rna1771, rna1771 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1771
Unique Name	rna1771
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	975
Alignment location	CM002458.1:81340..83426 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101190g1.5761.mrna
Orig protein id	gnl\|cribi\|Naga_101190g1.5761
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002458.1	supercontig	CM002458.1:81340..83426 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101190g1	gene1704	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1771	rna1771-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28905.1	cds1767	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002458.1:81340..83426-
coding sequence from alignment at CM002458.1:81340..83426-

mRNA sequence

>rna1771 ID=rna1771|Name=rna1771|organism=Nannochloropsis gaditana|type=mRNA|length=975bp
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTTCCTCTT
TACCCCTCCTTCCTCTCTCTCTGAATCGTGTCGGTCTGGATCCCAGCACA
GGTCTTCCTCTTCACCTCTGACCTCCCTTCCTCCCTCCCTCCCTCCCTCC
CTCCCAGCGCGTGGTCATCATCGTCGCCTCCTGCATCGTCTTCCGCACTC
CCACCACCTTCTTGGGGAACGTGGGGAGTGCCATCGCCGTGCTGGGTACC
CTCCTCTACTCTCTCGCCAAGAAGAAGTACTCGGCCTCGGCGCACTGAGC
CGCCCGCCCGCCCTCCCTCCCGCCCTCCTTCCCGCCCTCTCCCGCCTGCA
GACTAAGGTCGCCAGGGGCGTGGCGGGGGGGAGGAGAGGGAGGGAGGGAG
GAAGACGGGACTGGTGGATGGGATGGGCGATGGAGGATATCGTCGGTATT
ACAAAAAAGCGTATTAATGAGGGAAATGGAAGGGGTGAGAATGGACGAAG
AGGGGGGAGGACATCGACGATGCGATCCTCGGCTGCCCCCCCCGTTGAAC
TGGCAACGTGGCAGGGTGGAGGAAGCCCAAGGGGTACGGGAAGGCAAAGA
AGAAGGTGGGAAGCGGTCGGAATACTATATCTCGGACCGCCCAGGCGGAC
TATTCACGTGGATGGGGGTGTGAGAGGTGACCAGGGGGGGCATAGGGGAG
ACTGGATGTGAATGGAAAGCAAAGAGATGCGCATGGGGGCACAAGATTGA
CCAAGCCTGCTCAATGGGGCGCAGAGGGACAAGCATGGCAAGGAAGAGAA
GAAAGAAAGAATTGGAAGAGGAGGGCGGCGAAGGGGGAAGAAAAAGAGAG
GGAGCTTGGGGGGGTACAGTCACCGCGGCTGCACAGACGAGAGAGGCGGG
ATGGAGTGCGTGAACGGCTGGGATAAAAAAATGGAAAGCAAAGCAACGGA
GACATCCTACAGGGCCCAGAAAGCC

protein sequence of rna1771

>rna1771-protein ID=rna1771-protein|Name=rna1771|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MERGNRHPDRKSTPTMRAASASDSNVKPILPMARFSAPFCLRVFGAGVVL
ATAFSLQAPLSSRSTVAPAGKALAFAPPKGTGVPAPAGLVKKENDFSFRL
QSVAGGAAAPAPKKNALLEKVWNENTKLVTYITVWYLGNIWYNIYNKKAL
NLLGKNGGGALGPGGGAALGRGSLCDSPVGPRRA

mRNA from alignment at CM002458.1:81340..83426-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1771 ID=rna1771|Name=rna1771|organism=Nannochloropsis gaditana|type=mRNA|length=2087bp|location=Sequence derived from alignment at CM002458.1:81340..83426- (Nannochloropsis gaditana)
TGCACTTGCATACTCTCATGCATGCTGTACCTAGTGATGACGATGCCTAG
ACGCCAACGTCTCCATCAGAAGAGAATTCGACGAGAGGGGTTGCTTCGCC
GCCGGGGCGAGACAGACTTCTGAACACAGGGTGTGACGTGTCACGAATAT
ATACAAAGCCGCACAGGCCGGACAAGCCGCGTGACTTGATCAACATATGG
TCATTCCGCGAAATCCCAGCGTAGTGACCACACGCCCACGGGGCGGTGGT
TTTGAAAAACGAAGAGAGAGAGAGATGGAGACTGGAAATTGAAGACTTGA
GGCGCAAGCCTGGAGATTCTTCCTTCTTCAACAAGCGGGAAAAGAGTGAA
GTAGACCGAAGAAAGCGGGCGCGTGCACGCCGCGTAAGGGTGCCTTCTTA
CGCCTTGACGTGGGTGCTTGGACGCGGAGGGAGTGGCATGTGGCCTGCGT
GGTGTTTAGGGCCGAGTGTTGCGGAGTTAGGGAAACTGATTCAGTGAACG
TATATCTTCGCATTCAGTTTCCCCTCCCGGTTGCAGTACAACCAGGACCA
ATGCAAGTGCCACCGACGGTCTTCTGGAAGCGGTTGCTCCTCTCTCTGTG
TTTAGGGATGCCTGTCACTGGCTTTGAAGCGTGGATGGCAATGTTGTGCA
TGCTTTTGGGCGCCTTTGTCACGGGGTCGGAGGGAAATTCGGTGGAGAGA
GACCAGCTAAGCCAGCACCCTCATGAAGCAACACGATGGAGCGAGGAAAC
CGGCACCCCGATAGAAAATCTACCCCTACAATGCGTGCCGCATCAGCATC
GGACTCAAATGTGGTATTCACTCACATTCACTCACATATCTAGGCTAATG
TGATCATTAGGTGCTTTATGCTGACAAACTCTCCATATTTTTCCTTCTCT
TCCACCCGAAAATGTTAGAAGCCTATACTACCCATGGCACGTTTCTCCGC
CCCCTTTTGCCTCCGTGTGTTTGGCGCAGGCGTTGTGCTTGCCACGGCTT
TTTCGCTCCAAGCGCCCTTATCCAGCCGCAGCACTGTGTAAGTGGACATT
GGGAAGCTGAGAAATGGGCTGGGAGAAAGGGGGTCGGGCAACGGAAGCGA
GCAGGCGATTTTTGGGAACATGCACGATTAAGAAGCCCCGAAAAGAGCTT
CGAAGCTAACCGTTCCTGTCTTCTTTGTGACACTTCCACCTGTATTGGTG
GTTACTCCACGCCGGAGGTGATTCACGGAGTCTATGTCTACCTCCTCCTC
TCACATCCCTCCTCCTTCCCTCACGTCCTTCTTTCAGAGCCCCGGCAGGG
AAGGCATTGGCCTTTGCTCCTCCCAAGGGCACGGGGGTACCTGCGCCGGC
GGGTCTTGTGAAGAAAGAGAATGACTTCTCCTTCCGCCTCCAATCTGTGG
CCGGGGGGGCGGCGGCCCCCGCGCCGAAGAAGAACGCCTTGCTGGAGAAG
GTGATGAGTTGGGAGTGACAAGGGAAGGTTGGGACGTGATGAGTGGCGTG
ATTAAAGGGGAGGGGATCATGTCGTGATAAGGAGGAAGGGGTGGACGGCA
GGAGGGGCAGGCGAGGGAGGGAAGGTCGGAACAGCAGGCTCTCTTAGGGA
GGAACGACGGGGGAAAGGGAGGAAGCGGGCGGCAGACAGACGGGCCGAAG
GGGAAAAGGCGGAGGGTGGAAAGGACTCGAGAGAAGTCTAGGCACGTGCT
CATTCTGTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTTCCTCCCTCC
CTCCCTCCCTCGTATTAGGTCTGGAACGAAAACACCAAGTTGGTGACCTA
CATTACCGTCTGGTACCTGGGCAACATCTGGTACAACATCTACAACAAGA
AGGTACCCCCCCCTCCCTCCCTCCCTCCCCCTTCCCTCCCCCCCTTCCCT
CCCCTCCTCCCCTCCCCTCCCTTCCTTGCCGGCACCCACTCGTCCCCCTT
CCTTCCTCCCTCCCTCCCTCCCTCCCTCAGGCCCTGAACCTGCTGGGCAA
GAATGGGGGAGGGGCATTGGGCCCTGGCGGCGGGGCAGCTCTTGGTAGGG
GCTCTCTTTGTGATTCCCCAGTGGGTCCTAGGCGTGC

Coding sequence (CDS) from alignment at CM002458.1:81340..83426-

>rna1771 ID=rna1771|Name=rna1771|organism=Nannochloropsis gaditana|type=CDS|length=2755bp|location=Sequence derived from alignment at CM002458.1:81340..83426- (Nannochloropsis gaditana)
GCCCTGAACCTGCTGGGCAAGAATGGGGGAGGGGCATTGGGCCCTGGCGG
CGGGGCAGCTCTTGGTAGGGGCTCTCTTTGTGATTCCCCAGTGGGTCCTA
GGCGTGCGTCTGGAACGAAAACACCAAGTTGGTGACCTACATTACCGTCT
GGTACCTGGGCAACATCTGGTACAACATCTACAACAAGAAGAGCCCCGGC
AGGGAAGGCATTGGCCTTTGCTCCTCCCAAGGGCACGGGGGTACCTGCGC
CGGCGGGTCTTGTGAAGAAAGAGAATGACTTCTCCTTCCGCCTCCAATCT
GTGGCCGGGGGGGCGGCGGCCCCCGCGCCGAAGAAGAACGCCTTGCTGGA
GAAGAAGCCTATACTACCCATGGCACGTTTCTCCGCCCCCTTTTGCCTCC
GTGTGTTTGGCGCAGGCGTTGTGCTTGCCACGGCTTTTTCGCTCCAAGCG
CCCTTATCCAGCCGCAGCACTGTATGGAGCGAGGAAACCGGCACCCCGAT
AGAAAATCTACCCCTACAATGCGTGCCGCATCAGCATCGGACTCAAATGT
GGCCCTGAACCTGCTGGGCAAGAATGGGGGAGGGGCATTGGGCCCTGGCG
GCGGGGCAGCTCTTGGTAGGGGCTCTCTTTGTGATTCCCCAGTGGGTCCT
AGGCGTGCGTCTGGAACGAAAACACCAAGTTGGTGACCTACATTACCGTC
TGGTACCTGGGCAACATCTGGTACAACATCTACAACAAGAAGAGCCCCGG
CAGGGAAGGCATTGGCCTTTGCTCCTCCCAAGGGCACGGGGGTACCTGCG
CCGGCGGGTCTTGTGAAGAAAGAGAATGACTTCTCCTTCCGCCTCCAATC
TGTGGCCGGGGGGGCGGCGGCCCCCGCGCCGAAGAAGAACGCCTTGCTGG
AGAAGAAGCCTATACTACCCATGGCACGTTTCTCCGCCCCCTTTTGCCTC
CGTGTGTTTGGCGCAGGCGTTGTGCTTGCCACGGCTTTTTCGCTCCAAGC
GCCCTTATCCAGCCGCAGCACTGTATGGAGCGAGGAAACCGGCACCCCGA
TAGAAAATCTACCCCTACAATGCGTGCCGCATCAGCATCGGACTCAAATG
TGGCCCTGAACCTGCTGGGCAAGAATGGGGGAGGGGCATTGGGCCCTGGC
GGCGGGGCAGCTCTTGGTAGGGGCTCTCTTTGTGATTCCCCAGTGGGTCC
TAGGCGTGCGTCTGGAACGAAAACACCAAGTTGGTGACCTACATTACCGT
CTGGTACCTGGGCAACATCTGGTACAACATCTACAACAAGAAGAGCCCCG
GCAGGGAAGGCATTGGCCTTTGCTCCTCCCAAGGGCACGGGGGTACCTGC
GCCGGCGGGTCTTGTGAAGAAAGAGAATGACTTCTCCTTCCGCCTCCAAT
CTGTGGCCGGGGGGGCGGCGGCCCCCGCGCCGAAGAAGAACGCCTTGCTG
GAGAAGAAGCCTATACTACCCATGGCACGTTTCTCCGCCCCCTTTTGCCT
CCGTGTGTTTGGCGCAGGCGTTGTGCTTGCCACGGCTTTTTCGCTCCAAG
CGCCCTTATCCAGCCGCAGCACTGTATGGAGCGAGGAAACCGGCACCCCG
ATAGAAAATCTACCCCTACAATGCGTGCCGCATCAGCATCGGACTCAAAT
GTGGCCCTGAACCTGCTGGGCAAGAATGGGGGAGGGGCATTGGGCCCTGG
CGGCGGGGCAGCTCTTGGTAGGGGCTCTCTTTGTGATTCCCCAGTGGGTC
CTAGGCGTGCGTCTGGAACGAAAACACCAAGTTGGTGACCTACATTACCG
TCTGGTACCTGGGCAACATCTGGTACAACATCTACAACAAGAAGAGCCCC
GGCAGGGAAGGCATTGGCCTTTGCTCCTCCCAAGGGCACGGGGGTACCTG
CGCCGGCGGGTCTTGTGAAGAAAGAGAATGACTTCTCCTTCCGCCTCCAA
TCTGTGGCCGGGGGGGCGGCGGCCCCCGCGCCGAAGAAGAACGCCTTGCT
GGAGAAGAAGCCTATACTACCCATGGCACGTTTCTCCGCCCCCTTTTGCC
TCCGTGTGTTTGGCGCAGGCGTTGTGCTTGCCACGGCTTTTTCGCTCCAA
GCGCCCTTATCCAGCCGCAGCACTGTATGGAGCGAGGAAACCGGCACCCC
GATAGAAAATCTACCCCTACAATGCGTGCCGCATCAGCATCGGACTCAAA
TGTGGCCCTGAACCTGCTGGGCAAGAATGGGGGAGGGGCATTGGGCCCTG
GCGGCGGGGCAGCTCTTGGTAGGGGCTCTCTTTGTGATTCCCCAGTGGGT
CCTAGGCGTGCGTCTGGAACGAAAACACCAAGTTGGTGACCTACATTACC
GTCTGGTACCTGGGCAACATCTGGTACAACATCTACAACAAGAAGAGCCC
CGGCAGGGAAGGCATTGGCCTTTGCTCCTCCCAAGGGCACGGGGGTACCT
GCGCCGGCGGGTCTTGTGAAGAAAGAGAATGACTTCTCCTTCCGCCTCCA
ATCTGTGGCCGGGGGGGCGGCGGCCCCCGCGCCGAAGAAGAACGCCTTGC
TGGAGAAGAAGCCTATACTACCCATGGCACGTTTCTCCGCCCCCTTTTGC
CTCCGTGTGTTTGGCGCAGGCGTTGTGCTTGCCACGGCTTTTTCGCTCCA
AGCGCCCTTATCCAGCCGCAGCACTGTATGGAGCGAGGAAACCGGCACCC
CGATAGAAAATCTACCCCTACAATGCGTGCCGCATCAGCATCGGACTCAA
ATGTG

Synonyms

Publications