EWM28905.1, cds1767 (CDS) Nannochloropsis gaditana

Overview
NameEWM28905.1
Unique Namecds1767
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:82614..82691 -
Alignment locationCM002458.1:82390..82508 -
Alignment locationCM002458.1:81977..82139 -
Alignment locationCM002458.1:81575..81658 -
Alignment locationCM002458.1:81340..81446 -

Link to JBrowse

Properties
Property NameValue
Start range81340
Start range.
Protein idEWM28905.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101190g1.5761.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:82614..82691 -
CM002458.1supercontigCM002458.1:82390..82508 -
CM002458.1supercontigCM002458.1:81977..82139 -
CM002458.1supercontigCM002458.1:81575..81658 -
CM002458.1supercontigCM002458.1:81340..81446 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM28905.1 vs. NCBI_GenBank
Match: gi|585111355|gb|EWM28905.1| (hypothetical protein Naga_101190g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 367.851 bits (943), Expect = 9.513e-129
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 
Query:    1 MERGNRHPDRKSTPTMRAASASDSNVKPILPMARFSAPFCLRVFGAGVVLATAFSLQAPLSSRSTVAPAGKALAFAPPKGTGVPAPAGLVKKENDFSFRLQSVAGGAAAPAPKKNALLEKVWNENTKLVTYITVWYLGNIWYNIYNKKALNLLGKNGGGALGPGGGAALGRGSLCDSPVGPRRA 184
            MERGNRHPDRKSTPTMRAASASDSNVKPILPMARFSAPFCLRVFGAGVVLATAFSLQAPLSSRSTVAPAGKALAFAPPKGTGVPAPAGLVKKENDFSFRLQSVAGGAAAPAPKKNALLEKVWNENTKLVTYITVWYLGNIWYNIYNKKALNLLGKNGGGALGPGGGAALGRGSLCDSPVGPRRA
Sbjct:    1 MERGNRHPDRKSTPTMRAASASDSNVKPILPMARFSAPFCLRVFGAGVVLATAFSLQAPLSSRSTVAPAGKALAFAPPKGTGVPAPAGLVKKENDFSFRLQSVAGGAAAPAPKKNALLEKVWNENTKLVTYITVWYLGNIWYNIYNKKALNLLGKNGGGALGPGGGAALGRGSLCDSPVGPRRA 184
[Close]
BLAST of EWM28905.1 vs. NCBI_GenBank
Match: gi|551649852|ref|XP_005827710.1| (hypothetical protein GUITHDRAFT_158290 [Guillardia theta CCMP2712] >gi|428171816|gb|EKX40730.1| hypothetical protein GUITHDRAFT_158290 [Guillardia theta CCMP2712])

HSP 1 Score: 59.3066 bits (142), Expect = 3.439e-7
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0 
Query:  121 VWNENTKLVTYITVWYLGNIWYNIYNKKALNLLGKNGGGALGPGGGAALGRGSLCDSPV 179
            +WNE  +L  Y  +WY GN +YNIYNKKA+NLLG + GG +     A L  G L   P+
Sbjct:    1 MWNETVELAIYFALWYWGNTYYNIYNKKAMNLLGGSKGGLVWTVSSAQLFVGILWVIPL 59
The following BLAST results are available for this feature:
BLAST of EWM28905.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111355|gb|EWM28905.1|9.513e-129100.00hypothetical protein Naga_101190g1, partial [Nanno... [more]
gi|551649852|ref|XP_005827710.1|3.439e-747.46hypothetical protein GUITHDRAFT_158290 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1771rna1771Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications