ L D+ YA++ G D FW++NIGV FNL H L+++W A + + + LER A GQ P DDQ MFH +L +H + LV D L N +V RA+N D D RL R+
Sbjct: 16 ANASGEDDIIVMQTSD--ASSRYFDMMMLTARTARRYCEHHGLRYQGFIGLKRGNRAWHATYNRIDLLQELIQRDHRGWVLYVDADAWIVDMTFDLRGYLRDKQGYAMIAAPAGHVRDFFWNVNIGVMLFNLGHPFTRRLVRDWEAFLSR---YRLERD----AIDWNGQVP---DDQGMFHQLLDKHADAEPLVLH----ADKSLLNSPWASFVRQAIRAENTDIDERLRRI 232
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|981090778|ref|WP_059413228.1| (hypothetical protein [Cupriavidus basilensis]) HSP 1 Score: 113.62 bits (283), Expect = 7.043e-26 Identity = 84/226 (37.17%), Postives = 114/226 (50.44%), Query Frame = 0
Query: 109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDD--RYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRL 332
I+L+QTSD ++S Y M+ T Y + Y + GL +G + WHATYNRI LL L + WVL++D DA V D ++ L D RYA++ D FW++NIGV FNL H L++EW A + + ++LER A GQ P DDQ MFH +L +H K+LV D L N +V RA+N D D RL R+
Sbjct: 12 EIILMQTSD--ASSRYFDMMMLTGQTARGYCDRHQLRYQGFIGLKRGNRPWHATYNRIDLLCELIDRGFGGWVLYIDADAWVVDLDFDLRGWLRDKQRYAMIAAPAAHTSDYFWNVNIGVMLFNLGHPFTRRLVREWEAFLSR---YSLERD----AIDWNGQVP---DDQGMFHQLLDKHEDAKSLVLH----ADKSLLNSPWASFVRQAIRAENADIDERLRRI 221
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|947703185|ref|WP_056365600.1| (MULTISPECIES: hypothetical protein [Sphingomonas] >gi|945667106|gb|KQX21675.1| hypothetical protein ASD17_06940 [Sphingomonas sp. Root1294] >gi|945819159|gb|KQY72990.1| hypothetical protein ASD39_00925 [Sphingomonas sp. Root50] >gi|946136124|gb|KRB88212.1| hypothetical protein ASE22_22510 [Sphingomonas sp. Root720]) HSP 1 Score: 85.1149 bits (209), Expect = 2.117e-15 Identity = 66/231 (28.57%), Postives = 108/231 (46.75%), Query Frame = 0
Query: 110 ILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDR--YAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAV-QKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKA--LVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQD--ARLLRLL 333
+L +QT+ G Y ML A + H AY A G + G+ +G W AT+NR+ +L W L++D DA++R ++ L R +A++ GG+ W+IN GV F NL + ++ + W+ AV Q V+ LE + + G DDQ + VL KA L++R +FNY G++++ RA +D ++LR++
Sbjct: 21 MLFVQTASG---PLYETMLAATDARHRAYCAANGIDFWSHVGIRRGFHPWQATFNRVHMLADRLAEGWEGWFLYVDADAVIRQTMFDIRRYLGKRAQHALIAAPGGEQD---WNINAGVLFLNLGDERGRTIAQRWITAVGQAVSDEMLE--AMVEPWGRLPDGRDFPDDQHLLQMVLRDDEALKAGLLIER------DPIFNYRSGRFISQFIRATGAPEDRLEQMLRIM 237
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|947702267|ref|WP_056364682.1| (MULTISPECIES: hypothetical protein [Sphingomonas] >gi|945668172|gb|KQX22738.1| hypothetical protein ASD17_05515 [Sphingomonas sp. Root1294] >gi|945814078|gb|KQY67948.1| hypothetical protein ASD39_07610 [Sphingomonas sp. Root50] >gi|946136783|gb|KRB88868.1| hypothetical protein ASE22_19960 [Sphingomonas sp. Root720]) HSP 1 Score: 85.5001 bits (210), Expect = 4.034e-15 Identity = 62/221 (28.05%), Postives = 104/221 (47.06%), Query Frame = 0
Query: 109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRY---AVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQD 326
+ +LQTSD YS+ML A T + Y + GF Y + G+ +G HAT+NR+F+L L + WVL++D DA + D ++ L D+ A++ G+ + W IN GV FFNL H +L++EW + L T+ +DQ M + L ++ ++ ED ++FN+++ +++ +LD D
Sbjct: 2 ELTILQTSDAFK---YSRMLRATSRTAIEYCRRHGFAYESFVGIKRGFHGAHATFNRMFMLTELIDRGYRGWVLYMDADAYIYDLDFDLRAYLADKQGHSAIMTTIPGE--TVAWHINAGVLFFNLAHSSTAALIREWKRRFMAIPEERLR---------TLTSVWDYDNDQTMLYQSLDQN----VALREPVLFEDPMIFNHHEARFIRQFLH--SLDND 202
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|806906023|ref|WP_046192789.1| (hypothetical protein [Sphingomonas sp. SRS2] >gi|806530770|gb|KKC26957.1| hypothetical protein WP12_05650 [Sphingomonas sp. SRS2]) HSP 1 Score: 83.9593 bits (206), Expect = 1.168e-14 Identity = 67/223 (30.04%), Postives = 105/223 (47.09%), Query Frame = 0
Query: 109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLL---DDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDAR 328
++ +LQTSD YS+ML A T + YA + GF Y + G+ +G + HA +NRI LL + W L++D DA V D ++ L DR AV+ G+ + W IN GV FNL H SL+ EW +A +L ++ +DQ + + L+ P+ + V EDA LFN++D +++ + + + D R
Sbjct: 2 DLTILQTSDA---FKYSRMLRATSRTAIEYARRHGFVYESFTGIKRGFRGAHAAFNRIMLLDEMIARGNRGWALYMDADAYVYDLDFDLHTYLADKQDRSAVMATIPGE--MVPWHINSGVLLFNLGHPAGRSLIGEWKRRFMAIAEDSLR---------SLETVWDDENDQILLYKALNEDPVLRDAVL----FEDAKLFNHHDARFIRQFLNSLDGNIDTR 206
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|826042493|ref|WP_047166569.1| (hypothetical protein [Sphingomonas sp. Y57]) HSP 1 Score: 83.1889 bits (204), Expect = 2.112e-14 Identity = 70/247 (28.34%), Postives = 110/247 (44.53%), Query Frame = 0
Query: 109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLL---DDRYAVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDARLLRLLVLKAAFFKSMGEMAEEDIQ 352
+ +LQTSD YS+ML A T + Y + GF Y + G+ +G A +NRIFLL L E W L++D DA V D +++ L DR A++ G+ + W IN GV FFNL H + +L++EW V L T+ +DQ M + L + +A D +LFN++ G ++ L + + D ++R ++ A F+ I+
Sbjct: 2 ELTILQTSDA---FKYSRMLRATSRTAIEYCRRHGFAYESFVGIKRGFHGAQAAFNRIFLLDELIERGYRGWALYMDADAYVFDLDFDLKAYLADKQDRSAIMTTIPGE--AVAWHINSGVLFFNLGHPQGVALVREWKRRFMAVPDERLR---------TLTSVWDHDNDQTMLYQALDQDCALRASALFV----DPMLFNHHQGLFIRQLLNSLDGDIESRTNKIEAAVAEIFQKAAATGTTSIE 230
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|500996761|ref|WP_012050197.1| (hypothetical protein [Sphingomonas wittichii] >gi|148502104|gb|ABQ70358.1| hypothetical protein Swit_4013 [Sphingomonas wittichii RW1]) HSP 1 Score: 83.1889 bits (204), Expect = 2.610e-14 Identity = 61/223 (27.35%), Postives = 102/223 (45.74%), Query Frame = 0
Query: 109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRY---AVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDAR 328
+ +LQTSD YS+ML A T + Y + GF Y + G+ +G HAT+NR+F+L L E W L++D DA + D ++ L D+ A++ G+ + W IN GV FFNL H L+ EW + L T+ +DQ M + L ++ ++ ED ++FN+++ +++ + + D + R
Sbjct: 2 ELTILQTSDAFK---YSRMLRATSRTAIEYCRRHGFAYESFVGIKRGFHGAHATFNRMFMLTELIERGYRGWALYMDADAYIYDLAFDLRAYLADKQRHSAIMTTIPGE--TVPWHINAGVLFFNLAHPSSADLIAEWKRRFMAIPEERLR---------TLTSVWDYDNDQTMLYQSLDQN----VALRDSVLFEDPMIFNHHEARFIRQFLHSLDTDIERR 206
BLAST of EWM30543.1 vs. NCBI_GenBank
Match: gi|515118170|ref|WP_016747175.1| (hypothetical protein [Sphingomonas wittichii]) HSP 1 Score: 82.8037 bits (203), Expect = 2.738e-14 Identity = 62/223 (27.80%), Postives = 101/223 (45.29%), Query Frame = 0
Query: 109 NILLLQTSDGGSTSTYSKMLDALQSTHLAYAAQRGFHYLRWDGLMKGRQAWHATYNRIFLLHALHESRRYEWVLFLDPDAIVRDPRLNVEDLLDDRY---AVLGCRGGDDPDLFWDINIGVAFFNLRHKEFGSLMKEWMAAVQKVAPWTLERGGGTAAYITMGQGPRVRDDQQMFHDVLSRHPMGKALVKRYYSGEDAVLFNYNDGKYVAHLTRADNLDQDAR 328
+ +LQTSD YS+ML A T + Y + GF Y + G+ +G HAT+NR+F+L L E W L++D DA + D ++ L D+ A++ G+ + W IN GV FFNL H L+ EW + L Y +DQ M + L ++ + V ED ++FN+++ +++ + + D + R
Sbjct: 2 ELTILQTSDAFK---YSRMLRATSRTAIEYCRRHGFAYESFVGIKRGFHGAHATFNRMFMLTELIERGYRGWTLYMDADAYIYDLAFDLRAYLADKQRHSAIMTTIPGE--TVPWHINAGVLFFNLAHPSSADLIAEWKRRFMAIPEERLRTLTSVWDY---------DNDQTMLYQSLDQNVALRDPVL----FEDPMIFNHHEARFIRQFLHSLDTDIERR 206 The following BLAST results are available for this feature:
BLAST of EWM30543.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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